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Rasmussen","year":"1995","journal-title":"Microbiology"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"2707","DOI":"10.1128\/IAI.65.7.2707-2716.1997","article-title":"Ribotypes and virulence gene polymorphisms suggest three distinct <italic>Listeria monocytogenes<\/italic> lineages with differences in pathogenic potential.","volume":"65","author":"M Wiedmann","year":"1997","journal-title":"Infect Immun"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"4994","DOI":"10.1128\/JB.186.15.4994-5002.2004","article-title":"Intraspecific phylogeny and lineage group identification based on the <italic>prfA<\/italic> virulence gene cluster of <italic>Listeria monocytogenes<\/italic>.","volume":"186","author":"TJ Ward","year":"2004","journal-title":"J Bacteriol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1128\/IAI.72.2.1072-1083.2004","article-title":"New aspects regarding evolution and virulence of <italic>Listeria monocytogenes<\/italic> 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Rev Microbiol"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1016\/0092-8674(91)90009-N","article-title":"Entry of <italic>Listeria monocytogenes<\/italic> into cells is mediated by internalin, a repeat protein reminiscent of surface antigens from gram-positive cocci.","volume":"65","author":"JL Gaillard","year":"1991","journal-title":"Cell"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1016\/S0092-8674(00)81070-3","article-title":"E-cadherin is the receptor for internalin, a surface protein required for entry of <italic>Listeria monocytogenes<\/italic> into epithelial cells.","volume":"84","author":"J Mengaud","year":"1996","journal-title":"Cell"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"1722","DOI":"10.1126\/science.1059852","article-title":"A transgenic model for listeriosis: role of internalin in crossing the intestinal barrier.","volume":"292","author":"M Lecuit","year":"2001","journal-title":"Science"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"3819","DOI":"10.1128\/JCM.42.8.3819-3822.2004","article-title":"Differentiation of the major <italic>Listeria monocytogenes<\/italic> serovars by multiplex PCR.","volume":"42","author":"M Doumith","year":"2004","journal-title":"J Clin Microbiol"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"5496","DOI":"10.1128\/JB.186.16.5496-5505.2004","article-title":"Multiple-locus variable-number tandem repeat analysis of Dutch <italic>Bordetella pertussis<\/italic> strains reveals rapid genetic changes with clonal expansion during the late 1990s.","volume":"186","author":"LM Schouls","year":"2004","journal-title":"J Bacteriol"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"1244","DOI":"10.1093\/bioinformatics\/17.12.1244","article-title":"MEGA2: molecular evolutionary genetics analysis software.","volume":"17","author":"S Kumar","year":"2001","journal-title":"Bioinformatics"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1093\/molbev\/msj030","article-title":"Application of phylogenetic networks in evolutionary studies.","volume":"23","author":"DH Huson","year":"2006","journal-title":"Mol Biol Evol"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1093\/bioinformatics\/bth490","article-title":"RDP2: recombination detection and analysis from sequence alignments.","volume":"21","author":"DP Martin","year":"2005","journal-title":"Bioinformatics"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1093\/bioinformatics\/15.2.174","article-title":"DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.","volume":"15","author":"J Rozas","year":"1999","journal-title":"Bioinformatics"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"1251","DOI":"10.1534\/genetics.106.063305","article-title":"Inference of bacterial microevolution using multilocus sequence data.","volume":"175","author":"X Didelot","year":"2007","journal-title":"Genetics"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1128\/JCM.41.4.1623-1636.2003","article-title":"Characterization of encapsulated and noncapsulated <italic>Haemophilus influenzae<\/italic> and determination of phylogenetic relationships by multilocus sequence typing.","volume":"41","author":"E Meats","year":"2003","journal-title":"J Clin Microbiol"},{"key":"ref49","article-title":"PAUP*: phylogenetic analysis using parsimony (and other methods). 4.0b10 ed","author":"DL Swofford","year":"1998"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1073\/pnas.98.1.182","article-title":"Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences.","volume":"98","author":"EJ Feil","year":"2001","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"1496","DOI":"10.1093\/oxfordjournals.molbev.a026061","article-title":"The relative contributions of recombination and mutation to the divergence of clones of <italic>Neisseria meningitidis<\/italic>.","volume":"16","author":"EJ Feil","year":"1999","journal-title":"Mol Biol Evol"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"1380","DOI":"10.1126\/science.7973728","article-title":"Clonal divergence in <italic>Escherichia coli<\/italic> as a result of recombination, not mutation.","volume":"266","author":"DS Guttman","year":"1994","journal-title":"Science"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"1567","DOI":"10.1093\/genetics\/164.4.1567","article-title":"Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.","volume":"164","author":"D Falush","year":"2003","journal-title":"Genetics"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"1231","DOI":"10.1093\/genetics\/160.3.1231","article-title":"A coalescent-based method for detecting and estimating recombination from gene sequences.","volume":"160","author":"G McVean","year":"2002","journal-title":"Genetics"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"1411","DOI":"10.1534\/genetics.105.044917","article-title":"Estimating diversifying selection and functional constraint in the presence of recombination.","volume":"172","author":"DJ Wilson","year":"2006","journal-title":"Genetics"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1093\/genetics\/164.3.1229","article-title":"Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.","volume":"164","author":"M Anisimova","year":"2003","journal-title":"Genetics"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1126\/science.1063447","article-title":"Comparative genomics of <italic>Listeria<\/italic> species.","volume":"294","author":"P Glaser","year":"2001","journal-title":"Science"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"945","DOI":"10.1093\/genetics\/155.2.945","article-title":"Inference of population structure using multilocus genotype data.","volume":"155","author":"JK Pritchard","year":"2000","journal-title":"Genetics"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"2666","DOI":"10.1099\/mic.0.2007\/007310-0","article-title":"Recombination and positive selection contribute to evolution of <italic>Listeria monocytogenes inlA<\/italic>.","volume":"153","author":"RH Orsi","year":"2007","journal-title":"Microbiology"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1016\/S0092-8674(02)01136-4","article-title":"Structure of internalin, a major invasion protein of <italic>Listeria monocytogenes<\/italic>, in complex with its human receptor E-cadherin.","volume":"111","author":"WD Schubert","year":"2002","journal-title":"Cell"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"3420","DOI":"10.1128\/IAI.66.7.3420-3422.1998","article-title":"The inlA gene of <italic>Listeria monocytogenes<\/italic> LO28 harbors a nonsense mutation resulting in release of internalin.","volume":"66","author":"R Jonquieres","year":"1998","journal-title":"Infect Immun"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"8764","DOI":"10.1128\/AEM.71.12.8764-8772.2005","article-title":"Select <italic>Listeria monocytogenes<\/italic> subtypes commonly found in foods carry distinct nonsense mutations in inlA, leading to expression of truncated and secreted internalin A, and are associated with a reduced invasion phenotype for human intestinal epithelial cells.","volume":"71","author":"KK Nightingale","year":"2005","journal-title":"Appl Environ Microbiol"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"1217","DOI":"10.1128\/IAI.71.3.1217-1224.2003","article-title":"Expression of truncated Internalin A is involved in impaired internalization of some <italic>Listeria monocytogenes<\/italic> isolates carried asymptomatically by humans.","volume":"71","author":"M Olier","year":"2003","journal-title":"Infect Immun"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"2180","DOI":"10.1128\/AEM.70.4.2180-2185.2004","article-title":"Use of PCR-restriction fragment length polymorphism of inlA for rapid screening of <italic>Listeria monocytogenes<\/italic> strains deficient in the ability to invade Caco-2 cells.","volume":"70","author":"S Rousseaux","year":"2004","journal-title":"Appl Environ Microbiol"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"5270","DOI":"10.1128\/JCM.42.11.5270-5276.2004","article-title":"Selective discrimination of <italic>Listeria monocytogenes<\/italic> epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing.","volume":"42","author":"MK Borucki","year":"2004","journal-title":"J Clin Microbiol"},{"key":"ref66","doi-asserted-by":"crossref","first-page":"2193","DOI":"10.1128\/AEM.70.4.2193-2203.2004","article-title":"Multilocus sequence typing of <italic>Listeria monocytogenes<\/italic> by use of hypervariable genes reveals clonal and recombination histories of three lineages.","volume":"70","author":"RJ Meinersmann","year":"2004","journal-title":"Appl Environ Microbiol"},{"key":"ref67","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1128\/JCM.42.1.276-285.2004","article-title":"Comparative analysis of multilocus sequence typing and pulsed-field gel electrophoresis for characterizing <italic>Listeria monocytogenes<\/italic> strains isolated from environmental and clinical sources.","volume":"42","author":"T Revazishvili","year":"2004","journal-title":"J Clin Microbiol"},{"key":"ref68","first-page":"1235","article-title":"Genus <italic>Listeria<\/italic>. Bergey&apos;s Manual of Systematic Bacteriology","author":"HPR Seeliger","year":"1986"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"360","DOI":"10.1016\/S0723-2020(84)80038-7","article-title":"The biochemistry of murein and cell wall teichoic acids in the genus <italic>Listeria<\/italic>.","volume":"5","author":"F Fiedler","year":"1984","journal-title":"Syst Appl Microbiol"},{"key":"ref70","first-page":"2593","article-title":"Physical and antigenic heterogeneity in the flagellins of <italic>Listeria monocytogenes<\/italic> and <italic>L. ivanovii<\/italic>.","volume":"134","author":"M Peel","year":"1988","journal-title":"J Gen Microbiol"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1007\/BF01572609","article-title":"DNA relatedness among serovars of <italic>Listeria monocytogenes<\/italic> sensu lato.","volume":"7","author":"J Rocourt","year":"1982","journal-title":"Curr Microbiol"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"1145","DOI":"10.1099\/00207713-47-4-1145","article-title":"Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data.","volume":"47","author":"T Palys","year":"1997","journal-title":"Int J Syst Bacteriol"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1038\/nrmicro1236","article-title":"Opinion: Re-evaluating prokaryotic species.","volume":"3","author":"D Gevers","year":"2005","journal-title":"Nat Rev Microbiol"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"1917","DOI":"10.1098\/rstb.2006.1917","article-title":"Sequences, sequence clusters and bacterial species.","volume":"361","author":"WP Hanage","year":"2006","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"2045","DOI":"10.1098\/rstb.2006.1925","article-title":"Mismatch induced speciation in <italic>Salmonella<\/italic>: model and data.","volume":"361","author":"D Falush","year":"2006","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"key":"ref76","doi-asserted-by":"crossref","first-page":"4384","DOI":"10.1073\/pnas.90.10.4384","article-title":"How clonal are bacteria?","volume":"90","author":"JM Smith","year":"1993","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1016\/j.meegid.2005.02.003","article-title":"Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data.","volume":"6","author":"M Perez-Losada","year":"2006","journal-title":"Infect Genet Evol"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"7257","DOI":"10.1128\/jb.173.22.7257-7268.1991","article-title":"Recombination in <italic>Escherichia coli<\/italic> and the definition of biological species.","volume":"173","author":"DE Dykhuizen","year":"1991","journal-title":"J Bacteriol"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"12619","DOI":"10.1073\/pnas.95.21.12619","article-title":"Free recombination within <italic>Helicobacter pylori<\/italic>.","volume":"95","author":"S Suerbaum","year":"1998","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1111\/j.1365-2958.2006.05172.x","article-title":"Sex and virulence in <italic>Escherichia coli<\/italic>: an evolutionary perspective.","volume":"60","author":"T Wirth","year":"2006","journal-title":"Mol Microbiol"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"3307","DOI":"10.1128\/JB.185.11.3307-3316.2003","article-title":"How clonal is <italic>Staphylococcus aureus<\/italic>?","volume":"185","author":"EJ Feil","year":"2003","journal-title":"J Bacteriol"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"962","DOI":"10.1093\/nar\/gkl1096","article-title":"Identification of new noncoding RNAs in 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