{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,3]],"date-time":"2024-06-03T04:40:44Z","timestamp":1717389644592},"reference-count":41,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2014,4,10]],"date-time":"2014-04-10T00:00:00Z","timestamp":1397088000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1003546","type":"journal-article","created":{"date-parts":[[2014,4,10]],"date-time":"2014-04-10T16:51:18Z","timestamp":1397148678000},"page":"e1003546","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":6,"title":["Multiple Model-Informed Open-Loop Control of Uncertain Intracellular Signaling Dynamics"],"prefix":"10.1371","volume":"10","author":[{"given":"Jeffrey P.","family":"Perley","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Judith","family":"Mikolajczak","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marietta L.","family":"Harrison","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gregery T.","family":"Buzzard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ann E.","family":"Rundell","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2014,4,10]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"4966","DOI":"10.4049\/jimmunol.167.9.4966","article-title":"Duration and strength of extracellular signal-regulated kinase signals are altered during positive versus negative thymocyte selection","volume":"167","author":"S Mariathasan","year":"2001","journal-title":"Journal of Immunology"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"7299","DOI":"10.4049\/jimmunol.173.12.7299","article-title":"Differential activation of ERK, p38, and JNK required for Th1 and Th2 deviation in myelin-reactive T cells induced by altered peptide ligand","volume":"173","author":"RAK Singh","year":"2004","journal-title":"Journal of Immunology"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"2358","DOI":"10.1182\/blood-2006-02-003475","article-title":"Simultaneous activation of multiple signal transduction pathways confers poor prognosis in acute myelogenous leukemia","volume":"108","author":"SM Kornblau","year":"2006","journal-title":"Blood"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"1543","DOI":"10.1038\/sj.leu.2403859","article-title":"Quantitative single cell determination of ERK phosphorylation and regulation in relapsed and refractory primary acute myeloid leukemia","volume":"19","author":"MR Ricciardi","year":"2005","journal-title":"Leukemia"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1049\/ip-syb:20050088","article-title":"Comparative study of parameter sensitivity analyses of the TCR-activated Erk-MAPK signalling pathway","volume":"153","author":"Y Zheng","year":"2006","journal-title":"IEEE Proceedings Systems Biology"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1016\/j.jtbi.2008.05.001","article-title":"Stochastic effects and bistability in T cell receptor signaling","volume":"254","author":"T Lipniacki","year":"2008","journal-title":"Journal of Theoretical Biology"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1186\/1471-2105-7-56","article-title":"A methodology for the structural and functional analysis of signaling and regulatory networks","volume":"7","author":"S Klamt","year":"2006","journal-title":"Bmc Bioinformatics"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"1580","DOI":"10.1371\/journal.pcbi.0030163","article-title":"A logical model provides insights into T cell receptor signaling","volume":"3","author":"J Saez-Rodriguez","year":"2007","journal-title":"Plos Computational Biology"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"5818","DOI":"10.1073\/pnas.97.11.5818","article-title":"Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties","volume":"97","author":"A Levchenko","year":"2000","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"issue":"11","key":"ref10","doi-asserted-by":"crossref","first-page":"e1002267","DOI":"10.1371\/journal.pcbi.1002267","article-title":"Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia","volume":"7","author":"A Saadatpour","year":"2011","journal-title":"PLoS Comput Biol"},{"issue":"6","key":"ref11","doi-asserted-by":"crossref","first-page":"645","DOI":"10.1002\/bit.10250","article-title":"Control of starvation-induced apoptosis in Chinese hamster ovary cell cultures","volume":"78","author":"L Simon","year":"2002","journal-title":"Biotechnology and Bioengineering"},{"issue":"1","key":"ref12","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s00449-003-0335-z","article-title":"Improvement of a mammalian cell culture process by adaptive, model-based dialysis fed-batch cultivation and suppression of apoptosis","volume":"26","author":"B Frahm","year":"2003","journal-title":"Bioprocess and Biosystems Engineering"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1109\/ACC.2009.5160288","article-title":"Targeting a fixed percentage of granulocyte differentiation using experiments designed via nonlinear model predictive control","volume":"1\u20139","author":"SL Noble","year":"2009","journal-title":"2009 American Control Conference"},{"issue":"2","key":"ref14","doi-asserted-by":"crossref","first-page":"456","DOI":"10.1109\/TBME.2011.2174361","article-title":"Sparse-Grid-Based Adaptive Model Predictive Control of HL60 Cellular Differentiation","volume":"59","author":"SL Noble","year":"2012","journal-title":"Ieee Transactions on Biomedical Engineering"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"14271","DOI":"10.1073\/pnas.1206810109","article-title":"Long-term model predictive control of gene expression at the population and single-cell levels","volume":"109","author":"J Uhlendorf","year":"2012","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1038\/nbt.2018","article-title":"In silico feedback for in vivo regulation of a gene expression circuit","volume":"29","author":"A Milias-Argeitis","year":"2011","journal-title":"Nature Biotechnology"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"837","DOI":"10.1038\/nmeth.1700","article-title":"Light-based feedback for controlling intracellular signaling dynamics","volume":"8","author":"JE Toettcher","year":"2011","journal-title":"Nature Methods"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1016\/B978-0-12-385075-1.00017-2","article-title":"Light Control of Plasma Membrane Recruitment Using the Phy-Pif System","volume":"497","author":"JE Toettcher","year":"2011","journal-title":"Methods in Enzymology, Vol 497: Synthetic Biology, Methods for Part\/Device Characterization and Chassis Engineering, Pt A"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"1265","DOI":"10.1016\/j.automatica.2011.01.073","article-title":"Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks","volume":"47","author":"F Menolascina","year":"2011","journal-title":"Automatica"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"396","DOI":"10.3166\/ejc.11.396-435","article-title":"Molecular systems biology and control","volume":"11","author":"ED Sontag","year":"2005","journal-title":"European Journal of Control"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1371\/journal.pcbi.0040030","article-title":"Stimulus design for model selection and validation in cell signaling","volume":"4","author":"JF Apgar","year":"2008","journal-title":"Plos Computational Biology"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"2341","DOI":"10.1109\/ACC.2009.5160486","article-title":"Robust nonlinear model predictive controller design based on multi-scenario formulation","volume":"1\u20139","author":"R Huang","year":"2009","journal-title":"2009 American Control Conference"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1007\/s12555-010-0122-y","article-title":"Robust Multi-model Predictive Control Using LMIs","volume":"8","author":"P Falugi","year":"2010","journal-title":"International Journal of Control Automation and Systems"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1109\/TBME.2003.808813","article-title":"Experimental studies on multiple-model predictive control for automated regulation of hemodynamic variables","volume":"50","author":"RR Rao","year":"2003","journal-title":"Ieee Transactions on Biomedical Engineering"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1007\/978-3-642-01094-1_12","article-title":"Multiple Model Predictive Control of Nonlinear Systems","volume":"384","author":"M Kuure-Kinsey","year":"2009","journal-title":"Nonlinear Model Predictive Control: Towards New Challenging Applications"},{"key":"ref26","unstructured":"Burnham KP, Anderson DR (2002) Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach. New York: Springer-Verlag."},{"key":"ref27","doi-asserted-by":"crossref","unstructured":"Dunlop MJ, Franco E, Murray RM. A multi-model approach to identification of Biosynthetic pathways; 2007 Jul 09\u201313; New York, NY. Ieee. pp. 3493\u20133498.","DOI":"10.1109\/ACC.2007.4282720"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1186\/1471-2105-11-233","article-title":"Odefy - From discrete to continuous models","volume":"11","author":"J Krumsiek","year":"2010","journal-title":"Bmc Bioinformatics"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1752-0509-3-98","article-title":"Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling","volume":"3","author":"DM Wittmann","year":"2009","journal-title":"Bmc Systems Biology"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"2909","DOI":"10.1109\/ACC.2011.5990834","article-title":"Feasible Parameter Space Characterization with Adaptive Sparse Grids for Nonlinear Systems Biology Models","author":"SL Noble","year":"2011","journal-title":"2011 American Control Conference"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"19078","DOI":"10.1074\/jbc.M501467200","article-title":"The benzo c phenanthridine alkaloid, sanguinarine, is a selective, cell-active inhibitor of mitogen-activated protein kinase phosphatase-1","volume":"280","author":"A Vogt","year":"2005","journal-title":"Journal of Biological Chemistry"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"18623","DOI":"10.1074\/jbc.273.29.18623","article-title":"Identification of a novel inhibitor of mitogen-activated protein kinase kinase","volume":"273","author":"MF Favata","year":"1998","journal-title":"Journal of Biological Chemistry"},{"key":"ref33","first-page":"29","article-title":"Multiobjective Optimal Control of HIV Dynamics","author":"H Zarei","year":"2010","journal-title":"Mathematical Problems in Engineering"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1007\/978-3-642-04045-0_24","article-title":"Multi-objective Model Predictive Control","volume":"634","author":"H Nakayama","year":"2010","journal-title":"Multiple Criteria Decision Making for Sustainable Energy and Transportation Systems: Proceedings of the 19th International Conference on Multiple Criteria Decision Making"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"457","DOI":"10.1016\/0377-2217(94)00307-6","article-title":"A note on the use of PROMETHEE multicriteria methods","volume":"89","author":"W DeKeyser","year":"1996","journal-title":"European Journal of Operational Research"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"2823","DOI":"10.1016\/j.automatica.2009.09.032","article-title":"Multiobjective model predictive control","volume":"45","author":"A Bemporad","year":"2009","journal-title":"Automatica"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"1080","DOI":"10.1038\/leu.2011.66","article-title":"Roles of the Ras\/Raf\/MEK\/ERK pathway in leukemia therapy","volume":"25","author":"LS Steelman","year":"2011","journal-title":"Leukemia"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"1765","DOI":"10.1038\/sj.leu.2403052","article-title":"Differential effects of kinase cascade inhibitors on neoplastic and cytokine-mediated cell proliferation","volume":"17","author":"JG Shelton","year":"2003","journal-title":"Leukemia"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1677\/erc.0.0080219","article-title":"Discovery of a novel Raf kinase inhibitor","volume":"8","author":"JF Lyons","year":"2001","journal-title":"Endocrine-Related Cancer"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1145\/1114268.1114275","article-title":"Algorithm 847: spinterp: Piecewise multilinear hierarchical sparse grid interpolation in MATLAB","volume":"31","author":"A Klimke","year":"2005","journal-title":"Acm Transactions on Mathematical Software"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"86","DOI":"10.1007\/s00158-002-0276-1","article-title":"The normalized normal constraint method for generating the Pareto frontier","volume":"25","author":"A Messac","year":"2003","journal-title":"Structural and Multidisciplinary Optimization"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003546","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,19]],"date-time":"2018-10-19T15:22:04Z","timestamp":1539962524000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003546"}},"subtitle":[],"editor":[{"given":"Casim A.","family":"Sarkar","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2014,4,10]]},"references-count":41,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2014,4,10]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1003546","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,4,10]]}}}