{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,10]],"date-time":"2026-01-10T01:43:53Z","timestamp":1768009433684,"version":"3.49.0"},"reference-count":25,"publisher":"Public Library of Science (PLoS)","issue":"1","license":[{"start":{"date-parts":[[2022,1,6]],"date-time":"2022-01-06T00:00:00Z","timestamp":1641427200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"national institutes of health","doi-asserted-by":"publisher","award":["NIH-NIBIB P41 EB019936"],"award-info":[{"award-number":["NIH-NIBIB P41 EB019936"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"national institutes of health","doi-asserted-by":"publisher","award":["NIH-NIMH R01 MH083320"],"award-info":[{"award-number":["NIH-NIMH R01 MH083320"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"national institutes of health","doi-asserted-by":"publisher","award":["NIH RF1 MH120021"],"award-info":[{"award-number":["NIH RF1 MH120021"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000025","name":"national institute of mental health","doi-asserted-by":"publisher","award":["R01MH096906"],"award-info":[{"award-number":["R01MH096906"]}],"id":[{"id":"10.13039\/100000025","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010785","name":"canada first research excellence fund","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010785","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1009651","type":"journal-article","created":{"date-parts":[[2022,1,6]],"date-time":"2022-01-06T18:23:32Z","timestamp":1641493412000},"page":"e1009651","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":24,"title":["Beyond advertising: New infrastructures for publishing integrated research objects"],"prefix":"10.1371","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1358-196X","authenticated-orcid":true,"given":"Elizabeth","family":"DuPre","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2391-0678","authenticated-orcid":true,"given":"Chris","family":"Holdgraf","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7283-271X","authenticated-orcid":true,"given":"Agah","family":"Karakuzu","sequence":"additional","affiliation":[]},{"given":"Lo\u00efc","family":"Tetrel","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9111-0699","authenticated-orcid":true,"given":"Pierre","family":"Bellec","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8480-5230","authenticated-orcid":true,"given":"Nikola","family":"Stikov","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9794-749X","authenticated-orcid":true,"given":"Jean-Baptiste","family":"Poline","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2022,1,6]]},"reference":[{"issue":"3","key":"pcbi.1009651.ref001","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1093\/biostatistics\/kxq028","article-title":"An invitation to reproducible computational research","volume":"11","author":"DL Donoho","year":"2010","journal-title":"Biostatistics"},{"key":"pcbi.1009651.ref002","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1145\/2960811.2967170","volume-title":"Proceedings of the 2016 ACM Symposium on Document Engineering DocEng \u201816","author":"M. Piotrowski","year":"2016"},{"key":"pcbi.1009651.ref003","doi-asserted-by":"crossref","first-page":"3","DOI":"10.3389\/fninf.2019.00003","article-title":"From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research.","volume":"13","author":"A Keshavan","year":"2019","journal-title":"Front Neuroinform"},{"issue":"1","key":"pcbi.1009651.ref004","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1002\/asi.22798","article-title":"Peer review in a changing world: An international study measuring the attitudes of researchers.","volume":"64","author":"A Mulligan","year":"2013","journal-title":"J Am Soc Inf Sci Technol"},{"key":"pcbi.1009651.ref005","doi-asserted-by":"crossref","first-page":"72","DOI":"10.3389\/fncom.2012.00072","article-title":"Designing next-generation platforms for evaluating scientific output: what scientists can learn from the social web","volume":"6","author":"T. Yarkoni","year":"2012","journal-title":"Front Comput Neurosci"},{"issue":"4","key":"pcbi.1009651.ref006","doi-asserted-by":"crossref","first-page":"e0229446","DOI":"10.1371\/journal.pone.0229446","article-title":"Using social media to promote academic research: Identifying the benefits of twitter for sharing academic work","volume":"15","author":"S Klar","year":"2020","journal-title":"PLoS ONE"},{"issue":"2","key":"pcbi.1009651.ref007","doi-asserted-by":"crossref","first-page":"e3000116","DOI":"10.1371\/journal.pbio.3000116","article-title":"A proposal for the future of scientific publishing in the life sciences","volume":"17","author":"BM Stern","year":"2019","journal-title":"PLoS Biol"},{"issue":"9","key":"pcbi.1009651.ref008","first-page":"10","article-title":"Schema.org: Evolution of Structured Data on the Web: Big data makes common schemas even more necessary","volume":"13","author":"RV Guha","year":"2015","journal-title":"Queueing Syst."},{"issue":"6","key":"pcbi.1009651.ref009","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1038\/nn.4550","article-title":"Toward standard practices for sharing computer code and programs in neuroscience","volume":"20","author":"SJ Eglen","year":"2017","journal-title":"Nat Neurosci"},{"issue":"4","key":"pcbi.1009651.ref010","doi-asserted-by":"crossref","first-page":"e0230416","DOI":"10.1371\/journal.pone.0230416","article-title":"The citation advantage of linking publications to research data","volume":"15","author":"G Colavizza","year":"2020","journal-title":"PLoS ONE"},{"key":"pcbi.1009651.ref011","first-page":"2","article-title":"From data sharing to data publishing","author":"JB Poline","year":"2019","journal-title":"MNI Open Res"},{"key":"pcbi.1009651.ref012","article-title":"What Constitutes Peer Review of Data: A survey of published peer review guidelines.","author":"TA Carpenter","year":"2017","journal-title":"arXiv:1704.02236 [Preprint]."},{"key":"pcbi.1009651.ref013","doi-asserted-by":"crossref","first-page":"160044","DOI":"10.1038\/sdata.2016.44","article-title":"The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments","volume":"3","author":"KJ Gorgolewski","year":"2016","journal-title":"Scientific Data"},{"key":"pcbi.1009651.ref014","article-title":"The Turing Way: A handbook for reproducible, ethical and collaborative research","author":"The Turing Way Community","year":"2021"},{"issue":"7857","key":"pcbi.1009651.ref015","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1038\/d41586-021-01174-w","article-title":"Reactive, reproducible, collaborative: computational notebooks evolve","volume":"593","author":"JM Perkel","year":"2021","journal-title":"Nature"},{"key":"pcbi.1009651.ref016","author":"RC Davis","year":"2011","journal-title":"Five Tips for Designing Preservable Websites"},{"key":"pcbi.1009651.ref017","first-page":"87","volume-title":"Positioning and Power in Academic Publishing: Players, Agents and Agendas","author":"T Kluyver","year":"2016"},{"key":"pcbi.1009651.ref018","unstructured":"RStudio. rticles. 2021. Available from: https:\/\/github.com\/rstudio\/rticles."},{"key":"pcbi.1009651.ref019","doi-asserted-by":"crossref","first-page":"113","DOI":"10.25080\/Majora-4af1f417-011","article-title":"Binder 2.0\u2014Reproducible, interactive, sharable environments for science at scale","author":"Project Jupyter","year":"2018","journal-title":"Proceedings of the 17th Python in Science Conference"},{"issue":"6","key":"pcbi.1009651.ref020","doi-asserted-by":"crossref","first-page":"1213","DOI":"10.1016\/j.neuron.2017.12.013","article-title":"An International Laboratory for Systems and Computational Neuroscience","volume":"96","author":"International Brain Laboratory","year":"2017","journal-title":"Neuron"},{"key":"pcbi.1009651.ref021","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1007\/978-3-030-44728-1_12","volume-title":"Tools and Techniques for High Performance Computing","author":"TE Odaka","year":"2020"},{"key":"pcbi.1009651.ref022","author":"A Rokem","year":"2021","journal-title":"Pan-neuro: interactive computing at scale with BRAIN datasets"},{"issue":"1","key":"pcbi.1009651.ref023","first-page":"17","article-title":"In defense of decentralized research data management","volume":"27","author":"M Hanke","year":"2021","journal-title":"Neuroforum"},{"key":"pcbi.1009651.ref024","article-title":"Publish your software: introducing the journal of open source software (JOSS).","author":"DS Katz","year":"2018","journal-title":"Comput Sci Eng"},{"issue":"2","key":"pcbi.1009651.ref025","doi-asserted-by":"crossref","first-page":"e1008725","DOI":"10.1371\/journal.pcbi.1008725","article-title":"On the open-source landscape of PLOS Computational Biology","volume":"17","author":"M Boudreau","year":"2021","journal-title":"PLoS Comput Biol"}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1009651","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,6]],"date-time":"2022-01-06T18:23:51Z","timestamp":1641493431000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1009651"}},"subtitle":[],"editor":[{"given":"Feilim","family":"Mac Gabhann","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2022,1,6]]},"references-count":25,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2022,1,6]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1009651","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,1,6]]}}}