{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T19:57:21Z","timestamp":1773345441922,"version":"3.50.1"},"reference-count":50,"publisher":"Public Library of Science (PLoS)","issue":"11","license":[{"start":{"date-parts":[[2010,11,11]],"date-time":"2010-11-11T00:00:00Z","timestamp":1289433600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0015499","type":"journal-article","created":{"date-parts":[[2010,11,19]],"date-time":"2010-11-19T21:47:27Z","timestamp":1290203247000},"page":"e15499","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":123,"title":["A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes"],"prefix":"10.1371","volume":"5","author":[{"given":"Tanja","family":"Scherrer","sequence":"first","affiliation":[]},{"given":"Nitish","family":"Mittal","sequence":"additional","affiliation":[]},{"given":"Sarath Chandra","family":"Janga","sequence":"additional","affiliation":[]},{"given":"Andr\u00e9 P.","family":"Gerber","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2010,11,11]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1038\/nrm2124","article-title":"Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs.","volume":"8","author":"AG Matera","year":"2007","journal-title":"Nat Rev Mol Cell Biol"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"1514","DOI":"10.1126\/science.1111443","article-title":"From birth to death: the complex lives of eukaryotic mRNAs.","volume":"309","author":"MJ Moore","year":"2005","journal-title":"Science"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1038\/416499a","article-title":"An extensive network of coupling among gene expression machines.","volume":"416","author":"T Maniatis","year":"2002","journal-title":"Nature"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"E79","DOI":"10.1371\/journal.pbio.0020079","article-title":"Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast.","volume":"2","author":"AP Gerber","year":"2004","journal-title":"PLoS Biol"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"4487","DOI":"10.1073\/pnas.0509260103","article-title":"Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster.","volume":"103","author":"AP Gerber","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"e255","DOI":"10.1371\/journal.pbio.0060255","article-title":"Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system.","volume":"6","author":"DJ Hogan","year":"2008","journal-title":"PLoS Biol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1038\/nrg2111","article-title":"RNA regulons: coordination of post-transcriptional events.","volume":"8","author":"JD Keene","year":"2007","journal-title":"Nat Rev Genet"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"798","DOI":"10.1007\/s00018-007-7447-6","article-title":"Post-transcriptional gene regulation: from genome-wide studies to principles.","volume":"65","author":"RE Halbeisen","year":"2008","journal-title":"Cell Mol Life Sci"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1002\/wsbm.54","article-title":"Systematic analysis of posttranscriptional gene expression.","volume":"2","author":"AR Morris","year":"2010","journal-title":"Wiley Interdiscip Rev Syst Biol Med"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"1977","DOI":"10.1016\/j.febslet.2008.03.004","article-title":"RNA-binding proteins and post-transcriptional gene regulation.","volume":"582","author":"T Glisovic","year":"2008","journal-title":"FEBS Lett"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1427","DOI":"10.1093\/nar\/30.7.1427","article-title":"Comparative genomics and evolution of proteins involved in RNA metabolism.","volume":"30","author":"V Anantharaman","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1016\/j.tibs.2010.05.009","article-title":"The REM phase of gene regulation.","volume":"35","author":"MW Hentze","year":"2010","journal-title":"Trends Biochem Sci"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"11","DOI":"10.18388\/abp.2006_3360","article-title":"Metabolic enzymes that bind RNA: yet another level of cellular regulatory network?","volume":"53","author":"J Ciesla","year":"2006","journal-title":"Acta Biochim Pol"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/0968-0004(94)90198-8","article-title":"Enzymes as RNA-binding proteins: a role for (di)nucleotide-binding domains?","volume":"19","author":"MW Hentze","year":"1994","journal-title":"Trends Biochem Sci"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"2521","DOI":"10.2741\/1413","article-title":"Translational autoregulation of thymidylate synthase and dihydrofolate reductase.","volume":"9","author":"N Tai","year":"2004","journal-title":"Front Biosci"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1016\/S0092-8674(04)00343-5","article-title":"Balancing acts: molecular control of mammalian iron metabolism.","volume":"117","author":"MW Hentze","year":"2004","journal-title":"Cell"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"3129","DOI":"10.1073\/pnas.0611617104","article-title":"RNA-binding proteins that inhibit RNA virus infection.","volume":"104","author":"J Zhu","year":"2007","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"18005","DOI":"10.1073\/pnas.0509229102","article-title":"Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae.","volume":"102","author":"A Jambhekar","year":"2005","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"11429","DOI":"10.1073\/pnas.2033246100","article-title":"Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis.","volume":"100","author":"KA Shepard","year":"2003","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1016\/j.ygeno.2003.11.004","article-title":"ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments.","volume":"83","author":"MJ Buck","year":"2004","journal-title":"Genomics"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1126\/science.1096773","article-title":"Regulation of gene expression by a metabolic enzyme.","volume":"306","author":"DA Hall","year":"2004","journal-title":"Science"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1186\/gb-2007-8-8-407","article-title":"Impacts of yeast metabolic network structure on enzyme evolution.","volume":"8","author":"C Lu","year":"2007","journal-title":"Genome Biol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"D211","DOI":"10.1093\/nar\/gkp985","article-title":"The Pfam protein families database.","volume":"38","author":"RD Finn","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/S0968-0004(97)01058-X","article-title":"A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex).","volume":"22","author":"A Lupas","year":"1997","journal-title":"Trends Biochem Sci"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1016\/j.tibs.2003.10.007","article-title":"TPR proteins: the versatile helix.","volume":"28","author":"LD D'Andrea","year":"2003","journal-title":"Trends Biochem Sci"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"D866","DOI":"10.1093\/nar\/gkm815","article-title":"Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata.","volume":"36","author":"JJ Faith","year":"2008","journal-title":"Nucleic Acids Res"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"e15","DOI":"10.1093\/nar\/gng015","article-title":"Summaries of Affymetrix GeneChip probe level data.","volume":"31","author":"RA Irizarry","year":"2003","journal-title":"Nucleic Acids Res"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"20300","DOI":"10.1073\/pnas.0906940106","article-title":"Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.","volume":"106","author":"N Mittal","year":"2009","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1038\/nature02046","article-title":"Global analysis of protein expression in yeast.","volume":"425","author":"S Ghaemmaghami","year":"2003","journal-title":"Nature"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1002\/wsbm.55","article-title":"Circuitry of mRNA regulation.","volume":"2","author":"A Kanitz","year":"2010","journal-title":"Wiley Interdiscip Rev Syst Biol Med"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"8007","DOI":"10.1016\/S0021-9258(18)42400-3","article-title":"Molecular cloning, sequencing, deletion, and overexpression of a methionine aminopeptidase gene from Saccharomyces cerevisiae.","volume":"267","author":"YH Chang","year":"1992","journal-title":"J Biol Chem"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"12357","DOI":"10.1073\/pnas.92.26.12357","article-title":"Amino-terminal protein processing in Saccharomyces cerevisiae is an essential function that requires two distinct methionine aminopeptidases.","volume":"92","author":"X Li","year":"1995","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"678","DOI":"10.1002\/jcb.10161","article-title":"Yeast methionine aminopeptidase type 1 is ribosome-associated and requires its N-terminal zinc finger domain for normal function in vivo.","volume":"85","author":"JA Vetro","year":"2002","journal-title":"J Cell Biochem"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1016\/j.sbi.2005.01.006","article-title":"Zinc finger proteins: getting a grip on RNA.","volume":"15","author":"RS Brown","year":"2005","journal-title":"Curr Opin Struct Biol"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1007\/BF00294688","article-title":"Evidence that two zinc fingers in the methionine aminopeptidase from Saccharomyces cerevisiae are important for normal growth.","volume":"246","author":"S Zuo","year":"1995","journal-title":"Mol Gen Genet"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"2101","DOI":"10.1126\/science.1062191","article-title":"Global analysis of protein activities using proteome chips.","volume":"293","author":"H Zhu","year":"2001","journal-title":"Science"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1016\/j.cell.2009.08.037","article-title":"Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling.","volume":"139","author":"S Hu","year":"2009","journal-title":"Cell"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1016\/j.tig.2004.07.004","article-title":"Metabolic enzymes and coenzymes in transcription\u2014a direct link between metabolism and transcription?","volume":"20","author":"Y Shi","year":"2004","journal-title":"Trends Genet"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1016\/S0968-0004(99)01520-0","article-title":"The PPR motif - a TPR-related motif prevalent in plant organellar proteins.","volume":"25","author":"ID Small","year":"2000","journal-title":"Trends Biochem Sci"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1038\/nrm2178","article-title":"RNA-binding proteins: modular design for efficient function.","volume":"8","author":"BM Lunde","year":"2007","journal-title":"Nat Rev Mol Cell Biol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"52998","DOI":"10.1074\/jbc.M409581200","article-title":"Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae.","volume":"279","author":"I Behm-Ansmant","year":"2004","journal-title":"J Biol Chem"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"15753","DOI":"10.1073\/pnas.0707476104","article-title":"The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.","volume":"104","author":"P Daran-Lapujade","year":"2007","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"e12671","DOI":"10.1371\/journal.pone.0012671","article-title":"Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae.","volume":"5","author":"NG Tsvetanova","year":"2010","journal-title":"PLoS One"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"2816","DOI":"10.1101\/gad.1362105","article-title":"Biochemical and genetic analysis of the yeast proteome with a movable ORF collection.","volume":"19","author":"DM Gelperin","year":"2005","journal-title":"Genes Dev"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/S0076-6879(02)50954-X","article-title":"Getting started with yeast.","volume":"350","author":"F Sherman","year":"2002","journal-title":"Methods Enzymol"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1016\/0076-6879(91)94030-G","article-title":"Preparation of high molecular weight RNA.","volume":"194","author":"K Kohrer","year":"1991","journal-title":"Methods Enzymol"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1016\/j.ymeth.2009.04.003","article-title":"Affinity purification of ribosomes to access the translatome.","volume":"48","author":"RE Halbeisen","year":"2009","journal-title":"Methods"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"D766","DOI":"10.1093\/nar\/gkl1019","article-title":"The Stanford Microarray Database: implementation of new analysis tools and open source release of software.","volume":"35","author":"J Demeter","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1093\/bioinformatics\/17.6.509","article-title":"A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.","volume":"17","author":"P Baldi","year":"2001","journal-title":"Bioinformatics"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"3710","DOI":"10.1093\/bioinformatics\/bth456","article-title":"GO::TermFinder\u2014open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.","volume":"20","author":"EI Boyle","year":"2004","journal-title":"Bioinformatics"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0015499","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,11,13]],"date-time":"2021-11-13T21:09:21Z","timestamp":1636837761000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0015499"}},"subtitle":[],"editor":[{"given":"J\u00fcrg","family":"B\u00e4hler","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2010,11,11]]},"references-count":50,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2010,11,11]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0015499","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,11,11]]}}}