{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,3]],"date-time":"2026-03-03T12:33:13Z","timestamp":1772541193685,"version":"3.50.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1010081","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2022,6,24]],"date-time":"2022-06-24T00:00:00Z","timestamp":1656028800000}}],"reference-count":93,"publisher":"Public Library of Science (PLoS)","issue":"5","license":[{"start":{"date-parts":[[2022,5,19]],"date-time":"2022-05-19T00:00:00Z","timestamp":1652918400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001807","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","doi-asserted-by":"publisher","award":["2015\/12093-9"],"award-info":[{"award-number":["2015\/12093-9"]}],"id":[{"id":"10.13039\/501100001807","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001807","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","doi-asserted-by":"publisher","award":["2017\/08463-0"],"award-info":[{"award-number":["2017\/08463-0"]}],"id":[{"id":"10.13039\/501100001807","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","doi-asserted-by":"publisher","award":["401041\/2016-6"],"award-info":[{"award-number":["401041\/2016-6"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001807","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","doi-asserted-by":"publisher","award":["2015\/19211-7"],"award-info":[{"award-number":["2015\/19211-7"]}],"id":[{"id":"10.13039\/501100001807","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>\n                    Ethanol alters many subsystems of\n                    <jats:italic>Saccharomyces cerevisiae<\/jats:italic>\n                    , including the cell cycle. Two ethanol-responsive lncRNAs in yeast interact with cell cycle proteins, and here, we investigated the role of these RNAs in cell cycle. Our network dynamic modeling showed that higher and lower ethanol-tolerant strains undergo cell cycle arrest in mitosis and G1 phases, respectively, during ethanol stress. The higher population rebound of the lower ethanol-tolerant phenotype after stress relief responds to the late phase arrest. We found that the lncRNA lnc9136 of SEY6210 (a lower ethanol-tolerant strain) induces cells to skip mitosis arrest. Simulating an overexpression of lnc9136 and analyzing CRISPR\u2013Cas9 mutants lacking this lncRNA suggest that lnc9136 induces a regular cell cycle even under ethanol stress, indirectly regulating Swe1p and Clb1\/2 by binding to Gin4p and Hsl1p. Notably, lnc10883 of BY4742 (a higher ethanol-tolerant strain) does not prevent G1 arrest in this strain under ethanol stress. However, lnc19883 circumvents DNA and spindle damage checkpoints, maintaining a functional cell cycle by interacting with Mec1p or Bub1p even in the presence of DNA\/spindle damage. Overall, we present the first evidence of direct roles for lncRNAs in regulating yeast cell cycle proteins, the dynamics of this system in different ethanol-tolerant phenotypes, and a new yeast cell cycle model.\n                  <\/jats:p>","DOI":"10.1371\/journal.pcbi.1010081","type":"journal-article","created":{"date-parts":[[2022,5,19]],"date-time":"2022-05-19T14:03:49Z","timestamp":1652969029000},"page":"e1010081","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":9,"title":["LncRNAs of Saccharomyces cerevisiae bypass the cell cycle arrest imposed by ethanol stress"],"prefix":"10.1371","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2779-4926","authenticated-orcid":true,"given":"Lucas Cardoso","family":"L\u00e1zari","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9042-1823","authenticated-orcid":true,"given":"Ivan Rodrigo","family":"Wolf","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5731-9085","authenticated-orcid":true,"given":"Amanda Piveta","family":"Schnepper","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5355-3424","authenticated-orcid":true,"given":"Guilherme Targino","family":"Valente","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2022,5,19]]},"reference":[{"key":"pcbi.1010081.ref001","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.bbrep.2017.03.003","article-title":"Yeasts in sustainable bioethanol production: A review","volume":"10","author":"SH Mohd Azhar","year":"2017","journal-title":"Biochem Biophys Reports"},{"key":"pcbi.1010081.ref002","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1016\/j.rser.2014.08.032","article-title":"Sustainable bio-ethanol production from agro-residues: A review","volume":"41","author":"A Gupta","year":"2015","journal-title":"Renew Sustain Energy Rev"},{"key":"pcbi.1010081.ref003","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.jbiosc.2017.03.009","article-title":"Molecular mechanisms of the yeast adaptive response and tolerance to stresses encountered during ethanol fermentation","volume":"124","author":"C. 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