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Correct formation of embryonic cartilage is hence essential for healthy development. In vertebrate cranial cartilage, it has been observed that a flat and laterally extended macroscopic geometry is linked to regular microscopic structure consisting of tightly packed, short, transversal clonar columns. However, it remains an ongoing challenge to identify how individual cells coordinate to successfully shape the tissue, and more precisely which mechanical interactions and cell behaviors contribute to the generation and maintenance of this columnar cartilage geometry during embryogenesis. Here, we apply a three-dimensional cell-based computational model to investigate mechanical principles contributing to column formation. The model accounts for clonal expansion, anisotropic proliferation and the geometrical arrangement of progenitor cells in space. We confirm that oriented cell divisions and repulsive mechanical interactions between cells are key drivers of column formation. In addition, the model suggests that column formation benefits from the spatial gaps created by the extracellular matrix in the initial configuration, and that column maintenance is facilitated by sequential proliferative phases. Our model thus correctly predicts the dependence of local order on division orientation and tissue thickness. The present study presents the first cell-based simulations of cell mechanics during cranial cartilage formation and we anticipate that it will be useful in future studies on the formation and growth of other cartilage geometries.<\/jats:p>","DOI":"10.1371\/journal.pcbi.1011658","type":"journal-article","created":{"date-parts":[[2023,11,29]],"date-time":"2023-11-29T13:43:31Z","timestamp":1701265411000},"page":"e1011658","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":0,"title":["Contributions of cell behavior to geometric order in embryonic 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Li","year":"2021","edition":"2"},{"issue":"1","key":"pcbi.1011658.ref030","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s13770-019-00216-9","article-title":"Applications of Computer Modeling and Simulation in Cartilage Tissue Engineering","volume":"17","author":"D Pearce","year":"2020","journal-title":"Tissue Eng Regen Med"},{"issue":"4","key":"pcbi.1011658.ref031","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1046\/j.0960-7722.2001.00216.x","article-title":"Cell migration and organization in the intestinal crypt using a lattice-free model","volume":"34","author":"FA Meineke","year":"2001","journal-title":"Cell Proliferation"},{"issue":"5","key":"pcbi.1011658.ref032","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1053\/joca.1999.0306","article-title":"Cellular interactions and signaling in cartilage development","volume":"8","author":"AM DeLise","year":"2000","journal-title":"Osteoarthritis and 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Sphere point picking;. 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