{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T13:07:56Z","timestamp":1740143276110,"version":"3.37.3"},"reference-count":59,"publisher":"Public Library of Science (PLoS)","issue":"10","license":[{"start":{"date-parts":[[2015,10,9]],"date-time":"2015-10-09T00:00:00Z","timestamp":1444348800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1004528","type":"journal-article","created":{"date-parts":[[2015,10,9]],"date-time":"2015-10-09T17:57:36Z","timestamp":1444413456000},"page":"e1004528","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":5,"title":["Modelling Odor Decoding in the Antennal Lobe by Combining Sequential Firing Rate Models with Bayesian Inference"],"prefix":"10.1371","volume":"11","author":[{"given":"Dario","family":"Cuevas Rivera","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sebastian","family":"Bitzer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefan J.","family":"Kiebel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2015,10,9]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1146\/annurev.ne.19.030196.002505","article-title":"Information Coding in the Vertebrate Olfactory System","volume":"19","author":"LB Buck","year":"1996","journal-title":"Annu Rev Neurosci"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1146\/annurev.neuro.29.051605.112950","article-title":"Early Events in Olfactory Processing","volume":"29","author":"RI Wilson","year":"2006","journal-title":"Annu Rev Neurosci"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1016\/S0166-2236(96)10054-0","article-title":"Dynamical representation of odors by oscillating and evolving neural assemblies","volume":"19","author":"G Laurent","year":"1996","journal-title":"Trends Neurosci"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"1872","DOI":"10.1126\/science.265.5180.1872","article-title":"Encoding of olfactory information with oscillating neural assemblies","volume":"265","author":"G Laurent","year":"1994","journal-title":"Science"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1126\/science.1070502","article-title":"Oscillations and sparsening of odor representations in the mushroom body","volume":"297","author":"J Perez-Orive","year":"2002","journal-title":"Science"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1016\/j.neuron.2003.08.011","article-title":"Intensity versus Identity Coding in an Olfactory System","volume":"39","author":"M Stopfer","year":"2003","journal-title":"Neuron"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1016\/j.neuron.2005.09.032","article-title":"Transient Dynamics versus Fixed Points in Odor Representations by Locust Antennal Lobe Projection Neurons","volume":"48","author":"O Mazor","year":"2005","journal-title":"Neuron"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"3303","DOI":"10.1152\/jn.00397.2005","article-title":"Sparsening and Temporal Sharpening of Olfactory Representations in the Honeybee Mushroom Bodies","volume":"94","author":"P Szyszka","year":"2005","journal-title":"J Neurophysiol"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"O10","DOI":"10.1186\/1471-2202-10-S1-O10","article-title":"Sequential sparsing by successive adapting neural populations","volume":"10","author":"F Farkhooi","year":"2009","journal-title":"BMC Neurosci"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1101\/lm.5.1.124","article-title":"Spatiotemporal structure of olfactory inputs to the mushroom bodies","volume":"5","author":"G Laurent","year":"1998","journal-title":"Learn Mem"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1146\/annurev.neuro.24.1.263","article-title":"Odor encoding as an active, dynamical process: experiments, computation, and theory","volume":"24","author":"G Laurent","year":"2001","journal-title":"Annu Rev Neurosci"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"2089","DOI":"10.1016\/j.physd.2009.08.002","article-title":"Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models","volume":"238","author":"J Daunizeau","year":"2009","journal-title":"Phys Nonlinear Phenom"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"e621670","DOI":"10.1155\/2010\/621670","article-title":"Generalised Filtering","volume":"2010","author":"K Friston","year":"2010","journal-title":"Math Probl Eng"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"e1000464","DOI":"10.1371\/journal.pcbi.1000464","article-title":"Recognizing Sequences of Sequences","volume":"5","author":"SJ Kiebel","year":"2009","journal-title":"PLoS Comput Biol"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1038\/nrn2558","article-title":"State-dependent computations: spatiotemporal processing in cortical networks","volume":"10","author":"DV Buonomano","year":"2009","journal-title":"Nat Rev Neurosci"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1016\/j.jphysparis.2006.10.001","article-title":"A free energy principle for the brain","volume":"100","author":"K Friston","year":"2006","journal-title":"J Physiol Paris"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"20","DOI":"10.3389\/neuro.11.020.2009","article-title":"Perception and hierarchical dynamics","volume":"3","author":"SJ Kiebel","year":"2009","journal-title":"Front Neuroinformatics"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1016\/j.tins.2004.10.007","article-title":"The Bayesian brain: the role of uncertainty in neural coding and computation","volume":"27","author":"DC Knill","year":"2004","journal-title":"Trends Neurosci"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"1432","DOI":"10.1038\/nn1790","article-title":"Bayesian inference with probabilistic population codes","volume":"9","author":"WJ Ma","year":"2006","journal-title":"Nat Neurosci"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"734","DOI":"10.1152\/jn.01283.2007","article-title":"Olfactory Representations by Drosophila Mushroom Body Neurons","volume":"99","author":"GC Turner","year":"2008","journal-title":"J Neurophysiol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"068102","DOI":"10.1103\/PhysRevLett.87.068102","article-title":"Dynamical Encoding by Networks of Competing Neuron Groups: Winnerless Competition","volume":"87","author":"M Rabinovich","year":"2001","journal-title":"Phys Rev Lett"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1123","DOI":"10.1063\/1.1819625","article-title":"On the origin of reproducible sequential activity in neural circuits","volume":"14","author":"VS Afraimovich","year":"2004","journal-title":"Chaos Woodbury N"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1126\/science.1201835","article-title":"Normalization for Sparse Encoding of Odors by a Wide-Field Interneuron","volume":"332","author":"M Papadopoulou","year":"2011","journal-title":"Science"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1126\/science.291.5505.889","article-title":"Dynamic Optimization of Odor Representations by Slow Temporal Patterning of Mitral Cell Activity","volume":"291","author":"RW Friedrich","year":"2001","journal-title":"Science"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"467","DOI":"10.1016\/j.neuron.2006.07.018","article-title":"Encoding and Decoding of Overlapping Odor Sequences","volume":"51","author":"BM Broome","year":"2006","journal-title":"Neuron"},{"key":"ref26","article-title":"Functional feedback from mushroom bodies to antennal lobes in the Drosophila olfactory pathway","author":"A Hu","year":"2010","journal-title":"Proc Natl Acad Sci"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1002\/(SICI)1096-9861(19960902)372:4<487::AID-CNE1>3.0.CO;2-0","article-title":"GABAergic synapses in the antennal lobe and mushroom body of the locust olfactory system","volume":"372","author":"B Leitch","year":"1996","journal-title":"J Comp Neurol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"1784","DOI":"10.1111\/ejn.12558","article-title":"Olfactory coding in the insect brain: data and conjectures","volume":"39","author":"CG Galizia","year":"2014","journal-title":"Eur J Neurosci"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1016\/S0896-6273(01)00286-0","article-title":"Model of Cellular and Network Mechanisms for Odor-Evoked Temporal Patterning in the Locust Antennal Lobe","volume":"30","author":"M Bazhenov","year":"2001","journal-title":"Neuron"},{"key":"ref30","first-page":"865","article-title":"Maintaining Accuracy at the Expense of Speed: Stimulus Similarity Defines Odor Discrimination Time in Mice","volume":"44","author":"NM Abraham","year":"2004","journal-title":"Neuron"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"1224","DOI":"10.1038\/nn1142","article-title":"Speed and accuracy of olfactory discrimination in the rat","volume":"6","author":"N Uchida","year":"2003","journal-title":"Nat Neurosci"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1037\/a0014040","article-title":"A honeybee\u2019s ability to learn, recognize, and discriminate odors depends upon odor sampling time and concentration","volume":"123","author":"GA Wright","year":"2009","journal-title":"Behav Neurosci"},{"key":"ref33","doi-asserted-by":"crossref","unstructured":"Rinberg D. Speed-accuracy tradeoff in olfaction. 2006;","DOI":"10.1016\/j.neuron.2006.07.013"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"781","DOI":"10.1093\/chemse\/bjg070","article-title":"Odor Similarity Does Not Influence the Time Needed for Odor Processing","volume":"28","author":"M Ditzen","year":"2003","journal-title":"Chem Senses"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"15802","DOI":"10.1523\/JNEUROSCI.3063-11.2011","article-title":"When attention wanders: how uncontrolled fluctuations in attention affect performance","volume":"31","author":"MR Cohen","year":"2011","journal-title":"J Neurosci Off J Soc Neurosci"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1016\/j.tics.2008.09.004","article-title":"State-dependency in brain stimulation studies of perception and cognition","volume":"12","author":"J Silvanto","year":"2008","journal-title":"Trends Cogn Sci"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1016\/S0166-2236(96)80019-1","article-title":"Integrator or coincidence detector? The role of the cortical neuron revisited","volume":"19","author":"P Konig","year":"1996","journal-title":"Trends Neurosci"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"6037","DOI":"10.1523\/JNEUROSCI.1084-04.2004","article-title":"Intrinsic and Circuit Properties Favor Coincidence Detection for Decoding Oscillatory Input","volume":"24","author":"J Perez-Orive","year":"2004","journal-title":"J Neurosci"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"1246","DOI":"10.1016\/j.neuron.2013.08.026","article-title":"Encoding of Mixtures in a Simple Olfactory System","volume":"80","author":"K Shen","year":"2013","journal-title":"Neuron"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"586","DOI":"10.1016\/j.neuron.2008.02.011","article-title":"Dynamic Ensemble Odor Coding in the Mammalian Olfactory Bulb: Sensory Information at Different Timescales","volume":"57","author":"B Bathellier","year":"2008","journal-title":"Neuron"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1016\/j.neuron.2007.03.010","article-title":"Excitatory Interactions Between Olfactory Processing Channels in the Drosophila Antennal Lobe","volume":"54","author":"SR Olsen","year":"2007","journal-title":"Neuron"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"695","DOI":"10.1016\/j.neuron.2012.10.038","article-title":"Canonical Microcircuits for Predictive Coding","volume":"76","author":"AM Bastos","year":"2012","journal-title":"Neuron"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1098\/rstb.2005.1622","article-title":"A theory of cortical responses","volume":"360","author":"K Friston","year":"2005","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"key":"ref44","unstructured":"Wilson R, Finkel L. A Neural Implementation of the Kalman Filter. In: Bengio Y, Schuurmans D, Lafferty J, Williams CKI, Culotta A, editors. Advances in Neural Information Processing Systems 22. 2009. pp. 2062\u20132070."},{"key":"ref45","doi-asserted-by":"crossref","first-page":"1170","DOI":"10.1038\/nn.3495","article-title":"Probabilistic brains: knowns and unknowns","volume":"16","author":"A Pouget","year":"2013","journal-title":"Nat Neurosci"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1007\/s10827-011-0318-z","article-title":"A reafferent and feed-forward model of song syntax generation in the Bengalese finch","volume":"31","author":"A Hanuschkin","year":"2011","journal-title":"J Comput Neurosci"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1126\/science.1093173","article-title":"Synfire Chains and Cortical Songs: Temporal Modules of Cortical Activity","volume":"304","author":"Y Ikegaya","year":"2004","journal-title":"Science"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"60006","DOI":"10.1209\/0295-5075\/86\/60006","article-title":"Sequentially activated groups in neural networks","volume":"86","author":"MA Komarov","year":"2009","journal-title":"EPL Europhys Lett"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"5894","DOI":"10.1523\/JNEUROSCI.5540-09.2010","article-title":"Sequentially Switching Cell Assemblies in Random Inhibitory Networks of Spiking Neurons in the Striatum","volume":"30","author":"A Ponzi","year":"2010","journal-title":"J Neurosci"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"18772","DOI":"10.1073\/pnas.0705546104","article-title":"Natural stimuli evoke dynamic sequences of states in sensory cortical ensembles","volume":"104","author":"LM Jones","year":"2007","journal-title":"Proc Natl Acad Sci"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"e1002303","DOI":"10.1371\/journal.pcbi.1002303","article-title":"A Hierarchical Neuronal Model for Generation and Online Recognition of Birdsongs","volume":"7","author":"IB Yildiz","year":"2011","journal-title":"PLoS Comput Biol"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"e1003219","DOI":"10.1371\/journal.pcbi.1003219","article-title":"From Birdsong to Human Speech Recognition: Bayesian Inference on a Hierarchy of Nonlinear Dynamical Systems","volume":"9","author":"IB Yildiz","year":"2013","journal-title":"PLoS Comput Biol"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1016\/j.neuroimage.2012.10.024","article-title":"Associating spontaneous with evoked activity in a neural mass model of visual cortex","volume":"66","author":"Trong M Nguyen","year":"2013","journal-title":"NeuroImage"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1007\/s00422-011-0424-z","article-title":"Action understanding and active inference","volume":"104","author":"K Friston","year":"2011","journal-title":"Biol Cybern"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"80","DOI":"10.3389\/fnsys.2011.00080","article-title":"Free energy and dendritic self-organization","volume":"5","author":"SJ Kiebel","year":"2011","journal-title":"Front Syst Neurosci"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1016\/0022-0396(89)90133-2","article-title":"A new class of Volterra differential equations for which the solutions are globally asymptotically stable","volume":"82","author":"R Redheffer","year":"1989","journal-title":"J Differ Equ"},{"key":"ref57","doi-asserted-by":"crossref","unstructured":"Julier SJ, Uhlmann JK. New extension of the Kalman filter to nonlinear systems. Proc SPIE 3068, Signal Processing, Sensor Fusion, and Target Recognition VI. 1997. pp. 182\u2013193. <comment>doi: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/dx.doi.org\/10.1117\/12.280797\" xlink:type=\"simple\">10.1117\/12.280797<\/ext-link><\/comment>","DOI":"10.1117\/12.280797"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"3147","DOI":"10.4249\/scholarpedia.3147","article-title":"Runge-Kutta methods","volume":"2","author":"J Butcher","year":"2007","journal-title":"Scholarpedia"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"1349","DOI":"10.4249\/scholarpedia.1349","article-title":"FitzHugh-Nagumo model","volume":"1","author":"E Izhikevich","year":"2006","journal-title":"Scholarpedia"}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1004528","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,22]],"date-time":"2022-05-22T23:18:59Z","timestamp":1653261539000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1004528"}},"subtitle":[],"editor":[{"given":"Konrad P.","family":"Kording","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2015,10,9]]},"references-count":59,"journal-issue":{"issue":"10","published-online":{"date-parts":[[2015,10,9]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1004528","relation":{},"ISSN":["1553-7358"],"issn-type":[{"type":"electronic","value":"1553-7358"}],"subject":[],"published":{"date-parts":[[2015,10,9]]}}}