{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,29]],"date-time":"2025-09-29T00:08:20Z","timestamp":1759104500496},"reference-count":33,"publisher":"Public Library of Science (PLoS)","issue":"1","license":[{"start":{"date-parts":[[2012,1,31]],"date-time":"2012-01-31T00:00:00Z","timestamp":1327968000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosntds.org"],"crossmark-restriction":false},"short-container-title":["PLoS Negl Trop Dis"],"DOI":"10.1371\/journal.pntd.0001490","type":"journal-article","created":{"date-parts":[[2012,1,31]],"date-time":"2012-01-31T22:09:34Z","timestamp":1328047774000},"page":"e1490","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pntd.corrections_policy","source":"Crossref","is-referenced-by-count":17,"title":["High-Resolution Genotyping of the Endemic Salmonella Typhi Population during a Vi (Typhoid) Vaccination Trial in Kolkata"],"prefix":"10.1371","volume":"6","author":[{"given":"Kathryn E.","family":"Holt","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shanta","family":"Dutta","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Byomkesh","family":"Manna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sujit K.","family":"Bhattacharya","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Barnali","family":"Bhaduri","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Derek J.","family":"Pickard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R. Leon","family":"Ochiai","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mohammad","family":"Ali","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"John D.","family":"Clemens","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gordon","family":"Dougan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2012,1,31]]},"reference":[{"key":"ref1","first-page":"346","article-title":"The global burden of typhoid fever.","volume":"82","author":"JA Crump","year":"2004","journal-title":"Bull World Health Organ"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"260","DOI":"10.2471\/BLT.06.039818","article-title":"A study of typhoid fever in five Asian countries: disease burden and implications for controls.","volume":"86","author":"RL Ochiai","year":"2008","journal-title":"Bull World Health Organ"},{"key":"ref3","first-page":"253","article-title":"The burden of enteric fever.","volume":"2","author":"A Kothari","year":"2008","journal-title":"J Infect Dev Ctries"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"1770","DOI":"10.1056\/NEJMra020201","article-title":"Typhoid fever.","volume":"347","author":"CM Parry","year":"2002","journal-title":"N Engl J Med"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"4315","DOI":"10.1128\/AAC.00294-07","article-title":"Antimicrobial drug resistance of Salmonella enterica serovar typhi in asia and molecular mechanism of reduced susceptibility to the fluoroquinolones.","volume":"51","author":"TT Chau","year":"2007","journal-title":"Antimicrob Agents Chemother"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1128\/AAC.01509-07","article-title":"Clinical response and outcome of infection with Salmonella enterica serotype Typhi with decreased susceptibility to fluoroquinolones: a United States foodnet multicenter retrospective cohort study.","volume":"52","author":"JA Crump","year":"2008","journal-title":"Antimicrob Agents Chemother"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"1404","DOI":"10.1086\/516128","article-title":"Quinolone-resistant Salmonella typhi in Viet Nam: molecular basis of resistance and clinical response to treatment.","volume":"25","author":"J Wain","year":"1997","journal-title":"Clin Infect Dis"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1016\/j.trstmh.2005.10.019","article-title":"The malaria and typhoid fever burden in the slums of Kolkata, India: data from a prospective community-based study.","volume":"100","author":"D Sur","year":"2006","journal-title":"Trans R Soc Trop Med Hyg"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"e13988","DOI":"10.1371\/journal.pone.0013988","article-title":"The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu.","volume":"5","author":"A Karkey","year":"2010","journal-title":"PLoS One"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"7848","DOI":"10.1016\/j.vaccine.2007.08.027","article-title":"Typhoid fever vaccines: systematic review and meta-analysis of randomised controlled trials.","volume":"25","author":"A Fraser","year":"2007","journal-title":"Vaccine"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1056\/NEJMoa0807521","article-title":"A cluster-randomized effectiveness trial of Vi typhoid vaccine in India.","volume":"361","author":"D Sur","year":"2009","journal-title":"N Engl J Med"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1111\/j.1708-8305.2008.00273.x","article-title":"Rethinking typhoid fever vaccines: implications for travelers and people living in highly endemic areas.","volume":"16","author":"JA Whitaker","year":"2009","journal-title":"J Travel Med"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"547","DOI":"10.1586\/14760584.7.5.547","article-title":"Typhoid vaccination: the Asian experience.","volume":"7","author":"D DeRoeck","year":"2008","journal-title":"Expert Rev Vaccines"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/S1567-1348(02)00089-8","article-title":"Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old.","volume":"2","author":"C Kidgell","year":"2002","journal-title":"Infect Genet Evol"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"987","DOI":"10.1038\/ng.195","article-title":"High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.","volume":"40","author":"KE Holt","year":"2008","journal-title":"Nat Genet"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1126\/science.1134933","article-title":"Evolutionary history of Salmonella typhi.","volume":"314","author":"P Roumagnac","year":"2006","journal-title":"Science"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1741","DOI":"10.1128\/JCM.02249-07","article-title":"High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia.","volume":"46","author":"S Baker","year":"2008","journal-title":"J Clin Microbiol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1186\/1471-2334-10-144","article-title":"High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children.","volume":"10","author":"KE Holt","year":"2010","journal-title":"BMC Infect Dis"},{"key":"ref19","doi-asserted-by":"crossref","DOI":"10.1098\/rsob.110008","article-title":"Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission.","volume":"1","author":"S Baker","year":"2011","journal-title":"Open Biol"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"e929","DOI":"10.1371\/journal.pntd.0000929","article-title":"Temporal Fluctuation of Multidrug Resistant Salmonella Typhi Haplotypes in the Mekong River Delta Region of Vietnam.","volume":"5","author":"K Holt","year":"2011","journal-title":"PloS Negl Trop Dis"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"2171","DOI":"10.1128\/JCM.01983-09","article-title":"Typhoid in Kenya is associated with a dominant multidrug-resistant Salmonella enterica serovar Typhi haplotype that is also widespread in Southeast Asia.","volume":"48","author":"S Kariuki","year":"2010","journal-title":"J Clin Microbiol"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1662","DOI":"10.1128\/AAC.49.4.1662-1663.2005","article-title":"Rollback of Salmonella enterica serotype Typhi resistance to chloramphenicol and other antimicrobials in Kolkata, India.","volume":"49","author":"S Dutta","year":"2005","journal-title":"Antimicrob Agents Chemother"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1016\/j.diagmicrobio.2006.06.024","article-title":"Evaluation of new-generation serologic tests for the diagnosis of typhoid fever: data from a community-based surveillance in Calcutta, India.","volume":"56","author":"S Dutta","year":"2006","journal-title":"Diagn Microbiol Infect Dis"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"9051","DOI":"10.1016\/j.vaccine.2011.09.027","article-title":"Impact of Vi vaccination on spatial patterns of typhoid fever in the slums of Kolkata, India.","volume":"29","author":"M Ali","year":"2011","journal-title":"Vaccine"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"2481","DOI":"10.1128\/IAI.01265-10","article-title":"In vivo regulation of the Vi antigen in Salmonella and induction of immune responses with an in vivo-inducible promoter.","volume":"79","author":"C Janis","year":"2011","journal-title":"Infection and Immunity"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1128\/IAI.00972-09","article-title":"The Salmonella enterica serotype Typhi Vi capsular antigen is expressed after the bacterium enters the ileal mucosa.","volume":"78","author":"QT Tran","year":"2010","journal-title":"Infection and immunity"},{"key":"ref27","first-page":"412","article-title":"Regulation of Vi capsular polysaccharide synthesis in Salmonella enterica serotype Typhi.","volume":"2","author":"J Santander","year":"2008","journal-title":"J Infect Dev Ctries"},{"key":"ref28","first-page":"459","article-title":"Escherichia, shigella and salmonella.","author":"CA Bopp","year":"1999"},{"key":"ref29","article-title":"Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically; Approved Standard\u2014Eighth Edition","year":"2009"},{"key":"ref30","article-title":"The R FAQ.","author":"K Hornick","year":"2010"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/j.ijantimicag.2007.12.004","article-title":"Emergence of highly fluoroquinolone-resistant Salmonella enterica serovar Typhi in a community-based fever surveillance from Kolkata, India.","volume":"31","author":"S Dutta","year":"2008","journal-title":"Int J Antimicrob Agents"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"13536","DOI":"10.1073\/pnas.0403844101","article-title":"Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing.","volume":"101","author":"T Pearson","year":"2004","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"e1245","DOI":"10.1371\/journal.pntd.0001245","article-title":"Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid.","volume":"5","author":"KE Holt","year":"2011","journal-title":"PLoS Negl Trop Dis"}],"container-title":["PLoS Neglected Tropical Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pntd.0001490","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,23]],"date-time":"2018-10-23T10:49:43Z","timestamp":1540291783000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pntd.0001490"}},"subtitle":[],"editor":[{"given":"Joseph M.","family":"Vinetz","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2012,1,31]]},"references-count":33,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2012,1,31]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pntd.0001490","relation":{},"ISSN":["1935-2735"],"issn-type":[{"value":"1935-2735","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,1,31]]}}}