{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,12]],"date-time":"2026-10-12T19:51:47Z","timestamp":1791834707328,"version":"4.3.4"},"update-to":[{"DOI":"10.1371\/journal.pcbi.1013524","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T00:00:00Z","timestamp":1759190400000}}],"reference-count":67,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2025,9,24]],"date-time":"2025-09-24T00:00:00Z","timestamp":1758672000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000266","name":"Engineering and Physical Sciences Research Council","doi-asserted-by":"publisher","award":["EP\/S022244\/1"],"award-info":[{"award-number":["EP\/S022244\/1"]}],"id":[{"id":"10.13039\/501100000266","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>The SARS-CoV-2 (COVID-19) pandemic has had catastrophic effects on public health and economies. Around the world, many countries employed modelling efforts to help guide pharmaceutical and non-pharmaceutical measures designed to reduce the spread of the virus. Modelling efforts for future pandemics could use the theory of early warning signals (EWS), which aims to predict \u2018critical transitions\u2019 in complex dynamical systems. In infectious disease systems, such transitions correspond to (re-)emergence, peaks and troughs in infections which can be indirectly observed through the reported case data. There is increasing evidence that including EWS in modelling can help improve responses to upcoming increases or decreases in case reporting. Here, we present both theoretical and data-driven analyses of the suitability of EWS to predict epidemic transitions in reported case data. We derive analytical statistics for a variety of infectious disease models and show, through stochastic simulations of different modelling scenarios, the applicability of EWS in such contexts. Using the COVID-19 reported case dataset from the United Kingdom, we demonstrate the performance of a range of temporal and spatial statistics to anticipate transitions in the case data. Finally, we also investigate the applicability of using EWS analysis of hospitalisation data to anticipate transitions in the corresponding case data. Together, our findings indicate that EWS analysis could be a vital addition to future modelling analysis for real-world infection data.<\/jats:p>","DOI":"10.1371\/journal.pcbi.1013524","type":"journal-article","created":{"date-parts":[[2025,9,24]],"date-time":"2025-09-24T17:50:09Z","timestamp":1758736209000},"page":"e1013524","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":8,"title":["Identifying COVID-19 peaks using early warning signals"],"prefix":"10.1371","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0009-0000-7973-8072","authenticated-orcid":true,"given":"Joshua","family":"Looker","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8414-7648","authenticated-orcid":true,"given":"Kat S.","family":"Rock","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9788-4858","authenticated-orcid":true,"given":"Louise","family":"Dyson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2025,9,24]]},"reference":[{"issue":"1","key":"pcbi.1013524.ref001","first-page":"157","article-title":"WHO declares COVID-19 a pandemic","volume":"91","author":"D Cucinotta","year":"2020","journal-title":"Acta Biomed."},{"key":"pcbi.1013524.ref002","unstructured":"UKHSA. 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