{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T10:19:54Z","timestamp":1767176394192,"version":"build-2238731810"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1005362","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2017,2,6]],"date-time":"2017-02-06T00:00:00Z","timestamp":1486339200000}}],"reference-count":55,"publisher":"Public Library of Science (PLoS)","issue":"1","license":[{"start":{"date-parts":[[2017,1,23]],"date-time":"2017-01-23T00:00:00Z","timestamp":1485129600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Deutsche Forschungsgemeinschaft (DE)","award":["TRR60\/A2"],"award-info":[{"award-number":["TRR60\/A2"]}]},{"name":"Deutsche Forschungsgemeinschaft (DE)","award":["TRR60\/B1"],"award-info":[{"award-number":["TRR60\/B1"]}]},{"name":"Deutsche Forschungsgemeinschaft (DE)","award":["KU1315\/8-1"],"award-info":[{"award-number":["KU1315\/8-1"]}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1005362","type":"journal-article","created":{"date-parts":[[2017,1,23]],"date-time":"2017-01-23T14:33:03Z","timestamp":1485181983000},"page":"e1005362","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":18,"title":["Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes"],"prefix":"10.1371","volume":"13","author":[{"given":"Mohammadkarim","family":"Saeedghalati","sequence":"first","affiliation":[]},{"given":"Farnoush","family":"Farahpour","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9313-8636","authenticated-orcid":true,"given":"Bettina","family":"Budeus","sequence":"additional","affiliation":[]},{"given":"Anja","family":"Lange","sequence":"additional","affiliation":[]},{"given":"Astrid M.","family":"Westendorf","sequence":"additional","affiliation":[]},{"given":"Marc","family":"Seifert","sequence":"additional","affiliation":[]},{"given":"Ralf","family":"K\u00fcppers","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2973-7869","authenticated-orcid":true,"given":"Daniel","family":"Hoffmann","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2017,1,23]]},"reference":[{"key":"ref1","article-title":"Community Ecology","author":"PJ Morin","year":"1999"},{"key":"ref2","article-title":"On the Origin of Species","author":"C Darwin","year":"1859"},{"key":"ref3","article-title":"Measuring Biological Diversity","author":"AE Magurran","year":"2004"},{"issue":"2","key":"ref4","doi-asserted-by":"crossref","first-page":"427","DOI":"10.2307\/1934352","article-title":"Diversity and Evenness: A Unifying Notation and Its Consequences","volume":"54","author":"MO Hill","year":"1973","journal-title":"Ecology"},{"issue":"10","key":"ref5","doi-asserted-by":"crossref","first-page":"995","DOI":"10.1111\/j.1461-0248.2007.01094.x","article-title":"Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework","volume":"10","author":"BJ McGill","year":"2007","journal-title":"Ecol Lett"},{"key":"ref6","article-title":"Oxford biology","author":"AE Magurran","year":"2011"},{"issue":"5","key":"ref7","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1080\/00107510500052444","article-title":"Power laws, Pareto distributions and Zipf\u2019s law","volume":"46","author":"M Newman","year":"2005","journal-title":"Contemporary Physics"},{"key":"ref8","first-page":"81","article-title":"Ecology and evolution of communities","author":"RM May","year":"1975"},{"issue":"12","key":"ref9","doi-asserted-by":"crossref","first-page":"e14139","DOI":"10.1371\/journal.pone.0014139","article-title":"Zipf\u2019s law leads to Heaps\u2019 law: analyzing their relation in finite-size systems","volume":"5","author":"L L\u00fc","year":"2010","journal-title":"PLoS One"},{"key":"ref10","first-page":"379","article-title":"On the statistical treatment of communities","volume":"44","author":"I Motomura","year":"1932","journal-title":"Zool Mag"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"42","DOI":"10.2307\/1411","article-title":"The relation between the number of species and the number of individuals in a random sample of an animal population","volume":"12","author":"RA Fisher","year":"1943","journal-title":"Journal of Animal Ecology"},{"issue":"3","key":"ref12","doi-asserted-by":"crossref","first-page":"254+","DOI":"10.2307\/1930989","article-title":"The Commonness, And Rarity, of Species","volume":"29","author":"FW Preston","year":"1948","journal-title":"Ecology"},{"issue":"3","key":"ref13","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1073\/pnas.43.3.293","article-title":"On the relative abundance of bird species","volume":"43","author":"RH MacArthur","year":"1957","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref14","article-title":"The Unified Neutral Theory of Biodiversity and Biogeography","author":"S Hubbell","year":"2001"},{"key":"ref15","article-title":"Theoretical Ecology: Principles and Applications","author":"R May","year":"2007"},{"issue":"1015","key":"ref16","doi-asserted-by":"crossref","first-page":"545","DOI":"10.1098\/rstb.1979.0045","article-title":"Pollution-Induced Changes in Populations [and Discussion]","volume":"286","author":"JS Gray","year":"1979","journal-title":"Philosophical Transactions of the Royal Society of London B: Biological Sciences"},{"issue":"1","key":"ref17","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1111\/j.1541-0420.2009.01263.x","article-title":"The analysis of biodiversity using rank abundance distributions","volume":"66","author":"SD Foster","year":"2010","journal-title":"Biometrics"},{"issue":"2","key":"ref18","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1111\/1365-2664.12380","article-title":"On the species abundance distribution in applied ecology and biodiversity management","volume":"52","author":"TJ Matthews","year":"2015","journal-title":"J Appl Ecol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/S0065-2504(08)60042-2","article-title":"Species Abundance Patterns and Community Structure","volume":"24","author":"M Tokeshi","year":"1993","journal-title":"Advances in Ecological Research"},{"issue":"4","key":"ref20","doi-asserted-by":"crossref","first-page":"e1003531","DOI":"10.1371\/journal.pcbi.1003531","article-title":"Waste not, want not: why rarefying microbiome data is inadmissible","volume":"10","author":"PJ McMurdie","year":"2014","journal-title":"PLoS Comput Biol"},{"issue":"925","key":"ref21","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1086\/282541","article-title":"Marine Benthic Diversity: A Comparative Study","volume":"102","author":"HL Sanders","year":"1968","journal-title":"The American Naturalist"},{"issue":"1","key":"ref22","doi-asserted-by":"crossref","first-page":"e1002863","DOI":"10.1371\/journal.pcbi.1002863","article-title":"A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets","volume":"9","author":"O Koren","year":"2013","journal-title":"PLoS Comput Biol"},{"key":"ref23","article-title":"Immunobiology: The Immune System in Health and Disease","author":"C Janeway","year":"2001"},{"issue":"5909","key":"ref24","doi-asserted-by":"crossref","first-page":"575","DOI":"10.1038\/302575a0","article-title":"Somatic generation of antibody diversity","volume":"302","author":"S Tonegawa","year":"1983","journal-title":"Nature"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0065-2776(08)60426-5","article-title":"Organization of the human immunoglobulin heavy-chain locus","volume":"62","author":"F Matsuda","year":"1996","journal-title":"Adv Immunol"},{"issue":"5667","key":"ref26","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1126\/science.1093857","article-title":"Environmental genome shotgun sequencing of the Sargasso Sea","volume":"304","author":"JC Venter","year":"2004","journal-title":"Science"},{"issue":"5721","key":"ref27","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1126\/science.1107851","article-title":"Comparative metagenomics of microbial communities","volume":"308","author":"SG Tringe","year":"2005","journal-title":"Science"},{"issue":"7402","key":"ref28","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/nature11234","article-title":"Structure, function and diversity of the healthy human microbiome","volume":"486","year":"2012","journal-title":"Nature"},{"issue":"6086","key":"ref29","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1126\/science.1224203","article-title":"The application of ecological theory toward an understanding of the human microbiome","volume":"336","author":"EK Costello","year":"2012","journal-title":"Science"},{"issue":"11","key":"ref30","doi-asserted-by":"crossref","first-page":"e280","DOI":"10.1371\/journal.pbio.0060280","article-title":"The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing","volume":"6","author":"L Dethlefsen","year":"2008","journal-title":"PLoS Biol"},{"issue":"7402","key":"ref31","doi-asserted-by":"crossref","first-page":"222","DOI":"10.1038\/nature11053","article-title":"Human gut microbiome viewed across age and geography","volume":"486","author":"T Yatsunenko","year":"2012","journal-title":"Nature"},{"issue":"Suppl 1","key":"ref32","doi-asserted-by":"crossref","first-page":"4516","DOI":"10.1073\/pnas.1000080107","article-title":"Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample","volume":"108","author":"JG Caporaso","year":"2011","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"38","key":"ref33","doi-asserted-by":"crossref","first-page":"E5281","DOI":"10.1073\/pnas.1511270112","article-title":"Complexity of the human memory B-cell compartment is determined by the versatility of clonal diversification in germinal centers","volume":"112","author":"B Budeus","year":"2015","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"ref34","doi-asserted-by":"crossref","first-page":"e61217","DOI":"10.1371\/journal.pone.0061217","article-title":"phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data","volume":"8","author":"PJ McMurdie","year":"2013","journal-title":"PLoS One"},{"key":"ref35","article-title":"R: A Language and Environment for Statistical Computing","year":"2015"},{"issue":"3\/4","key":"ref36","doi-asserted-by":"crossref","first-page":"325","DOI":"10.2307\/2333639","article-title":"Some Distance Properties of Latent Root and Vector Methods Used in Multivariate Analysis","volume":"53","author":"JC Gower","year":"1966","journal-title":"Biometrika"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1023\/A:1010933404324","article-title":"Random Forests","volume":"45","author":"L Breiman","year":"2001","journal-title":"Machine Learning"},{"issue":"3","key":"ref38","first-page":"18","article-title":"Classification and Regression by randomForest","volume":"2","author":"A Liaw","year":"2002","journal-title":"R News"},{"issue":"1","key":"ref39","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1177\/001316446002000104","article-title":"A Coefficient of Agreement for Nominal Scales","volume":"20","author":"J Cohen","year":"1960","journal-title":"Educational and Psychological Measurement"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"164","DOI":"10.1090\/qam\/10666","article-title":"A Method for the Solution of Certain Non-Linear Problems in Least Squares","volume":"2","author":"K Levenberg","year":"1944","journal-title":"Quarterly of Applied Mathematics"},{"issue":"1","key":"ref41","doi-asserted-by":"crossref","first-page":"35","DOI":"10.2307\/3235896","article-title":"Methods for fitting dominance\/diversity curves","volume":"2","author":"JB Wilson","year":"1991","journal-title":"Journal of Vegetation Science"},{"key":"ref42","unstructured":"Oksanen, J, Blanchet, FG, Kindt, R, Legendre, P, Minchin, PR, O\u2019Hara, RB, et al. vegan: Community Ecology Package; 2015. Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/CRAN.R-project.org\/package=vegan\" xlink:type=\"simple\">http:\/\/CRAN.R-project.org\/package=vegan<\/ext-link>."},{"issue":"5","key":"ref43","doi-asserted-by":"crossref","first-page":"2393","DOI":"10.4049\/jimmunol.1301279","article-title":"Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies","volume":"191","author":"NM Choi","year":"2013","journal-title":"J Immunol"},{"issue":"4","key":"ref44","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1016\/j.cell.2015.10.016","article-title":"Chromosomal Loop Domains Direct the Recombination of Antigen Receptor Genes","volume":"163","author":"J Hu","year":"2015","journal-title":"Cell"},{"issue":"12","key":"ref45","doi-asserted-by":"crossref","first-page":"2659","DOI":"10.1084\/jem.20091087","article-title":"Molecular footprints of a germinal center derivation of human IgM+(IgD+)CD27+ B cells and the dynamics of memory B cell generation","volume":"206","author":"M Seifert","year":"2009","journal-title":"J Exp Med"},{"issue":"6","key":"ref46","doi-asserted-by":"crossref","first-page":"3728","DOI":"10.4049\/jimmunol.177.6.3728","article-title":"A new memory CD27-IgG+ B cell population in peripheral blood expressing VH genes with low frequency of somatic mutation","volume":"177","author":"JF Fecteau","year":"2006","journal-title":"J Immunol"},{"issue":"8","key":"ref47","doi-asserted-by":"crossref","first-page":"729","DOI":"10.1038\/icb.2014.44","article-title":"Human immunoglobulin classes and subclasses show variability in VDJ gene mutation levels","volume":"92","author":"KJL Jackson","year":"2014","journal-title":"Immunol Cell Biol"},{"issue":"924","key":"ref48","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1086\/282533","article-title":"Alternate Derivations of a Species-Abundance Relation","volume":"102","author":"JE Cohen","year":"1968","journal-title":"The American Naturalist"},{"issue":"6","key":"ref49","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1086\/283669","article-title":"Minimal community structure: an explanation of species abundance patterns","volume":"116","author":"G Sugihara","year":"1980","journal-title":"American Naturalist"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.2307\/5036","article-title":"Niche apportionment or random assortment: species abundance patterns revisited","volume":"59","author":"M Tokeshi","year":"1990","journal-title":"Journal of Animal Ecology"},{"key":"ref51","article-title":"Elements of information theory","author":"TM Cover","year":"2006"},{"key":"ref52","doi-asserted-by":"crossref","DOI":"10.2307\/jj.28833753","article-title":"Community ecology: analytical methods using R and Excel","author":"M Gardener","year":"2014"},{"key":"ref53","article-title":"A field guide to the birds of Borneo, Sumatra, Java, and Bali: the Greater Sunda Islands","author":"J MacKinnon","year":"1993"},{"issue":"12","key":"ref54","doi-asserted-by":"crossref","first-page":"e27310","DOI":"10.1371\/journal.pone.0027310","article-title":"Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies","volume":"6","author":"PD Schloss","year":"2011","journal-title":"PLoS One"},{"issue":"1","key":"ref55","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1038\/ismej.2011.74","article-title":"Illumina-based analysis of microbial community diversity","volume":"6","author":"PH Degnan","year":"2012","journal-title":"ISME J"}],"updated-by":[{"DOI":"10.1371\/journal.pcbi.1005362","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2017,2,6]],"date-time":"2017-02-06T00:00:00Z","timestamp":1486339200000}}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1005362","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,14]],"date-time":"2025-06-14T14:55:24Z","timestamp":1749912924000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1005362"}},"subtitle":[],"editor":[{"given":"Thomas","family":"Matthews","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2017,1,23]]},"references-count":55,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2017,1,23]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1005362","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,1,23]]}}}