{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,8]],"date-time":"2026-04-08T07:18:17Z","timestamp":1775632697345,"version":"3.50.1"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1012370","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T00:00:00Z","timestamp":1726185600000}}],"reference-count":97,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2024,9,3]],"date-time":"2024-09-03T00:00:00Z","timestamp":1725321600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100019180","name":"HORIZON EUROPE European Research Council","doi-asserted-by":"publisher","award":["724822"],"award-info":[{"award-number":["724822"]}],"id":[{"id":"10.13039\/100019180","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["515774656"],"award-info":[{"award-number":["515774656"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["432680300"],"award-info":[{"award-number":["432680300"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["390729940"],"award-info":[{"award-number":["390729940"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004939","name":"G\u00f6ttinger Graduiertenschule f\u00fcr Neurowissenschaften, Biophysik und Molekulare Biowissenschaften","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004939","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>Spatially nonlinear stimulus integration by retinal ganglion cells lies at the heart of various computations performed by the retina. It arises from the nonlinear transmission of signals that ganglion cells receive from bipolar cells, which thereby constitute functional subunits within a ganglion cell\u2019s receptive field. Inferring these subunits from recorded ganglion cell activity promises a new avenue for studying the functional architecture of the retina. This calls for efficient methods, which leave sufficient experimental time to leverage the acquired knowledge for further investigating identified subunits. Here, we combine concepts from super-resolution microscopy and computed tomography and introduce super-resolved tomographic reconstruction (STR) as a technique to efficiently stimulate and locate receptive field subunits. Simulations demonstrate that this approach can reliably identify subunits across a wide range of model variations, and application in recordings of primate parasol ganglion cells validates the experimental feasibility. STR can potentially reveal comprehensive subunit layouts within only a few tens of minutes of recording time, making it ideal for online analysis and closed-loop investigations of receptive field substructure in retina recordings.<\/jats:p>","DOI":"10.1371\/journal.pcbi.1012370","type":"journal-article","created":{"date-parts":[[2024,9,3]],"date-time":"2024-09-03T13:42:18Z","timestamp":1725370938000},"page":"e1012370","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":5,"title":["Applying Super-Resolution and Tomography Concepts to Identify Receptive Field Subunits in the Retina"],"prefix":"10.1371","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2773-6785","authenticated-orcid":true,"given":"Steffen","family":"Kr\u00fcppel","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3123-7054","authenticated-orcid":true,"given":"Mohammad H.","family":"Khani","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Helene M.","family":"Schreyer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8837-8555","authenticated-orcid":true,"given":"Shashwat","family":"Sridhar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-1369-2600","authenticated-orcid":true,"given":"Varsha","family":"Ramakrishna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0836-1663","authenticated-orcid":true,"given":"S\u00f6ren J.","family":"Zapp","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthias","family":"Mietsch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9469-5020","authenticated-orcid":true,"given":"Dimokratis","family":"Karamanlis","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3998-533X","authenticated-orcid":true,"given":"Tim","family":"Gollisch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2024,9,3]]},"reference":[{"issue":"2","key":"pcbi.1012370.ref001","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1080\/713663221","article-title":"A simple white noise analysis of neuronal light responses","volume":"12","author":"EJ Chichilnisky","year":"2001","journal-title":"Netw Comput Neural Syst"},{"issue":"3","key":"pcbi.1012370.ref002","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1113\/jphysiol.1966.sp008107","article-title":"The contrast sensitivity of retinal ganglion cells of the cat","volume":"187","author":"C Enroth-Cugell","year":"1966","journal-title":"J Physiol"},{"issue":"2","key":"pcbi.1012370.ref003","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1113\/jphysiol.1976.sp011595","article-title":"Linear and nonlinear spatial subunits in Y cat retinal ganglion cells","volume":"262","author":"S Hochstein","year":"1976","journal-title":"J Physiol"},{"issue":"6","key":"pcbi.1012370.ref004","doi-asserted-by":"crossref","first-page":"1394","DOI":"10.1152\/jn.1978.41.6.1394","article-title":"Properties of Concentrically Organized X and Y Ganglion Cells of Macaque Retina","volume":"41","author":"FM de Monasterio","year":"1978","journal-title":"J Neurophysiol"},{"issue":"6","key":"pcbi.1012370.ref005","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1085\/jgp.74.6.671","article-title":"The Nonlinear Pathway of Y Ganglion Cells in the Cat Retina","volume":"74","author":"JD Victor","year":"1979","journal-title":"J Gen Physiol"},{"issue":"11","key":"pcbi.1012370.ref006","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1038\/nn.3225","article-title":"The spatial structure of a nonlinear receptive field","volume":"15","author":"GW Schwartz","year":"2012","journal-title":"Nat Neurosci"},{"issue":"6938","key":"pcbi.1012370.ref007","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1038\/nature01652","article-title":"Segregation of object and background motion in the retina","volume":"423","author":"BP \u00d6lveczky","year":"2003","journal-title":"Nature"},{"issue":"10","key":"pcbi.1012370.ref008","doi-asserted-by":"crossref","first-page":"1308","DOI":"10.1038\/nn.2389","article-title":"Approach sensitivity in the retina processed by a multifunctional neural circuit","volume":"12","author":"TA M\u00fcnch","year":"2009","journal-title":"Nat Neurosci"},{"issue":"3","key":"pcbi.1012370.ref009","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1085\/jgp.201110629","article-title":"Nonlinear spatial encoding by retinal ganglion cells: when 1 + 1 \u2260 2","volume":"138","author":"G Schwartz","year":"2011","journal-title":"J Gen Physiol"},{"issue":"36","key":"pcbi.1012370.ref010","doi-asserted-by":"crossref","first-page":"E2391","DOI":"10.1073\/pnas.1211547109","article-title":"The most numerous ganglion cell type of the mouse retina is a selective feature detector","volume":"109","author":"Y Zhang","year":"2012","journal-title":"Proc Natl Acad Sci U S A"},{"key":"pcbi.1012370.ref011","doi-asserted-by":"crossref","first-page":"e22431","DOI":"10.7554\/eLife.22431","article-title":"Sensitivity to image recurrence across eye-movement-like image transitions through local serial inhibition in the retina.","volume":"6","author":"V Krishnamoorthy","year":"2017","journal-title":"eLife"},{"issue":"6","key":"pcbi.1012370.ref012","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1016\/j.tins.2022.03.005","article-title":"Retinal receptive-field substructure: scaffolding for coding and computation","volume":"45","author":"SJ Zapp","year":"2022","journal-title":"Trends Neurosci"},{"issue":"29","key":"pcbi.1012370.ref013","doi-asserted-by":"crossref","first-page":"5319","DOI":"10.1523\/JNEUROSCI.1561-22.2023","article-title":"Diversity of Ganglion Cell Responses to Saccade-Like Image Shifts in the Primate Retina","volume":"43","author":"S Kr\u00fcppel","year":"2023","journal-title":"J Neurosci"},{"issue":"6","key":"pcbi.1012370.ref014","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1167\/11.6.11","article-title":"Dependence of the retinal Ganglion cell\u2019s responses on local textures of natural scenes.","volume":"11","author":"X Cao","year":"2011","journal-title":"J Vis."},{"issue":"6","key":"pcbi.1012370.ref015","doi-asserted-by":"crossref","first-page":"1257","DOI":"10.1016\/j.neuron.2016.05.006","article-title":"Synaptic Rectification Controls Nonlinear Spatial Integration of Natural Visual Inputs","volume":"90","author":"MH Turner","year":"2016","journal-title":"Neuron"},{"issue":"15","key":"pcbi.1012370.ref016","doi-asserted-by":"crossref","first-page":"3479","DOI":"10.1523\/JNEUROSCI.3075-20.2021","article-title":"Nonlinear Spatial Integration Underlies the Diversity of Retinal Ganglion Cell Responses to Natural Images","volume":"41","author":"D Karamanlis","year":"2021","journal-title":"J Neurosci"},{"issue":"19","key":"pcbi.1012370.ref017","doi-asserted-by":"crossref","first-page":"7447","DOI":"10.1523\/JNEUROSCI.21-19-07447.2001","article-title":"Bipolar Cells Contribute to Nonlinear Spatial Summation in the Brisk-Transient (Y) Ganglion Cell in Mammalian Retina.","volume":"21","author":"JB Demb","year":"2001","journal-title":"J Neurosci"},{"issue":"27","key":"pcbi.1012370.ref018","doi-asserted-by":"crossref","first-page":"10972","DOI":"10.1523\/JNEUROSCI.1241-13.2013","article-title":"Two-Photon Imaging of Nonlinear Glutamate Release Dynamics at Bipolar Cell Synapses in the Mouse Retina","volume":"33","author":"BG Borghuis","year":"2013","journal-title":"J Neurosci"},{"issue":"1","key":"pcbi.1012370.ref019","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1016\/0165-0270(94)90030-2","article-title":"Multi-neuronal signals from the retina: acquisition and analysis","volume":"51","author":"M Meister","year":"1994","journal-title":"J Neurosci Methods"},{"issue":"2","key":"pcbi.1012370.ref020","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1016\/j.neuron.2012.10.002","article-title":"The Neuronal Organization of the Retina","volume":"76","author":"RH Masland","year":"2012","journal-title":"Neuron"},{"issue":"7586","key":"pcbi.1012370.ref021","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1038\/nature16468","article-title":"The functional diversity of retinal ganglion cells in the mouse","volume":"529","author":"T Baden","year":"2016","journal-title":"Nature"},{"key":"pcbi.1012370.ref022","doi-asserted-by":"crossref","first-page":"100844","DOI":"10.1016\/j.preteyeres.2020.100844","article-title":"Cell types and cell circuits in human and non-human primate retina","volume":"78","author":"U Gr\u00fcnert","year":"2020","journal-title":"Prog Retin Eye Res"},{"issue":"2","key":"pcbi.1012370.ref023","doi-asserted-by":"crossref","first-page":"111040","DOI":"10.1016\/j.celrep.2022.111040","article-title":"Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression","volume":"40","author":"J Goetz","year":"2022","journal-title":"Cell Rep"},{"issue":"2","key":"pcbi.1012370.ref024","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1038\/nmeth.2333","article-title":"An optimized fluorescent probe for visualizing glutamate neurotransmission.","volume":"10","author":"JS Marvin","year":"2013","journal-title":"Nat Methods"},{"issue":"7642","key":"pcbi.1012370.ref025","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1038\/nature21394","article-title":"Inhibition decorrelates visual feature representations in the inner retina","volume":"542","author":"K Franke","year":"2017","journal-title":"Nature"},{"key":"pcbi.1012370.ref026","doi-asserted-by":"crossref","first-page":"e05241","DOI":"10.7554\/eLife.05241","article-title":"Mapping nonlinear receptive field structure in primate retina at single cone resolution","volume":"4","author":"J Freeman","year":"2015","journal-title":"eLife"},{"issue":"1","key":"pcbi.1012370.ref027","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1038\/s41467-017-00156-9","article-title":"Inference of neuronal functional circuitry with spike-triggered non-negative matrix factorization","volume":"8","author":"JK Liu","year":"2017","journal-title":"Nat Commun"},{"issue":"2","key":"pcbi.1012370.ref028","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1016\/j.cub.2016.11.040","article-title":"Neural Circuit Inference from Function to Structure","volume":"27","author":"E Real","year":"2017","journal-title":"Curr Biol"},{"issue":"8","key":"pcbi.1012370.ref029","doi-asserted-by":"crossref","first-page":"e1006291","DOI":"10.1371\/journal.pcbi.1006291","article-title":"Inferring hidden structure in multilayered neural circuits","volume":"14","author":"N Maheswaranathan","year":"2018","journal-title":"PLOS Comput Biol"},{"issue":"17","key":"pcbi.1012370.ref030","doi-asserted-by":"crossref","first-page":"2742","DOI":"10.1016\/j.neuron.2023.06.007","article-title":"Interpreting the retinal neural code for natural scenes: From computations to neurons","volume":"111","author":"N Maheswaranathan","year":"2023","journal-title":"Neuron"},{"key":"pcbi.1012370.ref031","doi-asserted-by":"crossref","first-page":"e45743","DOI":"10.7554\/eLife.45743","article-title":"Inference of nonlinear receptive field subunits with spike-triggered clustering","volume":"9","author":"NP Shah","year":"2020","journal-title":"eLife"},{"issue":"11","key":"pcbi.1012370.ref032","doi-asserted-by":"crossref","first-page":"780","DOI":"10.1364\/OL.19.000780","article-title":"Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy","volume":"19","author":"SW Hell","year":"1994","journal-title":"Opt Lett"},{"issue":"5828","key":"pcbi.1012370.ref033","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1126\/science.1137395","article-title":"Far-Field Optical Nanoscopy.","volume":"316","author":"SW Hell","year":"2007","journal-title":"Science"},{"key":"pcbi.1012370.ref034","article-title":"The Mathematics of Computerized Tomography.","author":"F. Natterer","year":"2001","journal-title":"Philadelphia: Society for Industrial and Applied Mathematics"},{"issue":"5","key":"pcbi.1012370.ref035","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1088\/0031-9155\/21\/5\/001","article-title":"Principles of Computer Assisted Tomography (CAT) in Radiographic and Radioisotopic Imaging.","volume":"21","author":"RA Brooks","year":"1976","journal-title":"Phys Med Biol"},{"issue":"5","key":"pcbi.1012370.ref036","doi-asserted-by":"crossref","first-page":"2185","DOI":"10.1007\/s00330-018-5810-7","article-title":"The evolution of image reconstruction for CT\u2014from filtered back projection to artificial intelligence","volume":"29","author":"MJ Willemink","year":"2019","journal-title":"Eur Radiol"},{"issue":"3","key":"pcbi.1012370.ref037","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1016\/j.cub.2013.12.020","article-title":"Visual Space is Represented by Nonmatching Topographies of Distinct Mouse Retinal Ganglion Cell Types","volume":"24","author":"A Bleckert","year":"2014","journal-title":"Curr Biol"},{"issue":"5","key":"pcbi.1012370.ref038","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1016\/j.cub.2018.01.016","article-title":"Inhomogeneous Encoding of the Visual Field in the Mouse Retina","volume":"28","author":"RA Warwick","year":"2018","journal-title":"Curr Biol"},{"issue":"1","key":"pcbi.1012370.ref039","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1002\/(SICI)1096-9861(20000103)416:1<6::AID-CNE2>3.0.CO;2-X","article-title":"Diffuse Bipolar Cells Provide Input to OFF Parasol Ganglion Cells in the Macaque Retina","volume":"416","author":"RA Jacoby","year":"2000","journal-title":"J Comp Neurol"},{"issue":"10","key":"pcbi.1012370.ref040","doi-asserted-by":"crossref","first-page":"2646","DOI":"10.1523\/JNEUROSCI.4739-06.2007","article-title":"Microcircuitry for Two Types of Achromatic Ganglion Cell in Primate Fovea","volume":"27","author":"DJ Calkins","year":"2007","journal-title":"J Neurosci"},{"key":"pcbi.1012370.ref041","first-page":"122","article-title":"OFF bipolar cells in macaque retina: type-specific connectivity in the outer and inner synaptic layers.","volume":"9","author":"Y Tsukamoto","year":"2015","journal-title":"Front Neuroanat"},{"key":"pcbi.1012370.ref042","doi-asserted-by":"crossref","first-page":"104","DOI":"10.3389\/fnana.2016.00104","article-title":"ON Bipolar Cells in Macaque Retina: Type-Specific Synaptic Connectivity with Special Reference to OFF Counterparts.","volume":"10","author":"Y Tsukamoto","year":"2016","journal-title":"Front Neuroanat."},{"issue":"9","key":"pcbi.1012370.ref043","doi-asserted-by":"crossref","first-page":"1839","DOI":"10.1002\/cne.23925","article-title":"Connectivity Between the OFF Bipolar Type DB3a and Six Types of Ganglion Cell in the Marmoset Retina","volume":"524","author":"RA Masri","year":"2016","journal-title":"J Comp Neurol"},{"issue":"10","key":"pcbi.1012370.ref044","doi-asserted-by":"crossref","first-page":"1692","DOI":"10.1016\/j.neuron.2021.03.015","article-title":"Nonlinear spatial integration in retinal bipolar cells shapes the encoding of artificial and natural stimuli","volume":"109","author":"HM Schreyer","year":"2021","journal-title":"Neuron"},{"issue":"3","key":"pcbi.1012370.ref045","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1113\/jphysiol.2009.179036","article-title":"Cones perform a non-linear transformation on natural stimuli","volume":"588","author":"D Endeman","year":"2010","journal-title":"J Physiol"},{"issue":"7","key":"pcbi.1012370.ref046","doi-asserted-by":"crossref","first-page":"1254","DOI":"10.1523\/JNEUROSCI.0793-21.2021","article-title":"Predicting and Manipulating Cone Responses to Naturalistic Inputs","volume":"42","author":"JM Angueyra","year":"2022","journal-title":"J Neurosci"},{"issue":"1","key":"pcbi.1012370.ref047","doi-asserted-by":"crossref","first-page":"3486","DOI":"10.1038\/s41467-023-38943-2","article-title":"Mechanisms of simultaneous linear and nonlinear computations at the mammalian cone photoreceptor synapse","volume":"14","author":"CP Grabner","year":"2023","journal-title":"Nat Commun"},{"issue":"1","key":"pcbi.1012370.ref048","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1002\/cne.24157","article-title":"Survey of retinal ganglion cell morphology in marmoset","volume":"527","author":"RA Masri","year":"2019","journal-title":"J Comp Neurol"},{"key":"pcbi.1012370.ref049","doi-asserted-by":"crossref","first-page":"e70611","DOI":"10.7554\/eLife.70611","article-title":"Adaptation in cone photoreceptors contributes to an unexpected insensitivity of primate On parasol retinal ganglion cells to spatial structure in natural images","volume":"11","author":"Z Yu","year":"2022","journal-title":"eLife"},{"issue":"22","key":"pcbi.1012370.ref050","doi-asserted-by":"crossref","first-page":"7548","DOI":"10.1523\/JNEUROSCI.0413-14.2014","article-title":"Nonlinear Spatial Integration in the Receptive Field Surround of Retinal Ganglion Cells","volume":"34","author":"D Takeshita","year":"2014","journal-title":"J Neurosci"},{"issue":"46","key":"pcbi.1012370.ref051","doi-asserted-by":"crossref","first-page":"e2121744119","DOI":"10.1073\/pnas.2121744119","article-title":"Systematic reduction of the dimensionality of natural scenes allows accurate predictions of retinal ganglion cell spike outputs","volume":"119","author":"J Freedland","year":"2022","journal-title":"Proc Natl Acad Sci"},{"issue":"2","key":"pcbi.1012370.ref052","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1002\/cne.1280","article-title":"Bipolar Cell Diversity in the Primate Retina: Morphologic and Immunocytochemical Analysis of a New World Monkey, the Marmoset Callithrix jacchus","volume":"437","author":"TL Chan","year":"2001","journal-title":"J Comp Neurol"},{"issue":"3","key":"pcbi.1012370.ref053","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1113\/jphysiol.1959.sp006308","article-title":"Receptive fields of single neurones in the cat\u2019s striate cortex","volume":"148","author":"DH Hubel","year":"1959","journal-title":"J Physiol"},{"issue":"1","key":"pcbi.1012370.ref054","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1113\/jphysiol.1962.sp006837","article-title":"Receptive fields, binocular interaction and functional architecture in the cat\u2019s visual cortex","volume":"160","author":"DH Hubel","year":"1962","journal-title":"J Physiol"},{"issue":"4","key":"pcbi.1012370.ref055","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1017\/S0952523800003011","article-title":"Two-dimensional receptive-field organization in striate cortical neurons of the cat","volume":"11","author":"M Sun","year":"1994","journal-title":"Vis Neurosci"},{"issue":"22","key":"pcbi.1012370.ref056","doi-asserted-by":"crossref","first-page":"4839","DOI":"10.1113\/jphysiol.2014.276642","article-title":"Rapid mapping of visual receptive fields by filtered back projection: application to multi-neuronal electrophysiology and imaging","volume":"592","author":"J Johnston","year":"2014","journal-title":"J Physiol"},{"issue":"6","key":"pcbi.1012370.ref057","doi-asserted-by":"crossref","DOI":"10.1523\/ENEURO.0046-21.2021","article-title":"Rapid Analysis of Visual Receptive Fields by Iterative Tomography.","volume":"8","author":"CD Eiber","year":"2021","journal-title":"eNeuro"},{"issue":"10","key":"pcbi.1012370.ref058","doi-asserted-by":"crossref","first-page":"2543","DOI":"10.1162\/NECO_a_00334","article-title":"Mapping of Visual Receptive Fields by Tomographic Reconstruction.","volume":"24","author":"G Pipa","year":"2012","journal-title":"Neural Comput."},{"key":"pcbi.1012370.ref059","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1016\/j.jneumeth.2013.09.012","article-title":"Automatic mapping of visual cortex receptive fields: A fast and precise algorithm","volume":"221","author":"M Fiorani","year":"2014","journal-title":"J Neurosci Methods"},{"issue":"1","key":"pcbi.1012370.ref060","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1167\/14.1.17","article-title":"Measurement of population receptive fields in human early visual cortex using back-projection tomography.","volume":"14","author":"CA Greene","year":"2014","journal-title":"J Vis."},{"issue":"12","key":"pcbi.1012370.ref061","doi-asserted-by":"crossref","first-page":"R63","DOI":"10.1088\/0031-9155\/58\/12\/R63","article-title":"Modelling the physics in the iterative reconstruction for transmission computed tomography","volume":"58","author":"J Nuyts","year":"2013","journal-title":"Phys Med Biol"},{"issue":"6","key":"pcbi.1012370.ref062","doi-asserted-by":"crossref","first-page":"1322","DOI":"10.1109\/TMI.2018.2799231","article-title":"Learned Primal-Dual Reconstruction","volume":"37","author":"J Adler","year":"2018","journal-title":"IEEE Trans Med Imaging"},{"issue":"8","key":"pcbi.1012370.ref063","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1038\/s42256-019-0077-5","article-title":"Learning with known operators reduces maximum error bounds.","volume":"1","author":"AK Maier","year":"2019","journal-title":"Nat Mach Intell"},{"issue":"12","key":"pcbi.1012370.ref064","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1038\/s42256-020-00273-z","article-title":"Deep learning for tomographic image reconstruction.","volume":"2","author":"G Wang","year":"2020","journal-title":"Nat Mach Intell"},{"issue":"6","key":"pcbi.1012370.ref065","doi-asserted-by":"crossref","first-page":"1719","DOI":"10.1109\/TSMCB.2012.2228639","article-title":"A Generalized Laplacian of Gaussian Filter for Blob Detection and Its Applications","volume":"43","author":"H Kong","year":"2013","journal-title":"IEEE Trans Cybern"},{"key":"pcbi.1012370.ref066","article-title":"Natural stimuli drive concerted nonlinear responses in populations of retinal ganglion cells","author":"D Karamanlis","journal-title":"bioRxiv"},{"issue":"1","key":"pcbi.1012370.ref067","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1002\/(SICI)1096-9861(20000103)416:1<19::AID-CNE3>3.0.CO;2-H","article-title":"Synaptic Connections of DB3 Diffuse Bipolar Cell Axons in Macaque Retina","volume":"416","author":"RA Jacoby","year":"2000","journal-title":"J Comp Neurol"},{"issue":"6","key":"pcbi.1012370.ref068","doi-asserted-by":"crossref","first-page":"1327","DOI":"10.1016\/j.neuron.2018.02.006","article-title":"Neural Mechanisms Mediating Motion Sensitivity in Parasol Ganglion Cells of the Primate Retina","volume":"97","author":"MB Manookin","year":"2018","journal-title":"Neuron"},{"issue":"14","key":"pcbi.1012370.ref069","doi-asserted-by":"crossref","first-page":"1801","DOI":"10.1016\/S0042-6989(00)00039-0","article-title":"Center surround receptive field structure of cone bipolar cells in primate retina","volume":"40","author":"D Dacey","year":"2000","journal-title":"Vision Res"},{"issue":"5","key":"pcbi.1012370.ref070","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1016\/j.preteyeres.2012.04.003","article-title":"Lateral interactions in the outer retina.","volume":"31","author":"WB Thoreson","year":"2012","journal-title":"Prog Retin Eye Res"},{"issue":"27","key":"pcbi.1012370.ref071","doi-asserted-by":"crossref","first-page":"5177","DOI":"10.1523\/JNEUROSCI.0471-20.2020","article-title":"Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types","volume":"40","author":"W Yan","year":"2020","journal-title":"J Neurosci"},{"issue":"16","key":"pcbi.1012370.ref072","doi-asserted-by":"crossref","first-page":"5507","DOI":"10.1113\/JP273648","article-title":"General features of inhibition in the inner retina","volume":"595","author":"K Franke","year":"2017","journal-title":"J Physiol"},{"issue":"1\u20132","key":"pcbi.1012370.ref073","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1017\/S0952523810000076","article-title":"Six different roles for crossover inhibition in the retina: Correcting the nonlinearities of synaptic transmission","volume":"27","author":"FS Werblin","year":"2010","journal-title":"Vis Neurosci"},{"issue":"2","key":"pcbi.1012370.ref074","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.neuron.2016.03.012","article-title":"Nonlinear Spatiotemporal Integration by Electrical and Chemical Synapses in the Retina","volume":"90","author":"SP Kuo","year":"2016","journal-title":"Neuron"},{"issue":"1","key":"pcbi.1012370.ref075","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/82888","article-title":"Spatial scale and cellular substrate of contrast adaptation by retinal ganglion cells","volume":"4","author":"SP Brown","year":"2001","journal-title":"Nat Neurosci"},{"issue":"5","key":"pcbi.1012370.ref076","doi-asserted-by":"crossref","first-page":"915","DOI":"10.1016\/j.neuron.2012.12.030","article-title":"Local and Global Contrast Adaptation in Retinal Ganglion Cells","volume":"77","author":"MM Garvert","year":"2013","journal-title":"Neuron"},{"issue":"6","key":"pcbi.1012370.ref077","doi-asserted-by":"crossref","first-page":"3024","DOI":"10.1152\/jn.00529.2017","article-title":"Diversity in spatial scope of contrast adaptation among mouse retinal ganglion cells","volume":"118","author":"MH Khani","year":"2017","journal-title":"J Neurophysiol"},{"issue":"11","key":"pcbi.1012370.ref078","doi-asserted-by":"crossref","first-page":"1581","DOI":"10.1038\/nn.3241","article-title":"Divergence of visual channels in the inner retina","volume":"15","author":"H Asari","year":"2012","journal-title":"Nat Neurosci"},{"issue":"26","key":"pcbi.1012370.ref079","doi-asserted-by":"crossref","first-page":"8372","DOI":"10.1523\/JNEUROSCI.1218-09.2009","article-title":"Parallel ON and OFF Cone Bipolar Inputs Establish Spatially Coextensive Receptive Field Structure of Blue-Yellow Ganglion Cells in Primate Retina","volume":"29","author":"JD Crook","year":"2009","journal-title":"J Neurosci"},{"issue":"48","key":"pcbi.1012370.ref080","doi-asserted-by":"crossref","first-page":"13261","DOI":"10.1523\/JNEUROSCI.3437-07.2007","article-title":"Spatial Properties and Functional Organization of Small Bistratified Ganglion Cells in Primate Retina","volume":"27","author":"GD Field","year":"2007","journal-title":"J Neurosci"},{"issue":"6","key":"pcbi.1012370.ref081","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1016\/0042-6989(82)90104-3","article-title":"The \u201csilent substitution\u201d method in visual research.","volume":"22","author":"O Est\u00e9vez","year":"1982","journal-title":"Vision Res"},{"issue":"44","key":"pcbi.1012370.ref082","doi-asserted-by":"crossref","first-page":"14829","DOI":"10.1523\/JNEUROSCI.2815-13.2015","article-title":"A Convolutional Subunit Model for Neuronal Responses in Macaque V1","volume":"35","author":"B Vintch","year":"2015","journal-title":"J Neurosci"},{"issue":"9","key":"pcbi.1012370.ref083","doi-asserted-by":"crossref","first-page":"5067","DOI":"10.1093\/cercor\/bhaa102","article-title":"Mechanisms of Feature Selectivity and Invariance in Primary Visual Cortex","volume":"30","author":"A Almasi","year":"2020","journal-title":"Cereb Cortex"},{"issue":"2","key":"pcbi.1012370.ref084","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1152\/jn.00416.2021","article-title":"Model-based characterization of the selectivity of neurons in primary visual cortex","volume":"128","author":"F Bartsch","year":"2022","journal-title":"J Neurophysiol"},{"issue":"16","key":"pcbi.1012370.ref085","doi-asserted-by":"crossref","first-page":"E972","DOI":"10.1073\/pnas.1115685109","article-title":"Hierarchical processing of complex motion along the primate dorsal visual pathway","volume":"109","author":"PJ Mineault","year":"2012","journal-title":"Proc Natl Acad Sci"},{"issue":"32","key":"pcbi.1012370.ref086","first-page":"8399","article-title":"3D Visual Response Properties of MSTd Emerge from an Efficient","volume":"36","author":"M Beyeler","year":"2016","journal-title":"Sparse Population Code. J Neurosci"},{"issue":"8","key":"pcbi.1012370.ref087","doi-asserted-by":"crossref","first-page":"1929","DOI":"10.1523\/JNEUROSCI.3377-07.2008","article-title":"Nonlinearities and Contextual Influences in Auditory Cortical Responses Modeled with Multilinear Spectrotemporal Methods","volume":"28","author":"MB Ahrens","year":"2008","journal-title":"J Neurosci"},{"issue":"7","key":"pcbi.1012370.ref088","doi-asserted-by":"crossref","first-page":"e1003143","DOI":"10.1371\/journal.pcbi.1003143","article-title":"Inferring Nonlinear Neuronal Computation Based on Physiologically Plausible Inputs.","volume":"9","author":"JM McFarland","year":"2013","journal-title":"PLOS Comput Biol."},{"key":"pcbi.1012370.ref089","doi-asserted-by":"crossref","first-page":"e53445","DOI":"10.7554\/eLife.53445","article-title":"Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models.","volume":"9","author":"M Keshishian","year":"2020","journal-title":"eLife"},{"issue":"5","key":"pcbi.1012370.ref090","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1177\/1073858403252732","article-title":"Complex Receptive Fields in Primary Visual Cortex.","volume":"9","author":"LM Martinez","year":"2003","journal-title":"The Neuroscientist."},{"issue":"46","key":"pcbi.1012370.ref091","doi-asserted-by":"crossref","first-page":"10577","DOI":"10.1523\/JNEUROSCI.3726-05.2005","article-title":"Do We Know What the Early Visual System Does","volume":"25","author":"M Carandini","year":"2005","journal-title":"J Neurosci"},{"key":"pcbi.1012370.ref092","first-page":"4448","article-title":"Fast and accurate spike sorting of high-channel count probes with KiloSort.","author":"M Pachitariu","year":"2016","journal-title":"Advances in Neural Information Processing Systems"},{"issue":"22","key":"pcbi.1012370.ref093","doi-asserted-by":"crossref","first-page":"3083","DOI":"10.1016\/0042-6989(95)00114-F","article-title":"Photoreceptor Spectral Sensitivities: Common Shape in the Long-wavelength Region","volume":"35","author":"TD Lamb","year":"1995","journal-title":"Vision Res"},{"issue":"4","key":"pcbi.1012370.ref094","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1016\/0042-6989(88)90170-8","article-title":"Polymorphism of visual pigments in a callitrichid monkey","volume":"28","author":"DS Travis","year":"1988","journal-title":"Vision Res"},{"issue":"1","key":"pcbi.1012370.ref095","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1113\/jphysiol.1990.sp018193","article-title":"Visual transduction in cones of the monkey macaca fascicularis","volume":"427","author":"JL Schnapf","year":"1990","journal-title":"J Physiol"},{"issue":"5","key":"pcbi.1012370.ref096","doi-asserted-by":"crossref","first-page":"867","DOI":"10.1016\/0042-6989(92)90029-I","article-title":"The Relationship Between Cone Pigments and Behavioural Sensitivity in a New World Monkey (Callithrix jacchus jacchus).","volume":"32","author":"MJ Tov\u00e9e","year":"1992","journal-title":"Vision Res"},{"issue":"5213","key":"pcbi.1012370.ref097","doi-asserted-by":"crossref","first-page":"1053","DOI":"10.1126\/science.7754386","article-title":"Photovoltage of Rods and Cones in the Macaque Retina","volume":"268","author":"DM Schneeweis","year":"1995","journal-title":"Science"}],"updated-by":[{"DOI":"10.1371\/journal.pcbi.1012370","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T00:00:00Z","timestamp":1726185600000}}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1012370","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,13]],"date-time":"2024-09-13T14:18:38Z","timestamp":1726237118000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1012370"}},"subtitle":[],"editor":[{"given":"Lyle J.","family":"Graham","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2024,9,3]]},"references-count":97,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2024,9,3]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1012370","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2023.11.27.568854","asserted-by":"object"}]},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,9,3]]}}}