{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,1]],"date-time":"2026-06-01T23:44:44Z","timestamp":1780357484719,"version":"3.54.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1005557","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2017,6,9]],"date-time":"2017-06-09T00:00:00Z","timestamp":1496966400000}}],"reference-count":57,"publisher":"Public Library of Science (PLoS)","issue":"5","license":[{"start":{"date-parts":[[2017,5,25]],"date-time":"2017-05-25T00:00:00Z","timestamp":1495670400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1005557","type":"journal-article","created":{"date-parts":[[2017,5,25]],"date-time":"2017-05-25T17:26:46Z","timestamp":1495733206000},"page":"e1005557","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":68,"title":["Predicting cryptic links in host-parasite networks"],"prefix":"10.1371","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3328-9958","authenticated-orcid":true,"given":"Tad","family":"Dallas","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4080-7274","authenticated-orcid":true,"given":"Andrew W","family":"Park","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John M","family":"Drake","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2017,5,25]]},"reference":[{"issue":"4","key":"ref1","doi-asserted-by":"crossref","first-page":"811","DOI":"10.1111\/j.1365-2656.2010.01688.x","article-title":"Nestedness versus modularity in ecological networks: two sides of the same coin?","volume":"79","author":"MA Fortuna","year":"2010","journal-title":"Journal of Animal Ecology"},{"issue":"6195","key":"ref2","doi-asserted-by":"crossref","first-page":"1253497","DOI":"10.1126\/science.1253497","article-title":"On the structural stability of mutualistic systems","volume":"345","author":"RP Rohr","year":"2014","journal-title":"Science"},{"issue":"5993","key":"ref3","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1126\/science.1188321","article-title":"Stability of ecological communities and the architecture of mutualistic and trophic networks","volume":"329","author":"E Th\u00e9bault","year":"2010","journal-title":"Science"},{"issue":"7","key":"ref4","doi-asserted-by":"crossref","first-page":"866","DOI":"10.1111\/oik.00707","article-title":"Relative importance of host environment, transmission potential and host phylogeny to the structure of parasite metacommunities","volume":"123","author":"T Dallas","year":"2014","journal-title":"Oikos"},{"issue":"3","key":"ref5","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.tree.2006.11.005","article-title":"Emphasizing the ecology in parasite community ecology","volume":"22","author":"AB Pedersen","year":"2007","journal-title":"Trends in ecology & evolution"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1093\/acprof:oso\/9780198529873.003.0003","article-title":"Are there general laws in parasite community ecology? The emergence of spatial parasitology and epidemiology","author":"JF Gu\u00e9gan","year":"2005","journal-title":"Parasitism and ecosystems"},{"issue":"4","key":"ref7","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1890\/110016","article-title":"Diverse effects of parasites in ecosystems: linking interdependent processes","volume":"10","author":"MJ Hatcher","year":"2012","journal-title":"Frontiers in Ecology and the Environment"},{"issue":"4","key":"ref8","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1111\/j.1461-0248.2006.00885.x","article-title":"Effects of species diversity on disease risk","volume":"9","author":"F Keesing","year":"2006","journal-title":"Ecology Letters"},{"issue":"6001","key":"ref9","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1126\/science.1190333","article-title":"Species interactions in a parasite community drive infection risk in a wildlife population","volume":"330","author":"S Telfer","year":"2010","journal-title":"Science"},{"issue":"1","key":"ref10","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1111\/j.1600-0706.2012.20211.x","article-title":"Predicting the similarity of parasite communities in freshwater fishes using the phylogeny, ecology and proximity of hosts","volume":"122","author":"SA Locke","year":"2013","journal-title":"Oikos"},{"issue":"12","key":"ref11","doi-asserted-by":"crossref","first-page":"1370","DOI":"10.1111\/j.1461-0248.2012.01858.x","article-title":"Phylogenetic host specificity and understanding parasite sharing in primates","volume":"15","author":"N Cooper","year":"2012","journal-title":"Ecology letters"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"17","DOI":"10.12775\/v10090-009-0014-z","article-title":"Ecological interaction networks: prospects and pitfalls","volume":"11","author":"W Ulrich","year":"2009","journal-title":"Ecological Questions"},{"issue":"23","key":"ref13","doi-asserted-by":"crossref","first-page":"8577","DOI":"10.1073\/pnas.0601602103","article-title":"Modularity and community structure in networks","volume":"103","author":"ME Newman","year":"2006","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"1391","DOI":"10.1038\/ncomms2422","article-title":"The ghost of nestedness in ecological networks","volume":"4","author":"PP Staniczenko","year":"2013","journal-title":"Nature communications"},{"issue":"7406","key":"ref15","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1038\/nature11214","article-title":"Disentangling nestedness from models of ecological complexity","volume":"487","author":"A James","year":"2012","journal-title":"Nature"},{"issue":"7463","key":"ref16","doi-asserted-by":"crossref","first-page":"E1","DOI":"10.1038\/nature12380","article-title":"\u201cDisentangling nestedness\u201d disentangled","volume":"500","author":"S Saavedra","year":"2013","journal-title":"Nature"},{"key":"ref17","article-title":"Using multi-species occupancy models to improve the characterization and understanding of metacommunity structure","author":"JR Mihaljevic","year":"2015","journal-title":"Ecology"},{"issue":"1","key":"ref18","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1111\/j.1365-2656.2011.01883.x","article-title":"Evaluating sampling completeness in a desert plant\u2013pollinator network","volume":"81","author":"NP Chacoff","year":"2012","journal-title":"Journal of Animal Ecology"},{"key":"ref19","article-title":"Predicting Novel Tick Vectors of Zoonotic Disease","author":"BA Han","year":"2016","journal-title":"arXiv preprint"},{"key":"ref20","article-title":"Forecasting potential emergence of zoonotic diseases in South-East Asia: network analysis identifies key rodent hosts","author":"F Bordes","year":"2016","journal-title":"Journal of Applied Ecology"},{"issue":"81","key":"ref21","doi-asserted-by":"crossref","first-page":"20120904","DOI":"10.1098\/rsif.2012.0904","article-title":"Using network theory to identify the causes of disease outbreaks of unknown origin","volume":"10","author":"TL Bogich","year":"2013","journal-title":"Journal of the Royal Society Interface"},{"issue":"4","key":"ref22","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.pt.2012.02.001","article-title":"FishPEST: an innovative software suite for fish parasitologists","volume":"28","author":"G Strona","year":"2012","journal-title":"Trends in parasitology"},{"issue":"2","key":"ref23","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1017\/S0031182016001608","article-title":"Predictability of helminth parasite host range using information on geography, host traits and parasite community structure","volume":"144","author":"T Dallas","year":"2017","journal-title":"Parasitology"},{"key":"ref24","doi-asserted-by":"crossref","unstructured":"Kunegis J, De Luca EW, Albayrak S. The link prediction problem in bipartite networks. In: International Conference on Information Processing and Management of Uncertainty in Knowledge-based Systems. Springer; 2010. p. 380\u2013389.","DOI":"10.1007\/978-3-642-14049-5_39"},{"issue":"2","key":"ref25","doi-asserted-by":"crossref","first-page":"880","DOI":"10.1016\/j.dss.2012.09.019","article-title":"Recommendation as link prediction in bipartite graphs: A graph kernel-based machine learning approach","volume":"54","author":"X Li","year":"2013","journal-title":"Decision Support Systems"},{"issue":"6","key":"ref26","doi-asserted-by":"crossref","first-page":"1150","DOI":"10.1016\/j.physa.2010.11.027","article-title":"Link prediction in complex networks: A survey","volume":"390","author":"L L\u00fc","year":"2011","journal-title":"Physica A: Statistical Mechanics and its Applications"},{"issue":"8","key":"ref27","doi-asserted-by":"crossref","first-page":"720","DOI":"10.1038\/nbt.2601","article-title":"Network link prediction by global silencing of indirect correlations","volume":"31","author":"B Barzel","year":"2013","journal-title":"Nature biotechnology"},{"issue":"7","key":"ref28","doi-asserted-by":"crossref","first-page":"1019","DOI":"10.1002\/asi.20591","article-title":"The link-prediction problem for social networks","volume":"58","author":"D Liben-Nowell","year":"2007","journal-title":"Journal of the American society for information science and technology"},{"key":"ref29","article-title":"Matching-centrality decomposition and the forecasting of new links in networks","author":"RP Rohr","year":"2013","journal-title":"arXiv preprint"},{"key":"ref30","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9781139035613","article-title":"Density ratio estimation in machine learning","author":"M Sugiyama","year":"2012"},{"issue":"5","key":"ref31","doi-asserted-by":"crossref","DOI":"10.18637\/jss.v027.i05","article-title":"Nonparametric Econometrics: The np Package","volume":"27","author":"T Hayfield","year":"2008","journal-title":"Journal of Statistical Software"},{"key":"ref32","article-title":"Estimating environmental suitability","author":"J Drake","year":"2017","journal-title":"bioRxiv"},{"issue":"4","key":"ref33","doi-asserted-by":"crossref","first-page":"e61623","DOI":"10.1371\/journal.pone.0061623","article-title":"Boosted beta regression","volume":"8","author":"M Schmid","year":"2013","journal-title":"PloS one"},{"issue":"7","key":"ref34","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1094\/Phyto-83-759","article-title":"Using the Beta-Binomial distribution to describe aggegated patterns of disease incidence","volume":"83","author":"G Hughes","year":"1993","journal-title":"Phytopathology"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"e1114","DOI":"10.7717\/peerj.1114","article-title":"A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology &amp; evolution","volume":"3","author":"XA Harrison","year":"2015","journal-title":"PeerJ"},{"issue":"1","key":"ref36","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1111\/j.2007.0906-7590.05231.x","article-title":"Connectance and parasite diet breadth in flea-mammal webs","volume":"31","author":"D Mouillot","year":"2008","journal-title":"Ecography"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"333","DOI":"10.2307\/3284470","article-title":"A guideline for the preparation of species descriptions in the Eimeriidae","author":"DW Duszynski","year":"1997","journal-title":"The Journal of Parasitology"},{"issue":"9","key":"ref38","doi-asserted-by":"crossref","first-page":"2648","DOI":"10.1890\/08-1494.1","article-title":"PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals: Ecological Archives E090-184","volume":"90","author":"KE Jones","year":"2009","journal-title":"Ecology"},{"issue":"7135","key":"ref39","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1038\/nature05634","article-title":"The delayed rise of present-day mammals","volume":"446","author":"OR Bininda-Emonds","year":"2007","journal-title":"Nature"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1093\/bioinformatics\/btg412","article-title":"APE: analyses of phylogenetics and evolution in R language","volume":"20","author":"E Paradis","year":"2004","journal-title":"Bioinformatics"},{"issue":"3","key":"ref41","first-page":"18","article-title":"Classification and Regression by randomForest","volume":"2","author":"A Liaw","year":"2002","journal-title":"R News"},{"issue":"417","key":"ref42","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1080\/01621459.1992.10475194","article-title":"Estimating the number of classes via sample coverage","volume":"87","author":"A Chao","year":"1992","journal-title":"Journal of the American statistical Association"},{"key":"ref43","first-page":"39","article-title":"Estimating species richness","volume":"12","author":"NJ Gotelli","year":"2011","journal-title":"Biological diversity: frontiers in measurement and assessment"},{"issue":"4","key":"ref44","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1046\/j.1461-0248.2001.00230.x","article-title":"Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness","volume":"4","author":"NJ Gotelli","year":"2001","journal-title":"Ecology letters"},{"issue":"5","key":"ref45","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1111\/geb.12144","article-title":"Performance of species richness estimators across assemblage types and survey parameters","volume":"23","author":"GC Reese","year":"2014","journal-title":"Global Ecology and Biogeography"},{"key":"ref46","article-title":"Interspecific interactions","author":"C Combes","year":"2001"},{"issue":"11","key":"ref47","doi-asserted-by":"crossref","first-page":"2403","DOI":"10.1890\/12-1471.1","article-title":"The checkered history of checkerboard distributions","volume":"94","author":"EF Connor","year":"2013","journal-title":"Ecology"},{"issue":"8","key":"ref48","doi-asserted-by":"crossref","first-page":"1227","DOI":"10.1111\/j.0030-1299.2008.16644.x","article-title":"A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement","volume":"117","author":"M Almeida-Neto","year":"2008","journal-title":"Oikos"},{"issue":"2","key":"ref49","doi-asserted-by":"crossref","first-page":"532","DOI":"10.1890\/0012-9658(2003)084[0532:SAINMA]2.0.CO;2","article-title":"Swap algorithms in null model analysis","volume":"84","author":"NJ Gotelli","year":"2003","journal-title":"Ecology"},{"issue":"3","key":"ref50","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1007\/BF00317632","article-title":"Competitive exclusion, or species aggregation?","volume":"91","author":"L Stone","year":"1992","journal-title":"Oecologia"},{"issue":"02","key":"ref51","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1017\/S0031182000071420","article-title":"A quantitative approach to parasitism","volume":"62","author":"H Crofton","year":"1971","journal-title":"Parasitology"},{"issue":"11","key":"ref52","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1139\/z11-084","article-title":"Effects of parasites on host energy expenditure: the resting metabolic rate stalemate","volume":"89","author":"N Robar","year":"2011","journal-title":"Canadian Journal of Zoology"},{"issue":"10","key":"ref53","doi-asserted-by":"crossref","first-page":"2516","DOI":"10.1890\/07-0060.1","article-title":"Immune defense and reproductive pace of life in Peromyscus mice","volume":"88","author":"LB Martin","year":"2007","journal-title":"Ecology"},{"issue":"9","key":"ref54","doi-asserted-by":"crossref","first-page":"1483","DOI":"10.1111\/j.1600-0706.2012.020215.x","article-title":"Relationship between pace of life and immune responses in wild rodents","volume":"121","author":"MA Previtali","year":"2012","journal-title":"Oikos"},{"issue":"3","key":"ref55","doi-asserted-by":"crossref","first-page":"1018","DOI":"10.1890\/0012-9658(1998)079[1018:ESRTIO]2.0.CO;2","article-title":"Estimating species richness: the importance of heterogeneity in species detectability","volume":"79","author":"T Boulinier","year":"1998","journal-title":"Ecology"},{"key":"ref56","article-title":"Species traits and abundances predict metrics of plant\u2013pollinator network structure, but not pairwise interactions","author":"C Olito","year":"2014","journal-title":"Oikos"},{"key":"ref57","first-page":"1","article-title":"Nonparametric Network Models for Link Prediction","volume":"17","author":"S Williamson","year":"2016","journal-title":"Journal of Machine Learning Research"}],"updated-by":[{"DOI":"10.1371\/journal.pcbi.1005557","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2017,6,9]],"date-time":"2017-06-09T00:00:00Z","timestamp":1496966400000}}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1005557","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,24]],"date-time":"2024-06-24T10:26:39Z","timestamp":1719224799000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1005557"}},"subtitle":[],"editor":[{"given":"Jacob","family":"Koella","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2017,5,25]]},"references-count":57,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2017,5,25]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1005557","relation":{"new_version":[{"id-type":"doi","id":"10.1371\/journal.pcbi.1005557","asserted-by":"object"}]},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,5,25]]}}}