{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,18]],"date-time":"2026-06-18T10:44:28Z","timestamp":1781779468479,"version":"3.54.5"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1011000","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2023,4,25]],"date-time":"2023-04-25T00:00:00Z","timestamp":1682380800000}}],"reference-count":64,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2023,4,13]],"date-time":"2023-04-13T00:00:00Z","timestamp":1681344000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001713","name":"European and Developing Countries Clinical Trials Partnership","doi-asserted-by":"publisher","award":["IP.2007.32011.011, IP.2007.32011.012, and IP.2007.32011.013"],"award-info":[{"award-number":["IP.2007.32011.011, IP.2007.32011.012, and IP.2007.32011.013"]}],"id":[{"id":"10.13039\/501100001713","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001713","name":"European and Developing Countries Clinical Trials Partnership","doi-asserted-by":"publisher","award":["TRIA2015-1102-PanACEA"],"award-info":[{"award-number":["TRIA2015-1102-PanACEA"]}],"id":[{"id":"10.13039\/501100001713","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005416","name":"Norges Forskningsr\u00e5d","doi-asserted-by":"publisher","award":["262686"],"award-info":[{"award-number":["262686"]}],"id":[{"id":"10.13039\/501100005416","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:sec id=\"sec001\">\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>\n                      Antibiotic treatments are often associated with a late slowdown in bacterial killing. This separates the killing of bacteria into at least two distinct phases: a quick phase followed by a slower phase, the latter of which is linked to treatment success. Current mechanistic explanations for the\n                      <jats:italic>in vitro<\/jats:italic>\n                      slowdown are either antibiotic persistence or heteroresistance. Persistence is defined as the switching back and forth between susceptible and non-susceptible states, while heteroresistance is defined as the coexistence of bacteria with heterogeneous susceptibilities. Both are also thought to cause a slowdown in the decline of bacterial populations in patients and therefore complicate and prolong antibiotic treatments. Reduced bacterial death rates over time are also observed within tuberculosis patients, yet the mechanistic reasons for this are unknown and therefore the strategies to mitigate them are also unknown.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec id=\"sec002\">\n                    <jats:title>Methods and findings<\/jats:title>\n                    <jats:p>\n                      We analyse a dose ranging trial for rifampicin in tuberculosis patients and show that there is a slowdown in the decline of bacteria. We show that the late phase of bacterial killing depends more on the peak drug concentrations than the total drug exposure. We compare these to pharmacokinetic-pharmacodynamic models of rifampicin heteroresistance and persistence. We find that the observation on the slow phase\u2019s dependence on pharmacokinetic measures, specifically peak concentrations are only compatible with models of heteroresistance and incompatible with models of persistence. The quantitative agreement between heteroresistance models and observations is very good (\n                      <jats:inline-formula id=\"pcbi.1011000.e001\">\n                        <jats:alternatives>\n                          <jats:graphic xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" id=\"pcbi.1011000.e001g\" mimetype=\"image\" position=\"anchor\" xlink:href=\"info:doi\/10.1371\/journal.pcbi.1011000.e001\" xlink:type=\"simple\"\/>\n                          <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\" display=\"inline\" id=\"M1\">\n                            <mml:msubsup>\n                              <mml:mrow>\n                                <mml:mi>R<\/mml:mi>\n                              <\/mml:mrow>\n                              <mml:mrow>\n                                <mml:mi>a<\/mml:mi>\n                                <mml:mi>d<\/mml:mi>\n                                <mml:mi>j<\/mml:mi>\n                              <\/mml:mrow>\n                              <mml:mrow>\n                                <mml:mn>2<\/mml:mn>\n                              <\/mml:mrow>\n                            <\/mml:msubsup>\n                            <mml:mo>=<\/mml:mo>\n                            <mml:mn>0.97<\/mml:mn>\n                          <\/mml:math>\n                        <\/jats:alternatives>\n                      <\/jats:inline-formula>\n                      ).\n                    <\/jats:p>\n                    <jats:p>To corroborate the importance of the slowdown, we validate our results by estimating the time to sputum culture conversion and compare the results to a different dose ranging trial.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec id=\"sec003\">\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>Our findings indicate that higher doses, specifically higher peak concentrations may be used to optimize rifampicin treatments by accelerating bacterial killing in the slow phase. It adds to the growing body of literature supporting higher rifampicin doses for shortening tuberculosis treatments.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1371\/journal.pcbi.1011000","type":"journal-article","created":{"date-parts":[[2023,4,13]],"date-time":"2023-04-13T14:31:45Z","timestamp":1681396305000},"page":"e1011000","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":3,"title":["High rifampicin peak plasma concentrations accelerate the slow phase of bacterial decline in tuberculosis patients: Evidence for heteroresistance"],"prefix":"10.1371","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6539-6358","authenticated-orcid":true,"given":"Antal","family":"Martinecz","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin J.","family":"Boeree","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreas H.","family":"Diacon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rodney","family":"Dawson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Colin","family":"Hemez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rob E.","family":"Aarnoutse","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9420-9005","authenticated-orcid":true,"given":"Pia","family":"Abel zur Wiesch","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2023,4,13]]},"reference":[{"key":"pcbi.1011000.ref001","doi-asserted-by":"crossref","first-page":"2149","DOI":"10.1056\/NEJMra1413919","article-title":"Treatment of Tuberculosis","volume":"373","author":"CR Horsburgh","year":"2015","journal-title":"N Engl J Med"},{"key":"pcbi.1011000.ref002","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/S0140-6736(10)62173-3","article-title":"Tuberculosis.","volume":"378","author":"SD Lawn","year":"2011","journal-title":"The Lancet"},{"key":"pcbi.1011000.ref003","doi-asserted-by":"crossref","first-page":"e1002842","DOI":"10.1371\/journal.pmed.1002842","article-title":"Advancing the development of new tuberculosis treatment regimens: The essential role of translational and clinical pharmacology and microbiology","volume":"16","author":"KE Dooley","year":"2019","journal-title":"PLOS 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Shamputa","year":"2006","journal-title":"Respir Res"},{"key":"pcbi.1011000.ref007","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00888-17","article-title":"Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance","volume":"61","author":"JZ Metcalfe","year":"2017","journal-title":"Antimicrob Agents Chemother"},{"key":"pcbi.1011000.ref008","doi-asserted-by":"crossref","first-page":"477","DOI":"10.3389\/fgene.2019.00477","article-title":"Effects of Host, Sample, and in vitro Culture on Genomic Diversity of Pathogenic Mycobacteria.","volume":"10","author":"AC Shockey","year":"2019","journal-title":"Front Genet"},{"key":"pcbi.1011000.ref009","doi-asserted-by":"crossref","first-page":"e1007726","DOI":"10.1371\/journal.ppat.1007726","article-title":"Heteroresistance: A cause of unexplained antibiotic treatment failure?","volume":"15","author":"VI Band","year":"2019","journal-title":"PLOS 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