{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T08:28:12Z","timestamp":1772180892138,"version":"3.50.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1011941","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2024,3,26]],"date-time":"2024-03-26T00:00:00Z","timestamp":1711411200000}}],"reference-count":43,"publisher":"Public Library of Science (PLoS)","issue":"3","license":[{"start":{"date-parts":[[2024,3,14]],"date-time":"2024-03-14T00:00:00Z","timestamp":1710374400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["2013\/08\/W\/NZ4\/00691"],"award-info":[{"award-number":["2013\/08\/W\/NZ4\/00691"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"Narodowe Centrum Nauki","doi-asserted-by":"publisher","award":["2015\/17\/B\/ST7\/04123"],"award-info":[{"award-number":["2015\/17\/B\/ST7\/04123"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>\n                    Interpretation of extracellular recordings can be challenging due to the long range of electric field. This challenge can be mitigated by estimating the current source density (CSD). Here we introduce\n                    <jats:monospace specific-use=\"no-wrap\">kCSD-python<\/jats:monospace>\n                    , an open Python package implementing Kernel Current Source Density (kCSD) method and related tools to facilitate CSD analysis of experimental data and the interpretation of results. We show how to counter the limitations imposed by noise and assumptions in the method itself.\n                    <jats:monospace specific-use=\"no-wrap\">kCSD-python<\/jats:monospace>\n                    allows CSD estimation for an arbitrary distribution of electrodes in 1D, 2D, and 3D, assuming distributions of sources in tissue, a slice, or in a single cell, and includes a range of diagnostic aids. We demonstrate its features in a Jupyter Notebook tutorial which illustrates a typical analytical workflow and main functionalities useful in validating analysis results.\n                  <\/jats:p>","DOI":"10.1371\/journal.pcbi.1011941","type":"journal-article","created":{"date-parts":[[2024,3,14]],"date-time":"2024-03-14T13:51:26Z","timestamp":1710424286000},"page":"e1011941","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":5,"title":["kCSD-python, reliable current source density estimation with quality control"],"prefix":"10.1371","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4252-1608","authenticated-orcid":true,"given":"Chaitanya","family":"Chintaluri","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marta","family":"Bejtka","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"W\u0142adys\u0142aw","family":"\u015aredniawa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Micha\u0142","family":"Czerwi\u0144ski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3745-1000","authenticated-orcid":true,"given":"Jakub M.","family":"Dzik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2336-0848","authenticated-orcid":true,"given":"Joanna","family":"J\u0119drzejewska-Szmek","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0812-9872","authenticated-orcid":true,"given":"Daniel K.","family":"W\u00f3jcik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2024,3,14]]},"reference":[{"key":"pcbi.1011941.ref001","doi-asserted-by":"crossref","DOI":"10.1093\/acprof:oso\/9780195050387.001.0001","volume-title":"Electric Fields of the Brain","author":"PL Nunez","year":"2006","edition":"2"},{"issue":"6","key":"pcbi.1011941.ref002","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1038\/nrn3241","article-title":"The origin of extracellular fields and currents\u2014EEG, ECoG, LFP and spikes","volume":"13","author":"G Buzs\u00e1ki","year":"2012","journal-title":"Nat Rev Neurosci"},{"key":"pcbi.1011941.ref003","unstructured":"Pitts W. Investigations on synaptic transmission. In: Cybernetics, Trans. 9th Conf. Josiah Macy, New York; 1952. p. 159\u2013162."},{"issue":"2","key":"pcbi.1011941.ref004","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1152\/jn.1975.38.2.356","article-title":"Theory of current source-density analysis and determination of conductivity tensor for anuran cerebellum","volume":"38","author":"C Nicholson","year":"1975","journal-title":"J Neurophysiol"},{"key":"pcbi.1011941.ref005","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1152\/physrev.1985.65.1.37","article-title":"Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena","volume":"65","author":"U Mitzdorf","year":"1985","journal-title":"Physiological Reviews"},{"issue":"11","key":"pcbi.1011941.ref006","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1038\/nrn3599","article-title":"Modelling and analysis of local field potentials for studying the function of cortical circuits","volume":"14","author":"GT Einevoll","year":"2013","journal-title":"Nat Rev Neurosci"},{"key":"pcbi.1011941.ref007","doi-asserted-by":"crossref","unstructured":"W\u00f3jcik DK. 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