{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,4]],"date-time":"2025-11-04T23:09:49Z","timestamp":1762297789408},"reference-count":48,"publisher":"Public Library of Science (PLoS)","issue":"12","license":[{"start":{"date-parts":[[2011,12,13]],"date-time":"2011-12-13T00:00:00Z","timestamp":1323734400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosntds.org"],"crossmark-restriction":false},"short-container-title":["PLoS Negl Trop Dis"],"DOI":"10.1371\/journal.pntd.0001419","type":"journal-article","created":{"date-parts":[[2011,12,13]],"date-time":"2011-12-13T21:51:23Z","timestamp":1323813083000},"page":"e1419","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pntd.corrections_policy","source":"Crossref","is-referenced-by-count":44,"title":["In Vivo Expression of Salmonella enterica Serotype Typhi Genes in the Blood of Patients with Typhoid Fever in Bangladesh"],"prefix":"10.1371","volume":"5","author":[{"given":"Alaullah","family":"Sheikh","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richelle C.","family":"Charles","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nusrat","family":"Sharmeen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sean M.","family":"Rollins","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jason B.","family":"Harris","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Md. Saruar","family":"Bhuiyan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mohammad","family":"Arifuzzaman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Farhana","family":"Khanam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Archana","family":"Bukka","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anuj","family":"Kalsy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Steffen","family":"Porwollik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel T.","family":"Leung","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"W. Abdullah","family":"Brooks","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Regina C.","family":"LaRocque","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elizabeth L.","family":"Hohmann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alejandro","family":"Cravioto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tanya","family":"Logvinenko","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephen B.","family":"Calderwood","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"McClelland","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"James E.","family":"Graham","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Firdausi","family":"Qadri","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Edward T.","family":"Ryan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2011,12,13]]},"reference":[{"key":"ref1","first-page":"346","article-title":"The global burden of typhoid fever.","volume":"82","author":"JA Crump","year":"2004","journal-title":"Bull World Health Organ"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"1389","DOI":"10.1111\/j.1462-5822.2010.01511.x","article-title":"Dynamics of growth and dissemination of <italic>Salmonella in vivo<\/italic>.","volume":"12","author":"KG Watson","year":"2010","journal-title":"Cell Microbiol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1016\/j.chom.2010.09.003","article-title":"A mouse model for the human pathogen <italic>Salmonella typhi<\/italic>.","volume":"8","author":"J Song","year":"2010","journal-title":"Cell Host Microbe"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1038\/nrmicro1788","article-title":"<italic>Salmonellae<\/italic> interplay with host cells.","volume":"6","author":"A Haraga","year":"2008","journal-title":"Nat Rev Microbiol"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/35101614","article-title":"Complete genome sequence of <italic>Salmonella enterica<\/italic> serovar Typhimurium LT2.","volume":"413","author":"M McClelland","year":"2001","journal-title":"Nature"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"848","DOI":"10.1038\/35101607","article-title":"Complete genome sequence of a multiple drug resistant <italic>Salmonella enterica<\/italic> serovar Typhi CT18.","volume":"413","author":"J Parkhill","year":"2001","journal-title":"Nature"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1046\/j.1365-2958.2001.02593.x","article-title":"Identification of <italic>Salmonella typhi<\/italic> genes expressed within macrophages by selective capture of transcribed sequences (SCOTS).","volume":"41","author":"F Daigle","year":"2001","journal-title":"Mol Microbiol"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"5217","DOI":"10.1128\/IAI.73.8.5217-5221.2005","article-title":"Selective capture of <italic>Salmonella enterica<\/italic> serovar Typhi genes expressed in macrophages that are absent from the <italic>Salmonella enterica<\/italic> serovar Typhimurium genome.","volume":"73","author":"SP Faucher","year":"2005","journal-title":"Infect Immun"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"1906","DOI":"10.1073\/pnas.0509183103","article-title":"Transcriptome of <italic>Salmonella enterica<\/italic> serovar Typhi within macrophages revealed through the selective capture of transcribed sequences.","volume":"103","author":"SP Faucher","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"11554","DOI":"10.1073\/pnas.96.20.11554","article-title":"Identification of <italic>Mycobacterium tuberculosis<\/italic> RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS).","volume":"96","author":"JE Graham","year":"1999","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1016\/S0076-6879(02)58083-6","article-title":"Microbial gene expression elucidated by selective capture of transcribed sequences (SCOTS).","volume":"358","author":"F Daigle","year":"2002","journal-title":"Methods Enzymol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"e908","DOI":"10.1371\/journal.pntd.0000908","article-title":"Analysis of <italic>Salmonella enterica<\/italic> serotype Paratyphi A gene expression in the blood of bacteremic patients in Bangladesh.","volume":"4","author":"A Sheikh","year":"2010","journal-title":"PLoS Negl Trop Dis"},{"key":"ref13","article-title":"Salmonella.","author":"RA Giannella","year":"1996"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"2900","DOI":"10.1093\/nar\/20.11.2900","article-title":"A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA.","volume":"20","author":"P Froussard","year":"1992","journal-title":"Nucleic Acids Res"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"e1824","DOI":"10.1371\/journal.pone.0001824","article-title":"Application of in vivo induced antigen technology (IVIAT) to <italic>Bacillus anthracis<\/italic>.","volume":"3","author":"SM Rollins","year":"2008","journal-title":"PLoS One"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"e6994","DOI":"10.1371\/journal.pone.0006994","article-title":"Comparative proteomic analysis of the PhoP regulon in <italic>Salmonella enterica<\/italic> serovar Typhi versus Typhimurium.","volume":"4","author":"RC Charles","year":"2009","journal-title":"PLoS One"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1016\/S1369-5274(99)80008-3","article-title":"Interaction of <italic>Salmonella<\/italic> with host cells through the centisome 63 type III secretion system.","volume":"2","author":"JE Galan","year":"1999","journal-title":"Curr Opin Microbiol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"1835","DOI":"10.1128\/JB.183.6.1835-1842.2001","article-title":"The pleiotropic two-component regulatory system PhoP-PhoQ.","volume":"183","author":"EA Groisman","year":"2001","journal-title":"J Bacteriol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1007\/978-0-387-78885-2_2","article-title":"The PhoQ\/PhoP regulatory network of <italic>Salmonella enterica<\/italic>.","volume":"631","author":"A Kato","year":"2008","journal-title":"Adv Exp Med Biol"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1007\/s00239-004-0212-7","article-title":"Comparison of the PhoPQ regulon in <italic>Escherichia coli<\/italic> and <italic>Salmonella typhimurium<\/italic>.","volume":"60","author":"P Monsieurs","year":"2005","journal-title":"J Mol Evol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1111\/j.1365-2958.1996.tb02615.x","article-title":"Molecular genetic bases of <italic>Salmonella<\/italic> entry into host cells.","volume":"20","author":"JE Galan","year":"1996","journal-title":"Mol Microbiol"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1805","DOI":"10.1126\/science.1098188","article-title":"<italic>Salmonella<\/italic> modulates vesicular traffic by altering phosphoinositide metabolism.","volume":"304","author":"LD Hernandez","year":"2004","journal-title":"Science"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"1579","DOI":"10.1111\/j.1462-5822.2009.01368.x","article-title":"<italic>Salmonella<\/italic>\u2013the ultimate insider. Salmonella virulence factors that modulate intracellular survival.","volume":"11","author":"JA Ibarra","year":"2009","journal-title":"Cell Microbiol"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"1221","DOI":"10.1099\/mic.0.2006\/002758-0","article-title":"SipA, SopA, SopB, SopD and SopE2 effector proteins of <italic>Salmonella enterica<\/italic> serovar Typhimurium are synthesized at late stages of infection in mice.","volume":"153","author":"MN Giacomodonato","year":"2007","journal-title":"Microbiology"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"17733","DOI":"10.1073\/pnas.1006098107","article-title":"Dissemination of invasive <italic>Salmonella<\/italic> via bacterial-induced extrusion of mucosal epithelia.","volume":"107","author":"LA Knodler","year":"2010","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"4052","DOI":"10.1128\/AAC.49.10.4052-4060.2005","article-title":"Aptamers that preferentially bind type IVB pili and inhibit human monocytic-cell invasion by <italic>Salmonella enterica<\/italic> serovar Typhi.","volume":"49","author":"Q Pan","year":"2005","journal-title":"Antimicrob Agents Chemother"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"3067","DOI":"10.1128\/IAI.68.6.3067-3073.2000","article-title":"<italic>Salmonella enterica<\/italic> serovar Typhi uses type IVB pili to enter human intestinal epithelial cells.","volume":"68","author":"XL Zhang","year":"2000","journal-title":"Infect Immun"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"5055","DOI":"10.1128\/JB.185.17.5055-5065.2003","article-title":"Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding <italic>Salmonella enterica<\/italic> pathogenicity island SPI-7.","volume":"185","author":"D Pickard","year":"2003","journal-title":"J Bacteriol"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/S0264-410X(88)80017-3","article-title":"Auxotrophic <italic>Salmonella typhi<\/italic> as live vaccine.","volume":"6","author":"BA Stocker","year":"1988","journal-title":"Vaccine"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1016\/0882-4010(87)90071-4","article-title":"Effect of different purine auxotrophic mutations on mouse-virulence of a Vi-positive strain of <italic>Salmonella dublin<\/italic> and of two strains of <italic>Salmonella Typhimurium<\/italic>.","volume":"3","author":"WC McFarland","year":"1987","journal-title":"Microb Pathog"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"5376","DOI":"10.1093\/emboj\/16.17.5376","article-title":"The <italic>Salmonella selC<\/italic> locus contains a pathogenicity island mediating intramacrophage survival.","volume":"16","author":"AB Blanc-Potard","year":"1997","journal-title":"EMBO J"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"6517","DOI":"10.1128\/JB.00772-08","article-title":"The CorA Mg2+ channel is required for the virulence of <italic>Salmonella enterica<\/italic> serovar Typhimurium.","volume":"190","author":"KM Papp-Wallace","year":"2008","journal-title":"J Bacteriol"},{"issue":"Pt 7","key":"ref33","doi-asserted-by":"crossref","first-page":"1835","DOI":"10.1099\/00221287-144-7-1835","article-title":"Magnesium transport in <italic>Salmonella typhimurium<\/italic>: regulation of <italic>mgtA<\/italic> and <italic>mgtCB<\/italic> during invasion of epithelial and macrophage cells.","volume":"144","author":"RL Smith","year":"1998","journal-title":"Microbiology"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"5522","DOI":"10.1128\/IAI.72.9.5522-5525.2004","article-title":"The <italic>Salmonella enterica<\/italic> serovar Typhimurium divalent cation transport systems MntH and SitABCD are essential for virulence in an <italic>Nramp1<\/italic><sup>G169<\/sup> murine typhoid model.","volume":"72","author":"ML Zaharik","year":"2004","journal-title":"Infect Immun"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"1207","DOI":"10.1099\/mic.0.2006\/004747-0","article-title":"Identification of novel genes in genomic islands that contribute to <italic>Salmonella typhimurium<\/italic> replication in macrophages.","volume":"153","author":"J Klumpp","year":"2007","journal-title":"Microbiology"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"1357","DOI":"10.1128\/jb.177.5.1357-1366.1995","article-title":"Ethanolamine utilization in <italic>Salmonella typhimurium<\/italic>: nucleotide sequence, protein expression, and mutational analysis of the <italic>cchA cchB eutE eutJ eutG eutH<\/italic> gene cluster.","volume":"177","author":"I Stojiljkovic","year":"1995","journal-title":"J Bacteriol"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"4641","DOI":"10.1073\/pnas.95.8.4641","article-title":"Differential patterns of acquired virulence genes distinguish <italic>Salmonella<\/italic> strains.","volume":"95","author":"CP Conner","year":"1998","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"6294","DOI":"10.1128\/IAI.72.11.6294-6299.2004","article-title":"Respiratory hydrogen use by <italic>Salmonella enterica<\/italic> serovar Typhimurium is essential for virulence.","volume":"72","author":"RJ Maier","year":"2004","journal-title":"Infect Immun"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"4445","DOI":"10.1128\/IAI.00741-08","article-title":"<italic>Salmonella enterica<\/italic> serovar Typhimurium NiFe uptake-type hydrogenases are differentially expressed <italic>in vivo<\/italic>.","volume":"76","author":"AL Zbell","year":"2008","journal-title":"Infect Immun"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"3784","DOI":"10.1128\/jb.175.12.3784-3789.1993","article-title":"Amplification of the <italic>bacA<\/italic> gene confers bacitracin resistance to <italic>Escherichia coli<\/italic>.","volume":"175","author":"BD Cain","year":"1993","journal-title":"J Bacteriol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1111\/j.1365-2958.2005.04940.x","article-title":"Virulence and drug resistance roles of multidrug efflux systems of <italic>Salmonella enterica<\/italic> serovar Typhimurium.","volume":"59","author":"K Nishino","year":"2006","journal-title":"Mol Microbiol"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"4053","DOI":"10.1002\/j.1460-2075.1993.tb06089.x","article-title":"Molecular genetic analysis of a locus required for resistance to antimicrobial peptides in <italic>Salmonella Typhimurium.<\/italic>.","volume":"12","author":"C Parra-Lopez","year":"1993","journal-title":"EMBO J"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"6139","DOI":"10.1128\/IAI.68.11.6139-6146.2000","article-title":"Genetic and functional analysis of a PmrA-PmrB-regulated locus necessary for lipopolysaccharide modification, antimicrobial peptide resistance, and oral virulence of <italic>Salmonella enterica<\/italic> serovar Typhimurium.","volume":"68","author":"JS Gunn","year":"2000","journal-title":"Infect Immun"},{"issue":"Pt 2","key":"ref44","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1099\/13500872-145-2-367","article-title":"The <italic>Salmonella typhi<\/italic> melittin resistance gene pqaB affects intracellular growth in PMA-differentiated U937 cells, polymyxin B resistance and lipopolysaccharide.","volume":"145","author":"SJ Baker","year":"1999","journal-title":"Microbiology"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1046\/j.1365-2958.2003.03455.x","article-title":"<italic>virK<\/italic>, <italic>somA<\/italic> and <italic>rcsC<\/italic> are important for systemic <italic>Salmonella enterica<\/italic> serovar Typhimurium infection and cationic peptide resistance.","volume":"48","author":"CS Detweiler","year":"2003","journal-title":"Mol Microbiol"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"5140","DOI":"10.1128\/IAI.00449-06","article-title":"Thioredoxin 1 promotes intracellular replication and virulence of <italic>Salmonella enterica<\/italic> serovar Typhimurium.","volume":"74","author":"E Bjur","year":"2006","journal-title":"Infect Immun"},{"issue":"Pt 11","key":"ref47","doi-asserted-by":"crossref","first-page":"3035","DOI":"10.1099\/00221287-145-11-3035","article-title":"The <italic>rpoS<\/italic>-dependent starvation-stress response locus <italic>stiA<\/italic> encodes a nitrate reductase (<italic>narZYWV<\/italic>) required for carbon-starvation-inducible thermotolerance and acid tolerance in <italic>Salmonella typhimurium<\/italic>.","volume":"145","author":"MP Spector","year":"1999","journal-title":"Microbiology"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1111\/j.1365-2958.1993.tb01184.x","article-title":"Recombination-deficient mutants of <italic>Salmonella typhimurium<\/italic> are avirulent and sensitive to the oxidative burst of macrophages.","volume":"7","author":"NA Buchmeier","year":"1993","journal-title":"Mol Microbiol"}],"container-title":["PLoS Neglected Tropical Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pntd.0001419","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,9]],"date-time":"2020-05-09T16:35:49Z","timestamp":1589042149000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pntd.0001419"}},"subtitle":[],"editor":[{"given":"Christian","family":"Johnson","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2011,12,13]]},"references-count":48,"journal-issue":{"issue":"12","published-online":{"date-parts":[[2011,12,13]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pntd.0001419","relation":{},"ISSN":["1935-2735"],"issn-type":[{"value":"1935-2735","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,12,13]]}}}