{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T03:24:47Z","timestamp":1773199487303,"version":"3.50.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1012050","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2025,4,23]],"date-time":"2025-04-23T00:00:00Z","timestamp":1745366400000}}],"reference-count":92,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2025,4,10]],"date-time":"2025-04-10T00:00:00Z","timestamp":1744243200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"University of Saint-Etienne","award":["N\/A"],"award-info":[{"award-number":["N\/A"]}]},{"DOI":"10.13039\/501100011918","name":"Labex CeLyA","doi-asserted-by":"crossref","award":["N\/A"],"award-info":[{"award-number":["N\/A"]}],"id":[{"id":"10.13039\/501100011918","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>Despite hosting some of the highest concentrations of biodiversity and providing invaluable goods and services in the oceans, coral reefs are under threat from global change and other local human impacts. Changes in living ecosystems often induce changes in their acoustic characteristics, but despite recent efforts in passive acoustic monitoring of coral reefs, rapid measurement and identification of changes in their soundscapes remains a challenge. Here we present the new open-source software <jats:italic>CoralSoundExplorer<\/jats:italic>, which is designed to study and monitor coral reef soundscapes. <jats:italic>CoralSoundExplorer<\/jats:italic> uses machine learning approaches and is designed to eliminate the need to extract conventional acoustic indices. To demonstrate <jats:italic>CoralSoundExplorer<\/jats:italic>\u2019s functionalities, we use and analyze a set of recordings from three coral reef sites, each with different purposes (undisturbed site, tourist site and boat site), located on the island of Bora-Bora in French Polynesia. We explain the <jats:italic>CoralSoundExplorer<\/jats:italic> analysis workflow, from raw sounds to ecological results, detailing and justifying each processing step. We detail the software settings, the graphical representations used for visual exploration of soundscapes and their temporal dynamics, along with the analysis methods and metrics proposed. We demonstrate that <jats:italic>CoralSoundExplorer<\/jats:italic> is a powerful tool for identifying disturbances affecting coral reef soundscapes, combining visualizations of the spatio-temporal distribution of sound recordings with new quantification methods to characterize soundscapes at different temporal scales.<\/jats:p>","DOI":"10.1371\/journal.pcbi.1012050","type":"journal-article","created":{"date-parts":[[2025,4,10]],"date-time":"2025-04-10T17:35:58Z","timestamp":1744306558000},"page":"e1012050","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":3,"title":["Visualization and quantification of coral reef soundscapes using CoralSoundExplorer software"],"prefix":"10.1371","volume":"21","author":[{"given":"Lana","family":"Minier","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-8457-7576","authenticated-orcid":true,"given":"J\u00e9r\u00e9my","family":"Rouch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-6607-9807","authenticated-orcid":true,"given":"Bamdad","family":"Sabbagh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2425-9362","authenticated-orcid":true,"given":"Fr\u00e9d\u00e9ric","family":"Bertucci","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric","family":"Parmentier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Lecchini","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fr\u00e9d\u00e9ric","family":"S\u00e8be","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicolas","family":"Mathevon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1870-1329","authenticated-orcid":true,"given":"R\u00e9mi","family":"Emonet","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2025,4,10]]},"reference":[{"issue":"7336","key":"pcbi.1012050.ref001","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1038\/nature09678","article-title":"Has the Earth\u2019s sixth mass extinction already arrived?","volume":"471","author":"AD Barnosky","year":"2011","journal-title":"Nature"},{"issue":"1\u20132","key":"pcbi.1012050.ref002","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.marpolbul.2013.02.040","article-title":"Status of Caribbean coral reefs in seven countries in 1986","volume":"70","author":"C Wilkinson","year":"2013","journal-title":"Mar Pollut Bull"},{"key":"pcbi.1012050.ref003","doi-asserted-by":"crossref","first-page":"101687","DOI":"10.1016\/j.rsma.2021.101687","article-title":"Assessment of ecological status of the lagoon of Bora-Bora Island (French Polynesia)","volume":"43","author":"D Lecchini","year":"2021","journal-title":"Regional Stud Marine Sci"},{"issue":"18","key":"pcbi.1012050.ref004","doi-asserted-by":"crossref","first-page":"9906","DOI":"10.1073\/pnas.1918373117","article-title":"Reconciling global priorities for conserving biodiversity habitat","volume":"117","author":"K Mokany","year":"2020","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"8","key":"pcbi.1012050.ref005","doi-asserted-by":"crossref","first-page":"201287","DOI":"10.1098\/rsos.201287","article-title":"Listening forward: approaching marine biodiversity assessments using acoustic methods","volume":"7","author":"TA Mooney","year":"2020","journal-title":"R Soc Open Sci"},{"issue":"7826","key":"pcbi.1012050.ref006","doi-asserted-by":"crossref","first-page":"551","DOI":"10.1038\/s41586-020-2705-y","article-title":"Bending the curve of terrestrial biodiversity needs an integrated strategy","volume":"585","author":"D Lecl\u00e8re","year":"2020","journal-title":"Nature"},{"issue":"2","key":"pcbi.1012050.ref007","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1111\/2041-210X.13101","article-title":"Emerging opportunities and challenges for passive acoustics in ecological assessment and monitoring","volume":"10","author":"R Gibb","year":"2018","journal-title":"Methods Ecol Evol"},{"key":"pcbi.1012050.ref008","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/978-94-007-7374-5_1","article-title":"Soundscape and landscape ecology.","volume-title":"Soundscape Ecology: Principles, Patterns, Methods and Applications","author":"A. 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