{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,24]],"date-time":"2026-06-24T06:52:49Z","timestamp":1782283969655,"version":"3.54.5"},"reference-count":13,"publisher":"Public Library of Science (PLoS)","issue":"7","license":[{"start":{"date-parts":[[2023,7,31]],"date-time":"2023-07-31T00:00:00Z","timestamp":1690761600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-10-INBS-0004"],"award-info":[{"award-number":["ANR-10-INBS-0004"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-18-CE45-0015"],"award-info":[{"award-number":["ANR-18-CE45-0015"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosbiology.org"],"crossmark-restriction":false},"short-container-title":["PLoS Biol"],"abstract":"<jats:p>In 2018, <jats:italic>PLOS Biology<\/jats:italic> announced CellProfiler 3.0, which has become one of the most used pieces of image analysis software in biology. The rapid adoption of this software speaks to the importance of user experience to disseminate new methods of bioimage informatics.<\/jats:p>","DOI":"10.1371\/journal.pbio.3002213","type":"journal-article","created":{"date-parts":[[2023,7,31]],"date-time":"2023-07-31T17:24:31Z","timestamp":1690824271000},"page":"e3002213","update-policy":"https:\/\/doi.org\/10.1371\/journal.pbio.corrections_policy","source":"Crossref","is-referenced-by-count":4,"title":["Bioimage informatics: Investing in software usability is essential"],"prefix":"10.1371","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4822-165X","authenticated-orcid":true,"given":"Perrine","family":"Paul-Gilloteaux","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2023,7,31]]},"reference":[{"key":"pbio.3002213.ref001","doi-asserted-by":"crossref","first-page":"1827","DOI":"10.1093\/bioinformatics\/btn346","article-title":"Bioimage informatics: a new area of engineering biology","volume":"24","author":"H. Peng","year":"2008","journal-title":"Bioinformatics"},{"key":"pbio.3002213.ref002","doi-asserted-by":"crossref","first-page":"629","DOI":"10.1038\/nmeth.2088","article-title":"Murphy.","volume":"9","author":"M. Baker","year":"2012","journal-title":"Nat Methods."},{"key":"pbio.3002213.ref003","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1126\/science.1082602","article-title":"Informatics and Quantitative Analysis in Biological Imaging","volume":"300","author":"JR Swedlow","year":"2003","journal-title":"Science"},{"key":"pbio.3002213.ref004","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1038\/nmeth.2024","article-title":"Why bioimage informatics matters.","volume":"9","author":"G. Myers","year":"2012","journal-title":"Nat Methods"},{"key":"pbio.3002213.ref005","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1038\/nmeth.2084","article-title":"Biological imaging software tools.","volume":"9","author":"KW Eliceiri","year":"2012","journal-title":"Nat Methods"},{"key":"pbio.3002213.ref006","doi-asserted-by":"crossref","first-page":"R100","DOI":"10.1186\/gb-2006-7-10-r100","article-title":"CellProfiler: image analysis software for identifying and quantifying cell phenotypes","volume":"7","author":"AE Carpenter","year":"2006","journal-title":"Genome Biol"},{"issue":"7","key":"pbio.3002213.ref007","doi-asserted-by":"crossref","first-page":"e2005970","DOI":"10.1371\/journal.pbio.2005970","article-title":"CellProfiler 3.0: Next-generation image processing for biology","volume":"16","author":"C McQuin","year":"2018","journal-title":"PLoS Biol"},{"key":"pbio.3002213.ref008","doi-asserted-by":"crossref","first-page":"666","DOI":"10.1038\/nmeth.2073","article-title":"A call for bioimaging software usability.","volume":"9","author":"AE Carpenter","year":"2012","journal-title":"Nat Methods."},{"key":"pbio.3002213.ref009","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1007\/978-3-319-28549-8_9","article-title":"Challenges and Benchmarks in Bioimage Analysis","volume-title":"Focus on Bio-Image Informatics","author":"M. Kozubek","year":"2016"},{"issue":"6","key":"pbio.3002213.ref010","doi-asserted-by":"crossref","first-page":"e3000340","DOI":"10.1371\/journal.pbio.3000340","article-title":"Scientific Community Image Forum: A discussion forum for scientific image software","volume":"17","author":"CT Rueden","year":"2019","journal-title":"PLoS Biol"},{"key":"pbio.3002213.ref011","doi-asserted-by":"crossref","first-page":"1192","DOI":"10.1038\/s41592-021-01262-9","article-title":"DeepImageJ: A user-friendly environment to run deep learning models in ImageJ","volume":"18","author":"E G\u00f3mez-de-Mariscal","year":"2021","journal-title":"Nat Methods"},{"key":"pbio.3002213.ref012","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1038\/s41592-018-0195-8","article-title":"A call for public archives for biological image data.","volume":"15","author":"J Ellenberg","year":"2018","journal-title":"Nat Methods."},{"key":"pbio.3002213.ref013","doi-asserted-by":"crossref","first-page":"320","DOI":"10.12688\/f1000research.52569.1","article-title":"Bioimage analysis workflows: community resources to navigate through a complex ecosystem.","volume":"10","author":"P Paul-Gilloteaux","year":"2021","journal-title":"F1000Res."}],"container-title":["PLOS Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pbio.3002213","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,7,31]],"date-time":"2023-07-31T17:24:41Z","timestamp":1690824281000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pbio.3002213"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,7,31]]},"references-count":13,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2023,7,31]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pbio.3002213","relation":{},"ISSN":["1545-7885"],"issn-type":[{"value":"1545-7885","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,7,31]]}}}