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Copeland Independent Study Fund"],"award-info":[{"award-number":["Henry J. Copeland Independent Study Fund"]}],"id":[{"id":"10.13039\/100019883","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100019883","name":"College of Wooster","doi-asserted-by":"publisher","award":["Biochemistry and Molecular Biology Program"],"award-info":[{"award-number":["Biochemistry and Molecular Biology Program"]}],"id":[{"id":"10.13039\/100019883","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>The tumor microenvironment aids cancer progression by promoting several cancer hallmarks, independent of cancer-related mutations. Biophysical properties of this environment, such as the stiffness of the matrix cells adhere to and local cell density, impact proliferation, apoptosis, and the epithelial to mesenchymal transition (EMT). The latter is a rate-limiting step for invasion and metastasis, enhanced in hypoxic tumor environments but hindered by soft matrices and\/or high cell densities. As these influences are often studied in isolation, the crosstalk between hypoxia, biomechanical signals, and the classic EMT driver TGF-\u03b2 is not well mapped, limiting our ability to predict and anticipate cancer cell behaviors in changing tumor environments. To address this, we built a Boolean regulatory network model that integrates hypoxic signaling with a mechanosensitive model of EMT, which includes the EMT-promoting crosstalk of mitogens and biomechanical signals, cell cycle control, and apoptosis. Our model reproduces the requirement of Hif-1\u03b1 for proliferation, the anti-proliferative effects of strong Hif-1\u03b1 stabilization during hypoxia, hypoxic protection from anoikis, and hypoxia-driven mechanosensitive EMT. We offer experimentally testable predictions about the effect of VHL loss on cancer hallmarks, with or without secondary oncogene activation. Taken together, our model serves as a predictive framework to synthesize the signaling responses associated with tumor progression and metastasis in healthy vs. mutant cells. Our single-cell model is a key step towards more extensive regulatory network models that cover damage-response and senescence, integrating most cell-autonomous cancer hallmarks into a single model that can, in turn, control the behavior of in silico cells within a tissue model of epithelial homeostasis and carcinoma.<\/jats:p>","DOI":"10.1371\/journal.pcbi.1012735","type":"journal-article","created":{"date-parts":[[2025,4,16]],"date-time":"2025-04-16T13:48:36Z","timestamp":1744811316000},"page":"e1012735","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":4,"title":["A Boolean network model of hypoxia, mechanosensing and TGF-\u03b2 signaling captures the role of phenotypic plasticity and mutations in tumor 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