{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T18:11:18Z","timestamp":1790014278161,"version":"4.0.1"},"reference-count":61,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004571","name":"Minist\u00e8re des Affaires Sociales et de la Sant\u00e9","doi-asserted-by":"publisher","award":["Programme Hospitalier de Recherche Clinique 2012"],"award-info":[{"award-number":["Programme Hospitalier de Recherche Clinique 2012"]}],"id":[{"id":"10.13039\/501100004571","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100012948","name":"Minist\u00e8re de l\u2019Enseignement sup\u00e9rieur, de la Recherche et de l\u2019Innovation","doi-asserted-by":"publisher","award":["LabEx MAbImprove ANR-10-LABX-53-01"],"award-info":[{"award-number":["LabEx MAbImprove ANR-10-LABX-53-01"]}],"id":[{"id":"10.13039\/100012948","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003336","name":"Bulgarian National Science Fund","doi-asserted-by":"publisher","award":["KP-06-KOST\/13"],"award-info":[{"award-number":["KP-06-KOST\/13"]}],"id":[{"id":"10.13039\/501100003336","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000921","name":"European Cooperation in Science and Technology","doi-asserted-by":"publisher","award":["ENOTTA CA21147"],"award-info":[{"award-number":["ENOTTA CA21147"]}],"id":[{"id":"10.13039\/501100000921","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"abstract":"<jats:p>\n                    Axial spondyloarthritis is a chronic inflammatory disease impacting the spine and joints. Tumour necrosis factor inhibitors, like adalimumab, are used to treat severe cases, but up to 25% of patients discontinue due to reduced effectiveness, often from emergence of anti-drug antibodies. Methotrexate, while ineffective alone in treatment, has shown potential in reducing the formation of anti-drug antibodies to the therapeutic compound, but its mechanism of action on the immune response remains unclear. The objective of the study is to develop a mathematical model that describes the impact of methotrexate in reducing the immunogenicity of adalimumab in axial spondyloarthritis. Based on mathematical models established in the literature, we formulate a system of ordinary differential equations to describe the temporal dynamics of the immune cells (T and B lymphocytes), the therapeutic compounds in the study (adalimumab and methotrexate), and TNF\n                    <jats:inline-formula id=\"pcbi.1014740.e001\">\n                      <jats:alternatives>\n                        <jats:graphic xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" id=\"pcbi.1014740.e001g\" mimetype=\"image\" position=\"anchor\" xlink:href=\"info:doi\/10.1371\/journal.pcbi.1014740.e001\" xlink:type=\"simple\"\/>\n                        <mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\" display=\"inline\" id=\"M1\">\n                          <mml:mrow>\n                            <mml:mi>\u03b1<\/mml:mi>\n                          <\/mml:mrow>\n                        <\/mml:math>\n                      <\/jats:alternatives>\n                    <\/jats:inline-formula>\n                    . The data used to calibrate the model are sourced from previously published in vitro experiments and a clinical trial which involved 110 patients who received adalimumab alone or adalimumab in combination with methotrexate, from whom adalimumab concentration, lymphocyte counts, and antibody titres collected along five visits during the course of treatment. A computational model is used to generate virtual patient cohorts reflecting the original data and to simulate immunogenic responses to adalimumab. Simulations across 31 scenarios for the mechanism whereby methotrexate acts on the immune cell subsets, predict that methotrexate likely reduces immunogenicity by increasing apoptosis of activated T cells.\n                  <\/jats:p>","DOI":"10.1371\/journal.pcbi.1014740","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T17:48:55Z","timestamp":1790012935000},"page":"e1014740","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":0,"title":["Methotrexate\u2019s effect on cells and adalimumab immunogenicity in axial spondyloarthritis: A mathematical study"],"prefix":"10.1371","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7810-2099","authenticated-orcid":true,"given":"Sara","family":"Sottile","sequence":"first","affiliation":[{"name":"Universit\u00e0 di Bologna","place":["Bologna, Italy"],"department":["Department of Medical and Surgical Sciences"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Conception","family":"Paul","sequence":"additional","affiliation":[{"name":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier","place":["Montpellier, France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rachel","family":"Audo","sequence":"additional","affiliation":[{"name":"Universit\u00e9 de Montpellier, CNRS, INSERM","place":["Montpellier, France"],"department":["PhyMedExp"]},{"name":"Universit\u00e9 de Montpellier","place":["Montpellier, France"],"department":["Department of Rheumatology, H\u00f4pital Arnaud de Villeneuve, Centre Hospitalier Universitaire de Montpellier"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Theo","family":"Rispens","sequence":"additional","affiliation":[{"name":"Sanquin Research","place":["Amsterdam, The Netherlands"],"department":["Department of Immunopathology"]},{"name":"University of Amsterdam","place":["Amsterdam, The Netherlands"],"department":["Landsteiner Laboratory, Amsterdam UMC"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4089-7513","authenticated-orcid":true,"given":"Denis","family":"Mulleman","sequence":"additional","affiliation":[{"name":"UPR CNRS 4301, Universit\u00e9 de Tours","place":["Tours, France"],"department":["Nanomedicines and Nanoprobes Department, Center for Molecular Biophysics"]},{"name":"Centre Hospitalier R\u00e9gional Universitaire de Tours","place":["Tours, France"],"department":["Service de Rhumatologie"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4093-7837","authenticated-orcid":true,"given":"Peter","family":"Rashkov","sequence":"additional","affiliation":[{"name":"Bulgarian Academy of Sciences","place":["Sofia, Bulgaria"],"department":["Institute of Mathematics and Informatics"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2026,9,21]]},"reference":[{"issue":"10089","key":"pcbi.1014740.ref001","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1016\/S0140-6736(16)31591-4","article-title":"Axial spondyloarthritis","volume":"390","author":"J Sieper","year":"2017","journal-title":"Lancet"},{"key":"pcbi.1014740.ref002","doi-asserted-by":"crossref","first-page":"15013","DOI":"10.1038\/nrdp.2015.13","article-title":"Axial spondyloarthritis","volume":"1","author":"J Sieper","year":"2015","journal-title":"Nat Rev Dis Primers"},{"issue":"12","key":"pcbi.1014740.ref003","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1038\/s41584-019-0294-7","article-title":"The IL-23-IL-17 pathway as a therapeutic target in axial spondyloarthritis","volume":"15","author":"J Sieper","year":"2019","journal-title":"Nat Rev Rheumatol"},{"key":"pcbi.1014740.ref004","doi-asserted-by":"crossref","first-page":"312","DOI":"10.3389\/fimmu.2020.00312","article-title":"Immunogenicity of TNF-Inhibitors","volume":"11","author":"S Atiqi","year":"2020","journal-title":"Front Immunol"},{"issue":"3","key":"pcbi.1014740.ref005","doi-asserted-by":"crossref","DOI":"10.1186\/ar3386","article-title":"Antibodies toward infliximab are associated with low infliximab concentration at treatment initiation and poor infliximab maintenance in rheumatic diseases","volume":"13","author":"E Ducourau","year":"2011","journal-title":"Arthritis Res Ther"},{"key":"pcbi.1014740.ref006","doi-asserted-by":"crossref","first-page":"382","DOI":"10.3389\/fimmu.2019.00382","article-title":"Anti-TNF Therapy in Spondyloarthritis and Related Diseases, Impact on the Immune System and Prediction of Treatment Responses","volume":"10","author":"S Menegatti","year":"2019","journal-title":"Front Immunol"},{"issue":"14","key":"pcbi.1014740.ref007","doi-asserted-by":"crossref","first-page":"1460","DOI":"10.1001\/jama.2011.406","article-title":"Development of antidrug antibodies against adalimumab and association with disease activity and treatment failure during long-term follow-up","volume":"305","author":"GM Bartelds","year":"2011","journal-title":"JAMA"},{"issue":"11","key":"pcbi.1014740.ref008","doi-asserted-by":"crossref","first-page":"1787","DOI":"10.1136\/ard.2009.109702","article-title":"Decreased clinical response to adalimumab in ankylosing spondylitis is associated with antibody formation","volume":"68","author":"MK de Vries","year":"2009","journal-title":"Ann Rheum Dis"},{"issue":"1","key":"pcbi.1014740.ref009","doi-asserted-by":"crossref","DOI":"10.1136\/rmdopen-2019-001047","article-title":"Methotrexate effect on immunogenicity and long-term maintenance of adalimumab in axial spondyloarthritis: a multicentric randomised trial","volume":"6","author":"E Ducourau","year":"2020","journal-title":"RMD Open"},{"issue":"8","key":"pcbi.1014740.ref010","doi-asserted-by":"crossref","first-page":"729","DOI":"10.1136\/ard.60.8.729","article-title":"Anti-inflammatory mechanisms of methotrexate in rheumatoid arthritis","volume":"60","author":"M Cutolo","year":"2001","journal-title":"Ann Rheum Dis"},{"issue":"10","key":"pcbi.1014740.ref011","doi-asserted-by":"crossref","first-page":"1463","DOI":"10.1136\/annrheumdis-2018-213403","article-title":"Methotrexate and BAFF interaction prevents immunization against TNF inhibitors","volume":"77","author":"S Bitoun","year":"2018","journal-title":"Ann Rheum Dis"},{"key":"pcbi.1014740.ref012","volume-title":"Impact of methotrexate on immune response [Masters Thesis]","author":"HJ Jeong","year":"2025"},{"issue":"11","key":"pcbi.1014740.ref013","doi-asserted-by":"crossref","first-page":"1914","DOI":"10.1136\/annrheumdis-2012-201544","article-title":"Methotrexate reduces immunogenicity in adalimumab treated rheumatoid arthritis patients in a dose dependent manner","volume":"71","author":"CL Krieckaert","year":"2012","journal-title":"Ann Rheum Dis"},{"issue":"9","key":"pcbi.1014740.ref014","first-page":"1","article-title":"A Mechanistic, Multiscale Mathematical Model of Immunogenicity for Therapeutic Proteins: Part 1\u2014Theoretical Model","volume":"3","author":"X Chen","year":"2014","journal-title":"CPT Pharmacom & Syst Pharma"},{"issue":"14","key":"pcbi.1014740.ref015","doi-asserted-by":"crossref","first-page":"7151","DOI":"10.1128\/JVI.00098-09","article-title":"Simulation and prediction of the adaptive immune response to influenza A virus infection","volume":"83","author":"HY Lee","year":"2009","journal-title":"J Virol"},{"key":"pcbi.1014740.ref016","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/j.jtbi.2018.10.039","article-title":"Rheumatoid arthritis - a mathematical model","volume":"461","author":"N Moise","year":"2019","journal-title":"J Theor Biol"},{"issue":"10","key":"pcbi.1014740.ref017","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.4155\/bio.15.30","article-title":"Development and validation of an enzyme-linked immunosorbent assay to measure adalimumab concentration","volume":"7","author":"C Desvignes","year":"2015","journal-title":"Bioanalysis"},{"issue":"8","key":"pcbi.1014740.ref018","doi-asserted-by":"crossref","first-page":"1250","DOI":"10.1038\/ajg.2014.146","article-title":"Development of an algorithm incorporating pharmacokinetics of adalimumab in inflammatory bowel diseases","volume":"109","author":"X Roblin","year":"2014","journal-title":"Am J Gastroenterol"},{"issue":"3","key":"pcbi.1014740.ref019","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1002\/path.1044","article-title":"Macrophages expressing the scavenger receptor CD163: a link between immune alterations of the gut and synovial inflammation in spondyloarthropathy","volume":"196","author":"D Baeten","year":"2002","journal-title":"J Pathol"},{"issue":"10","key":"pcbi.1014740.ref020","doi-asserted-by":"crossref","first-page":"763","DOI":"10.1038\/nrd3794","article-title":"Targeting IL-17 and TH17 cells in chronic inflammation","volume":"11","author":"P Miossec","year":"2012","journal-title":"Nat Rev Drug Discov"},{"issue":"5","key":"pcbi.1014740.ref021","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1016\/S1297-319X(02)00431-1","article-title":"Serum levels of IL-1 beta, TNF-alpha, IL-8, and acute phase proteins in seronegative spondyloarthropathies","volume":"69","author":"B Sonel","year":"2002","journal-title":"Joint Bone Spine"},{"issue":"4","key":"pcbi.1014740.ref022","doi-asserted-by":"crossref","first-page":"433","DOI":"10.5114\/ceji.2019.92805","article-title":"Biological and genetic evaluation of IL-23\/IL-17 pathway in ankylosing spondylitis patients","volume":"44","author":"H Deveci","year":"2019","journal-title":"Cent Eur J Immunol"},{"issue":"10","key":"pcbi.1014740.ref023","doi-asserted-by":"crossref","first-page":"4914","DOI":"10.4049\/jimmunol.1302929","article-title":"Dendritic cell maturation and survival are differentially regulated by TNFR1 and TNFR2","volume":"193","author":"NJ Maney","year":"2014","journal-title":"J Immunol"},{"issue":"3","key":"pcbi.1014740.ref024","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1016\/S0092-8674(01)00449-4","article-title":"Dendritic cells: specialized and regulated antigen processing machines","volume":"106","author":"I Mellman","year":"2001","journal-title":"Cell"},{"issue":"3","key":"pcbi.1014740.ref025","doi-asserted-by":"crossref","first-page":"515","DOI":"10.3390\/cells11030515","article-title":"Monocytes and Macrophages in Spondyloarthritis: Functional Roles and Effects of Current Therapies","volume":"11","author":"S Mart\u00ednez-Ramos","year":"2022","journal-title":"Cells"},{"issue":"6","key":"pcbi.1014740.ref026","doi-asserted-by":"crossref","first-page":"728","DOI":"10.1136\/ard.2005.045641","article-title":"Anti-inflammatory effects of leflunomide in combination with methotrexate on co-culture of T lymphocytes and synovial macrophages from rheumatoid arthritis patients","volume":"65","author":"M Cutolo","year":"2006","journal-title":"Ann Rheum Dis"},{"issue":"11","key":"pcbi.1014740.ref027","doi-asserted-by":"crossref","first-page":"2032","DOI":"10.1002\/1529-0131(199811)41:11<2032::AID-ART19>3.0.CO;2-J","article-title":"Effects of methotrexate on differentiation of monocytes and production of cytokine inhibitors by monocytes","volume":"41","author":"M Seitz","year":"1998","journal-title":"Arthritis Rheum"},{"issue":"5","key":"pcbi.1014740.ref028","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1002\/eji.1830270526","article-title":"Effect of interleukin-10 on dendritic cell maturation and function","volume":"27","author":"T De Smedt","year":"1997","journal-title":"Eur J Immunol"},{"issue":"2","key":"pcbi.1014740.ref029","doi-asserted-by":"crossref","first-page":"2659","DOI":"10.18632\/oncotarget.13736","article-title":"IL-10 expression defines an immunosuppressive dendritic cell population induced by antitumor therapeutic vaccination","volume":"8","author":"D Llopiz","year":"2017","journal-title":"Oncotarget"},{"issue":"4","key":"pcbi.1014740.ref030","doi-asserted-by":"crossref","first-page":"1395","DOI":"10.4049\/jimmunol.1401329","article-title":"B10 cells: a functionally defined regulatory B cell subset","volume":"194","author":"TF Tedder","year":"2015","journal-title":"J Immunol"},{"key":"pcbi.1014740.ref031","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.cyto.2016.08.003","article-title":"TNF activity and T cells","volume":"101","author":"AK Mehta","year":"2018","journal-title":"Cytokine"},{"issue":"8","key":"pcbi.1014740.ref032","doi-asserted-by":"crossref","first-page":"989","DOI":"10.1093\/ecco-jcc\/jjw053","article-title":"Mechanism of Action of Anti-TNF Therapy in Inflammatory Bowel Disease","volume":"10","author":"AD Levin","year":"2016","journal-title":"J Crohns Colitis"},{"issue":"1","key":"pcbi.1014740.ref033","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1111\/cts.12850","article-title":"A Dynamic Quantitative Systems Pharmacology Model of Inflammatory Bowel Disease: Part 2 - Application to Current Therapies in Crohn\u2019s Disease","volume":"14","author":"KV Rogers","year":"2021","journal-title":"Clin Transl Sci"},{"issue":"9","key":"pcbi.1014740.ref034","doi-asserted-by":"crossref","first-page":"5771","DOI":"10.4049\/jimmunol.180.9.5771","article-title":"IL-10: the master regulator of immunity to infection","volume":"180","author":"KN Couper","year":"2008","journal-title":"J Immunol"},{"issue":"11","key":"pcbi.1014740.ref035","doi-asserted-by":"crossref","first-page":"2964","DOI":"10.1182\/blood.V81.11.2964.2964","article-title":"Human interleukin-10 can directly inhibit T-cell growth","volume":"81","author":"K Taga","year":"1993","journal-title":"Blood"},{"issue":"2","key":"pcbi.1014740.ref036","doi-asserted-by":"crossref","first-page":"322","DOI":"10.1172\/JCI2676","article-title":"Immunosuppressive properties of methotrexate: apoptosis and clonal deletion of activated peripheral T cells","volume":"102","author":"L Genestier","year":"1998","journal-title":"J Clin Invest"},{"issue":"5","key":"pcbi.1014740.ref037","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1038\/ni1582","article-title":"Functions of natural killer cells","volume":"9","author":"E Vivier","year":"2008","journal-title":"Nat Immunol"},{"key":"pcbi.1014740.ref038","doi-asserted-by":"crossref","first-page":"622306","DOI":"10.3389\/fimmu.2021.622306","article-title":"The Role of Natural Killer Cells in Autoimmune Diseases","volume":"12","author":"UC Kucuksezer","year":"2021","journal-title":"Front Immunol"},{"issue":"1","key":"pcbi.1014740.ref039","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/s12865-023-00575-y","article-title":"The upregulation of peripheral CD3-CD56+CD16+ natural killer cells correlates with Th1\/Th2 imbalance in asthma patients during acute upper respiratory viral infections","volume":"24","author":"M Liu","year":"2023","journal-title":"BMC Immunol"},{"issue":"10","key":"pcbi.1014740.ref040","doi-asserted-by":"crossref","first-page":"1140","DOI":"10.1038\/s41423-023-01071-4","article-title":"The TNF\u03b1\/TNFR2 axis mediates natural killer cell proliferation by promoting aerobic glycolysis","volume":"20","author":"AUH Khan","year":"2023","journal-title":"Cell Mol Immunol"},{"issue":"7","key":"pcbi.1014740.ref041","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1016\/0192-0561(87)90075-0","article-title":"Comparative effects on the immune system of methotrexate and trimetrexate","volume":"9","author":"GJ Rosenthal","year":"1987","journal-title":"Int J Immunopharmacol"},{"key":"pcbi.1014740.ref042","doi-asserted-by":"crossref","DOI":"10.1093\/rheumatology\/keaf142.337","article-title":"E102\u2003Transcriptomic effects of methotrexate on natural killer cells in psoriatic arthritis","volume":"64","author":"LJ Tucker","year":"2025","journal-title":"Rheumatology"},{"key":"pcbi.1014740.ref043","article-title":"Peripheral blood and synovial fluid natural killer (NK) and natural killer T (NKT) cell immunophenotypes in active rheumatoid arthritis and their role as biomarkers of methotrexate response (abstract)","volume":"74","author":"S Jain","year":"2022","journal-title":"Arthritis Rheum"},{"issue":"2","key":"pcbi.1014740.ref044","doi-asserted-by":"crossref","first-page":"164","DOI":"10.1093\/cei\/uxac114","article-title":"CD27 on human memory B cells-more than just a surface marker","volume":"213","author":"O Grimsholm","year":"2023","journal-title":"Clin Exp Immunol"},{"issue":"9","key":"pcbi.1014740.ref045","doi-asserted-by":"crossref","first-page":"1679","DOI":"10.1084\/jem.188.9.1679","article-title":"Human immunoglobulin (Ig)M+IgD+ peripheral blood B cells expressing the CD27 cell surface antigen carry somatically mutated variable region genes: CD27 as a general marker for somatically mutated (memory) B cells","volume":"188","author":"U Klein","year":"1998","journal-title":"J Exp Med"},{"key":"pcbi.1014740.ref046","article-title":"IL-10-producing regulatory B cells (B10 cells) in autoimmune disease","author":"I Kalampokis","year":"2013","journal-title":"Arthritis Res Ther"},{"issue":"1","key":"pcbi.1014740.ref047","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1002\/1529-0131(199801)41:1<48::AID-ART7>3.0.CO;2-K","article-title":"Antiinflammatory and immunoregulatory action of methotrexate in the treatment of rheumatoid arthritis: evidence of increased interleukin-4 and interleukin-10 gene expression demonstrated in vitro by competitive reverse transcriptase-polymerase chain reaction","volume":"41","author":"A Constantin","year":"1998","journal-title":"Arthritis Rheum"},{"issue":"8","key":"pcbi.1014740.ref048","doi-asserted-by":"crossref","first-page":"3947","DOI":"10.4049\/jimmunol.1303326","article-title":"Transient low-dose methotrexate generates B regulatory cells that mediate antigen-specific tolerance to alglucosidase alfa","volume":"193","author":"MS Joly","year":"2014","journal-title":"J Immunol"},{"issue":"8","key":"pcbi.1014740.ref049","doi-asserted-by":"crossref","first-page":"2037","DOI":"10.1002\/art.38666","article-title":"Regulatory B10 cells are decreased in patients with rheumatoid arthritis and are inversely correlated with disease activity","volume":"66","author":"CI Daien","year":"2014","journal-title":"Arthritis Rheumatol"},{"issue":"4","key":"pcbi.1014740.ref050","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1029\/2000WR900350","article-title":"Practical identifiability analysis of large environmental simulation models","volume":"37","author":"R Brun","year":"2001","journal-title":"Water Resources Research"},{"issue":"3","key":"pcbi.1014740.ref051","doi-asserted-by":"crossref","first-page":"1","DOI":"10.18637\/jss.v033.i03","article-title":"Inverse modelling, sensitivity and Monte Carlo analysis in R using package FME","volume":"33","author":"K Soetaert","year":"2010","journal-title":"J Stat Softw"},{"issue":"103","key":"pcbi.1014740.ref052","doi-asserted-by":"crossref","first-page":"20140886","DOI":"10.1098\/rsif.2014.0886","article-title":"Minimal within-host dengue models highlight the specific roles of the immune response in primary and secondary dengue infections","volume":"12","author":"R Ben-Shachar","year":"2015","journal-title":"J R Soc Interface"},{"issue":"12","key":"pcbi.1014740.ref053","doi-asserted-by":"crossref","first-page":"4951","DOI":"10.1007\/s11538-019-00664-3","article-title":"Modelling the Host Immune Response to Mature and Immature Dengue Viruses","volume":"81","author":"M Borisov","year":"2019","journal-title":"Bull Math Biol"},{"issue":"6","key":"pcbi.1014740.ref054","doi-asserted-by":"crossref","first-page":"1700","DOI":"10.1016\/S0149-2918(03)80164-9","article-title":"Efficacy, pharmacokinetic, and safety assessment of adalimumab, a fully human anti-tumor necrosis factor-alpha monoclonal antibody, in adults with rheumatoid arthritis receiving concomitant methotrexate: a pilot study","volume":"25","author":"MH Weisman","year":"2003","journal-title":"Clin Ther"},{"key":"pcbi.1014740.ref055","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1016\/j.cellimm.2008.05.007","article-title":"CD4+CD25high T cell numbers are enriched in the peripheral blood of patients with rheumatoid arthritis","volume":"253","author":"GM Han","year":"2008","journal-title":"Cell Immunol"},{"issue":"26","key":"pcbi.1014740.ref056","doi-asserted-by":"crossref","first-page":"1717","DOI":"10.1056\/NEJM199606273342607","article-title":"The tumor necrosis factor ligand and receptor families","volume":"334","author":"F Bazzoni","year":"1996","journal-title":"N Engl J Med"},{"key":"pcbi.1014740.ref057","doi-asserted-by":"crossref","first-page":"37559","DOI":"10.1038\/srep37559","article-title":"Functional defects in CD4 CD25high FoxP3 regulatory cells in ankylosing spondylitis","volume":"6","author":"H Guo","year":"2016","journal-title":"Sci Rep"},{"issue":"3","key":"pcbi.1014740.ref058","doi-asserted-by":"crossref","first-page":"194","DOI":"10.2165\/00003088-199630030-00002","article-title":"Clinical pharmacokinetics of low-dose pulse methotrexate in rheumatoid arthritis","volume":"30","author":"B Bannwarth","year":"1996","journal-title":"Clin Pharmacokinet"},{"issue":"2","key":"pcbi.1014740.ref059","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1002\/jps.2600780219","article-title":"Pharmacokinetics of low-dose methotrexate in rheumatoid arthritis patients","volume":"78","author":"RA Herman","year":"1989","journal-title":"J Pharm Sci"},{"issue":"5","key":"pcbi.1014740.ref060","doi-asserted-by":"crossref","DOI":"10.1186\/ar2537","article-title":"Serum levels of biomarkers of bone and cartilage destruction and new bone formation in different cohorts of patients with axial spondyloarthritis with and without tumor necrosis factor-alpha blocker treatment","volume":"10","author":"H Appel","year":"2008","journal-title":"Arthritis Res Ther"},{"key":"pcbi.1014740.ref061","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1007\/s10067-010-1528-x","article-title":"Circulating levels of interleukin-6, vascular endothelial growth factor, YKL-40, matrix metalloproteinase-3, and total aggrecan in spondyloarthritis patients during 3 years of treatment with TNF\u03b1 inhibitors","volume":"29","author":"SJ Pedersen","year":"2010","journal-title":"Clin Rheumatol"}],"container-title":["PLOS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1014740","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T17:49:05Z","timestamp":1790012945000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1014740"}},"subtitle":[],"editor":[{"given":"Tyler","family":"Cassidy","sequence":"first","affiliation":[{"name":"The University of British Columbia","place":["CANADA"]}],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2026,9,21]]},"references-count":61,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2026,9,21]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1014740","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,21]]}}}