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Yoon","year":"2011","journal-title":"Faseb Journal"},{"key":"ref93","doi-asserted-by":"crossref","first-page":"e1002568","DOI":"10.1371\/journal.pgen.1002568","article-title":"Neurobeachin, a regulator of synaptic protein targeting, is associated with body fat mass and feeding behavior in mice and body-mass index in humans","volume":"8","author":"PK Olszewski","year":"2012","journal-title":"PLoS Genet"},{"key":"ref94","doi-asserted-by":"crossref","first-page":"5369","DOI":"10.4049\/jimmunol.0803384","article-title":"FAN stimulates TNF(alpha)-induced gene expression, leukocyte recruitment, and humoral response","volume":"183","author":"A Montfort","year":"2009","journal-title":"J Immunol"},{"key":"ref95","first-page":"87","article-title":"Arabidopsis thaliana floral dip transformation method","volume":"343","author":"A Bent","year":"2006","journal-title":"Methods Mol Biol"},{"key":"ref96","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1104\/pp.113.234641","article-title":"What Is Stress? Dose-Response Effects in Commonly Used in Vitro Stress Assays","volume":"165","author":"H Claeys","year":"2014","journal-title":"Plant Physiol"},{"key":"ref97","doi-asserted-by":"crossref","first-page":"3819","DOI":"10.1093\/jxb\/erp221","article-title":"RACK1 is a negative regulator of ABA responses in Arabidopsis","volume":"60","author":"J Guo","year":"2009","journal-title":"J Exp Bot"},{"key":"ref98","doi-asserted-by":"crossref","first-page":"e36","DOI":"10.1093\/nar\/gni035","article-title":"Simple and highly efficient BAC recombineering using galK selection","volume":"33","author":"S Warming","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"ref99","doi-asserted-by":"crossref","first-page":"3308","DOI":"10.1038\/sj.emboj.7601778","article-title":"PtdIns(4,5)P-restricted plasma membrane localization of FAN is involved in TNF-induced actin reorganization","volume":"26","author":"D Haubert","year":"2007","journal-title":"EMBO J"},{"key":"ref100","doi-asserted-by":"crossref","first-page":"2601","DOI":"10.1105\/tpc.105.033910","article-title":"Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity","volume":"17","author":"BJ Feys","year":"2005","journal-title":"Plant Cell"},{"key":"ref101","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1002\/yea.320110408","article-title":"Studies on the transformation of intact yeast cells by the LiAc\/SS-DNA\/PEG procedure","volume":"11","author":"RD Gietz","year":"1995","journal-title":"Yeast"},{"key":"ref102","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1046\/j.1365-313x.2000.00760.x","article-title":"In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves","volume":"22","author":"Y Yang","year":"2000","journal-title":"The Plant journal: for cell and molecular biology"},{"key":"ref103","doi-asserted-by":"crossref","first-page":"3137","DOI":"10.1242\/dev.00549","article-title":"Arabidopsis CROOKED encodes for the smallest subunit of the ARP2\/3 complex and controls cell shape by region specific fine F-actin formation","volume":"130","author":"J Mathur","year":"2003","journal-title":"Development"},{"key":"ref104","doi-asserted-by":"crossref","first-page":"9628","DOI":"10.3390\/ijms15069628","article-title":"A cautionary note on the use of split-YFP\/BiFC in plant protein-protein interaction studies","volume":"15","author":"A Horstman","journal-title":"Int J Mol Sci"},{"key":"ref105","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1002\/cyto.a.20489","article-title":"Two-sided fluorescence resonance energy transfer for assessing molecular interactions of up to three distinct species in confocal microscopy","volume":"73","author":"Z Fazekas","year":"2008","journal-title":"Cytometry A"},{"key":"ref106","doi-asserted-by":"crossref","first-page":"1230","DOI":"10.1105\/tpc.112.096149","article-title":"Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis","volume":"24","author":"H Zhang","year":"2012","journal-title":"Plant Cell"},{"key":"ref107","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"edgeR: a Bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"MD Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"ref108","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1111\/j.1365-3040.2009.01978.x","article-title":"A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize","volume":"32","author":"B Usadel","year":"2009","journal-title":"Plant Cell and 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