{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,10]],"date-time":"2026-04-10T05:28:48Z","timestamp":1775798928691,"version":"3.50.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1007781","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2020,4,15]],"date-time":"2020-04-15T00:00:00Z","timestamp":1586908800000}}],"reference-count":9,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2020,4,3]],"date-time":"2020-04-03T00:00:00Z","timestamp":1585872000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003289","name":"Ministry of Aliyah and Immigrant Absorption","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100003289","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003977","name":"Israel Science Foundation","doi-asserted-by":"publisher","award":["1339\/18"],"award-info":[{"award-number":["1339\/18"]}],"id":[{"id":"10.13039\/501100003977","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003977","name":"Israel Science Foundation","doi-asserted-by":"publisher","award":["1947\/19"],"award-info":[{"award-number":["1947\/19"]}],"id":[{"id":"10.13039\/501100003977","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001742","name":"United States-Israel Binational Science Foundation","doi-asserted-by":"publisher","award":["2016694"],"award-info":[{"award-number":["2016694"]}],"id":[{"id":"10.13039\/501100001742","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010663","name":"H2020 European Research Council","doi-asserted-by":"publisher","award":["640384"],"award-info":[{"award-number":["640384"]}],"id":[{"id":"10.13039\/100010663","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1007781","type":"journal-article","created":{"date-parts":[[2020,4,3]],"date-time":"2020-04-03T13:33:35Z","timestamp":1585920815000},"page":"e1007781","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":123,"title":["PlasClass improves plasmid sequence classification"],"prefix":"10.1371","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6296-5209","authenticated-orcid":true,"given":"David","family":"Pellow","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6636-8818","authenticated-orcid":true,"given":"Itzik","family":"Mizrahi","sequence":"additional","affiliation":[]},{"given":"Ron","family":"Shamir","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2020,4,3]]},"reference":[{"issue":"6","key":"pcbi.1007781.ref001","doi-asserted-by":"crossref","first-page":"e35","DOI":"10.1093\/nar\/gkx1321","article-title":"PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures","volume":"46","author":"PS Krawczyk","year":"2018","journal-title":"Nucleic Acids Research"},{"issue":"16","key":"pcbi.1007781.ref002","doi-asserted-by":"crossref","first-page":"2051","DOI":"10.1093\/bioinformatics\/btq299","article-title":"cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data","volume":"26","author":"F Zhou","year":"2010","journal-title":"Bioinformatics"},{"issue":"D1","key":"pcbi.1007781.ref003","doi-asserted-by":"crossref","first-page":"D195","DOI":"10.1093\/nar\/gky1050","article-title":"PLSDB: a resource of complete bacterial plasmids","volume":"47","author":"V Galata","year":"2018","journal-title":"Nucleic Acids Research"},{"key":"pcbi.1007781.ref004","first-page":"2825","article-title":"Scikit-learn: Machine Learning in Python","volume":"12","author":"F Pedregosa","year":"2011","journal-title":"Journal of Machine Learning Research"},{"issue":"5","key":"pcbi.1007781.ref005","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"A Bankevich","year":"2012","journal-title":"Journal of Computational Biology"},{"issue":"10","key":"pcbi.1007781.ref006","doi-asserted-by":"crossref","first-page":"e000128","DOI":"10.1099\/mgen.0.000128","article-title":"On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data","volume":"3","author":"S Arredondo-Alonso","year":"2017","journal-title":"Microbial genomics"},{"issue":"3","key":"pcbi.1007781.ref007","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1093\/bioinformatics\/bty630","article-title":"Simulating Illumina metagenomic data with InSilicoSeq","volume":"35","author":"H Gourl\u00e9","year":"2018","journal-title":"Bioinformatics"},{"issue":"4","key":"pcbi.1007781.ref008","doi-asserted-by":"crossref","first-page":"1847","DOI":"10.1007\/s00253-018-8738-6","article-title":"Characteristics of ARG-carrying plasmidome in the cultivable microbial community from wastewater treatment system under high oxytetracycline concentration","volume":"102","author":"Y Shi","year":"2018","journal-title":"Applied microbiology and biotechnology"},{"issue":"4","key":"pcbi.1007781.ref009","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1093\/bioinformatics\/btw651","article-title":"Recycler: an algorithm for detecting plasmids from de novo assembly graphs","volume":"33","author":"R Rozov","year":"2017","journal-title":"Bioinformatics"}],"updated-by":[{"DOI":"10.1371\/journal.pcbi.1007781","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2020,4,15]],"date-time":"2020-04-15T00:00:00Z","timestamp":1586908800000}}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1007781","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,29]],"date-time":"2023-09-29T09:49:49Z","timestamp":1695980989000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1007781"}},"subtitle":[],"editor":[{"given":"Mihaela","family":"Pertea","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2020,4,3]]},"references-count":9,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2020,4,3]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1007781","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/783571","asserted-by":"object"}]},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,4,3]]}}}