{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,18]],"date-time":"2026-07-18T09:24:40Z","timestamp":1784366680577,"version":"3.55.0"},"reference-count":24,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2014,8,14]],"date-time":"2014-08-14T00:00:00Z","timestamp":1407974400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1003790","type":"journal-article","created":{"date-parts":[[2014,8,14]],"date-time":"2014-08-14T18:14:57Z","timestamp":1408040097000},"page":"e1003790","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":38,"title":["MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis"],"prefix":"10.1371","volume":"10","author":[{"given":"Seungyeul","family":"Yoo","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tao","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joshua D.","family":"Campbell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eunjee","family":"Lee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhidong","family":"Tu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark W.","family":"Geraci","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Charles A.","family":"Powell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric E.","family":"Schadt","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Avrum","family":"Spira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2014,8,14]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"1197","DOI":"10.1101\/gr.132662.111","article-title":"Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression","volume":"22","author":"SA Selamat","year":"2012","journal-title":"Genome Res"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"e107","DOI":"10.1371\/journal.pbio.0060107","article-title":"Mapping the genetic architecture of gene expression in human liver","volume":"6","author":"EE Schadt","year":"2008","journal-title":"PLoS Biol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1038\/nature02797","article-title":"Genetic analysis of genome-wide variation in human gene expression","volume":"430","author":"M Morley","year":"2004","journal-title":"Nature"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"2104","DOI":"10.1093\/bioinformatics\/btr323","article-title":"MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects","volume":"27","author":"HJ Westra","year":"2011","journal-title":"Bioinformatics"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1038\/nature06757","article-title":"Variations in DNA elucidate molecular networks that cause disease","volume":"452","author":"Y Chen","year":"2008","journal-title":"Nature"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1038\/nature06758","article-title":"Genetics of gene expression and its effect on disease","volume":"452","author":"V Emilsson","year":"2008","journal-title":"Nature"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"e1000977","DOI":"10.1371\/journal.pgen.1000977","article-title":"An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits","volume":"6","author":"YH Hsu","year":"2010","journal-title":"PLoS Genet"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"e1000932","DOI":"10.1371\/journal.pgen.1000932","article-title":"Liver and adipose expression associated SNPs are enriched for association to type 2 diabetes","volume":"6","author":"H Zhong","year":"2010","journal-title":"PLoS Genet"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1093\/biostatistics\/kxq055","article-title":"Accurate genome-scale percentage DNA methylation estimates from microarray data","volume":"12","author":"MJ Aryee","year":"2011","journal-title":"Biostatistics"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1007\/s00439-011-0993-x","article-title":"Statistical approaches for the analysis of DNA methylation microarray data","volume":"129","author":"KD Siegmund","year":"2011","journal-title":"Hum Genet"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1353","DOI":"10.1093\/bioinformatics\/bts163","article-title":"Matrix eQTL: ultra fast eQTL analysis via large matrix operations","volume":"28","author":"AA Shabalin","year":"2012","journal-title":"Bioinformatics"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"780","DOI":"10.1101\/gr.7301508","article-title":"Comprehensive high-throughput arrays for relative methylation (CHARM)","volume":"18","author":"RA Irizarry","year":"2008","journal-title":"Genome Res"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1038\/nature11412","article-title":"Comprehensive molecular portraits of human breast tumours","volume":"490","year":"2012","journal-title":"Nature"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature07385","article-title":"Comprehensive genomic characterization defines human glioblastoma genes and core pathways","volume":"455","year":"2008","journal-title":"Nature"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1086\/519795","article-title":"PLINK: a tool set for whole-genome association and population-based linkage analyses","volume":"81","author":"S Purcell","year":"2007","journal-title":"Am J Hum Genet"},{"key":"ref16","first-page":"31","article-title":"Cost-effective prediction of gender-labeling errors and estimation of gender-labeling error rates in candidate-gene association studies","volume":"2","author":"C Qu","year":"2011","journal-title":"Front Genet"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1142\/S0219720010004823","article-title":"Probe-Level Universal Search (PLUS) algorithm for gender differentiation in affymetrix datasets","volume":"8","author":"AS Karyagyna","year":"2010","journal-title":"J Bioinform Comput Biol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"R211","DOI":"10.1093\/hmg\/ddp400","article-title":"The resolution of the genetics of gene expression","volume":"18","author":"SB Montgomery","year":"2009","journal-title":"Hum Mol Genet"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1038\/ng.2248","article-title":"Bayesian method to predict individual SNP genotypes from gene expression data","volume":"44","author":"EE Schadt","year":"2012","journal-title":"Nat Genet"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the False Discovery Rate - a Practical and Powerful Approach to Multiple Testing","volume":"57","author":"Y Benjamini","year":"1995","journal-title":"Journal of the Royal Statistical Society Series B-Methodological"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"R10","DOI":"10.1186\/gb-2011-12-1-r10","article-title":"DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines","volume":"12","author":"JT Bell","year":"2011","journal-title":"Genome Biol"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"e1000952","DOI":"10.1371\/journal.pgen.1000952","article-title":"Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain","volume":"6","author":"JR Gibbs","year":"2010","journal-title":"PLoS Genet"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"5331","DOI":"10.1038\/sj.onc.1204697","article-title":"Functional analysis of CpG methylation in the BRCA1 promoter region","volume":"20","author":"DN DiNardo","year":"2001","journal-title":"Oncogene"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1038\/nrg2341","article-title":"DNA methylation landscapes: provocative insights from epigenomics","volume":"9","author":"MM Suzuki","year":"2008","journal-title":"Nat Rev Genet"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003790","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,1]],"date-time":"2024-06-01T09:38:28Z","timestamp":1717234708000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003790"}},"subtitle":[],"editor":[{"given":"Xianghong Jasmine","family":"Zhou","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2014,8,14]]},"references-count":24,"journal-issue":{"issue":"8","published-online":{"date-parts":[[2014,8,14]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1003790","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,8,14]]}}}