{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,10]],"date-time":"2026-03-10T02:38:16Z","timestamp":1773110296895,"version":"3.50.1"},"reference-count":15,"publisher":"Public Library of Science (PLoS)","issue":"1","license":[{"start":{"date-parts":[[2015,1,8]],"date-time":"2015-01-08T00:00:00Z","timestamp":1420675200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1004008","type":"journal-article","created":{"date-parts":[[2015,1,8]],"date-time":"2015-01-08T15:30:54Z","timestamp":1420731054000},"page":"e1004008","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":66,"title":["A RESTful API for Accessing Microbial Community Data for MG-RAST"],"prefix":"10.1371","volume":"11","author":[{"given":"Andreas","family":"Wilke","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jared","family":"Bischof","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Travis","family":"Harrison","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tom","family":"Brettin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark","family":"D'Souza","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wolfgang","family":"Gerlach","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hunter","family":"Matthews","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tobias","family":"Paczian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jared","family":"Wilkening","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elizabeth M.","family":"Glass","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Narayan","family":"Desai","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Folker","family":"Meyer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2015,1,8]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1186\/1471-2105-9-386","article-title":"The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes","volume":"9","author":"F Meyer","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1038\/nbt.1823","article-title":"Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications","volume":"29(5)","author":"P Yilmaz","year":"2011","journal-title":"Nat Biotechnol"},{"key":"ref3","unstructured":"R. T. Fielding, chapter 5 of dissertation: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.ics.uci.edu\/~fielding\/pubs\/dissertation\/rest_arch_style.htmhttp:\/\/www.ics.uci.edu\/~fielding\/pubs\/dissertation\/rest_arch_style.htm\" xlink:type=\"simple\">http:\/\/www.ics.uci.edu\/~fielding\/pubs\/dissertation\/rest_arch_style.htmhttp:\/\/www.ics.uci.edu\/~fielding\/pubs\/dissertation\/rest_arch_style.htm<\/ext-link>"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1186\/1471-2105-13-141","article-title":"The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools","volume":"13","author":"A Wilke","year":"2012","journal-title":"BMC Bioinformatics 21"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/2047-217X-1-7","article-title":"The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome","volume":"1(1)","author":"D McDonald","year":"2012","journal-title":"Gigascience 12"},{"key":"ref6","first-page":"656","article-title":"Genome Res","volume":"12(4)","author":"WJ Kent","year":"2002"},{"key":"ref7","unstructured":"NHGRI web page: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.genome.gov\/http:\/\/www.genome.gov\/\" xlink:type=\"simple\">http:\/\/www.genome.gov\/http:\/\/www.genome.gov\/<\/ext-link>"},{"key":"ref8","doi-asserted-by":"crossref","unstructured":"Wilkening J, Wilke A, Desai N, Meyer F. (2009) Using clouds for metagenomics: a case study, IEEE International Conference on Cluster Computing and Workshops, CLUSTER&apos;09.","DOI":"10.1109\/CLUSTR.2009.5289187"},{"key":"ref9","doi-asserted-by":"crossref","unstructured":"Coggill P, Finn RD, Bateman A. (2008) Identifying protein domains with the Pfam database. Curr Protoc Bioinformatics. Chapter 2: Unit 2.5.","DOI":"10.1002\/0471250953.bi0205s23"},{"key":"ref10","doi-asserted-by":"crossref","unstructured":"Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, <etal>et al<\/etal>. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 40(Database issue): D306\u201312.","DOI":"10.1093\/nar\/gkr948"},{"key":"ref11","doi-asserted-by":"crossref","unstructured":"Afrasiabi C, Samad B, Dineen D, Meacham C, Sj\u00f6lander K. (2013) The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification. Nucleic Acids Res 41(Web Server issue): W242\u20138.","DOI":"10.1093\/nar\/gkt399"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"636","DOI":"10.1038\/nmeth0909-636","article-title":"The &apos;rare biosphere&apos;: a reality check","volume":"6(9)","author":"J Reeder","year":"2009","journal-title":"Nat Methods"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"e1002541","DOI":"10.1371\/journal.pcbi.1002541","article-title":"A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE","volume":"8(6)","author":"KP Keegan","year":"2012","journal-title":"PLoS Comput Biol"},{"key":"ref14","unstructured":"JSON web page: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.json.org\" xlink:type=\"simple\">http:\/\/www.json.org<\/ext-link>"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1186\/1471-2105-11-319","article-title":"Accessing the SEED genome databases via Web services API: tools for programmers","volume":"11","author":"T Disz","year":"2010","journal-title":"BMC Bioinformatics 14"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1004008","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,22]],"date-time":"2018-10-22T14:40:31Z","timestamp":1540219231000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1004008"}},"subtitle":[],"editor":[{"given":"Paul P.","family":"Gardner","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2015,1,8]]},"references-count":15,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2015,1,8]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1004008","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,1,8]]}}}