{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T06:49:42Z","timestamp":1790232582550,"version":"4.1.0"},"update-to":[{"DOI":"10.1371\/journal.pbio.3002840","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2024,10,24]],"date-time":"2024-10-24T00:00:00Z","timestamp":1729728000000}}],"reference-count":79,"publisher":"Public Library of Science (PLoS)","issue":"10","license":[{"start":{"date-parts":[[2024,10,14]],"date-time":"2024-10-14T00:00:00Z","timestamp":1728864000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R01GM084376"],"award-info":[{"award-number":["R01GM084376"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosbiology.org"],"crossmark-restriction":false},"short-container-title":["PLoS Biol"],"abstract":"<jats:p>\n                    The translational repressor Nanos (Nos) regulates a single target, maternal\n                    <jats:italic>hunchback<\/jats:italic>\n                    (\n                    <jats:italic>hb)<\/jats:italic>\n                    mRNA, to govern abdominal segmentation in the early\n                    <jats:italic>Drosophila<\/jats:italic>\n                    embryo. Nos is recruited to sites in the 3\u2032 UTR of\n                    <jats:italic>hb<\/jats:italic>\n                    mRNA in collaboration with the sequence-specific RNA-binding protein Pumilio (Pum); on its own, Nos has no binding specificity. Nos is expressed at other stages of development, but very few mRNA targets that might mediate its action at these stages have been described. Nor has it been clear whether Nos is targeted to other mRNAs in concert with Pum or via other mechanisms. In this report, we identify mRNAs targeted by Nos via 2 approaches. First, we identify mRNAs depleted upon expression of a chimera bearing Nos fused to the nonsense mediated decay (NMD) factor Upf1. We find that, in addition to\n                    <jats:italic>hb<\/jats:italic>\n                    , Upf1-Nos depletes approximately 2,600 mRNAs from the maternal transcriptome in early embryos. Virtually all of these appear to be targeted in a canonical,\n                    <jats:italic>hb<\/jats:italic>\n                    -like manner in concert with Pum. In a second, more conventional approach, we identify mRNAs that are stabilized during the maternal zygotic transition (MZT) in embryos from\n                    <jats:italic>nos<\/jats:italic>\n                    <jats:sup>-<\/jats:sup>\n                    females. Most (86%) of the 1,185 mRNAs regulated by Nos are also targeted by Upf1-Nos, validating use of the chimera. Previous work has shown that 60% of the maternal transcriptome is degraded in early embryos. We find that maternal mRNAs targeted by Upf1-Nos are hypoadenylated and inefficiently translated at the ovary\u2013embryo transition; they are subsequently degraded in the early embryo, accounting for 59% of all destabilized maternal mRNAs. We suggest that the late ovarian burst of Nos represses a large fraction of the maternal transcriptome, priming it for later degradation by other factors in the embryo.\n                  <\/jats:p>","DOI":"10.1371\/journal.pbio.3002840","type":"journal-article","created":{"date-parts":[[2024,10,14]],"date-time":"2024-10-14T13:34:37Z","timestamp":1728912877000},"page":"e3002840","update-policy":"https:\/\/doi.org\/10.1371\/journal.pbio.corrections_policy","source":"Crossref","is-referenced-by-count":6,"title":["Widespread regulation of the maternal transcriptome by Nanos in Drosophila"],"prefix":"10.1371","volume":"22","author":[{"given":"Mohammad","family":"Marhabaie","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tammy H.","family":"Wharton","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sung 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Ph.D."},{"key":"pbio.3002840.ref049","doi-asserted-by":"crossref","first-page":"5225","DOI":"10.1242\/dev.127.23.5225","article-title":"Nanos interacts with cup in the female germline of Drosophila","volume":"127","author":"AC Verrotti","year":"2000","journal-title":"Development (Cambridge, England)."},{"key":"pbio.3002840.ref050","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1016\/j.devcel.2006.10.005","article-title":"SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase","volume":"12","author":"W Tadros","year":"2007","journal-title":"Dev Cell"},{"key":"pbio.3002840.ref051","doi-asserted-by":"crossref","first-page":"e16955","DOI":"10.7554\/eLife.16955","article-title":"mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.","volume":"5","author":"SW Eichhorn","year":"2016","journal-title":"eLife."},{"key":"pbio.3002840.ref052","doi-asserted-by":"crossref","first-page":"1219","DOI":"10.1002\/j.1460-2075.1993.tb05763.x","article-title":"Discrete sequence elements control posterior pole accumulation and translational repression of maternal cyclin B RNA in Drosophila","volume":"12","author":"B Dalby","year":"1993","journal-title":"EMBO J"},{"key":"pbio.3002840.ref053","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1038\/332281a0","article-title":"Regulation of the Drosophila segmentation gene hunchback by two maternal morphogenetic centres","volume":"332","author":"D. 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Res"},{"key":"pbio.3002840.ref060","doi-asserted-by":"crossref","first-page":"7067","DOI":"10.1093\/nar\/gkac500","article-title":"The Drosophila hnRNP F\/H homolog Glorund recruits dFMRP to inhibit nanos translation elongation","volume":"50","author":"Y Peng","year":"2022","journal-title":"Nucleic Acids Res"},{"key":"pbio.3002840.ref061","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1242\/dev.125.4.679","article-title":"Nanos and Pumilio have critical roles in the development and function of Drosophila germline stem cells","volume":"125","author":"A Forbes","year":"1998","journal-title":"Development (Cambridge, England)."},{"issue":"29","key":"pbio.3002840.ref062","first-page":"196","article-title":"The arrest gene is required for germline cyst formation during Drosophila oogenesis","volume":"2001","author":"MJ Parisi","year":"2000","journal-title":"Genes N Y 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