{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T08:04:41Z","timestamp":1791187481174,"version":"4.1.0"},"reference-count":54,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2014,6,5]],"date-time":"2014-06-05T00:00:00Z","timestamp":1401926400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosntds.org"],"crossmark-restriction":false},"short-container-title":["PLoS Negl Trop Dis"],"DOI":"10.1371\/journal.pntd.0002902","type":"journal-article","created":{"date-parts":[[2014,6,5]],"date-time":"2014-06-05T20:35:51Z","timestamp":1402000551000},"page":"e2902","update-policy":"https:\/\/doi.org\/10.1371\/journal.pntd.corrections_policy","source":"Crossref","is-referenced-by-count":164,"title":["Epidemiology of Leptospira Transmitted by Rodents in Southeast Asia"],"prefix":"10.1371","volume":"8","author":[{"given":"Jean-Fran\u00e7ois","family":"Cosson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mathieu","family":"Picardeau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mathilde","family":"Mielcarek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Caroline","family":"Tatard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yannick","family":"Chaval","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yupin","family":"Suputtamongkol","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Buchy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sathaporn","family":"Jittapalapong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vincent","family":"Herbreteau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Serge","family":"Morand","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2014,6,5]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1111\/j.1469-0691.2011.03474.x","article-title":"Emergence, control and re-emerging leptospirosis: dynamics of infection in the changing world","volume":"17","author":"RA Hartskeerl","year":"2011","journal-title":"Clin Microbiol Infect"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"S5","DOI":"10.1016\/j.ijantimicag.2010.06.012","article-title":"Estimating the burden of human leptospirosis","volume":"36 Suppl 1","author":"B Abela-Ridder","year":"2010","journal-title":"Int J Antimicrob Agents"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"124","DOI":"10.3201\/eid1301.060718","article-title":"Clinical diagnosis and geographic distribution of leptospirosis, Thailand","volume":"13","author":"V Wuthiekanun","year":"2007","journal-title":"Emerg Infect Dis"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"820","DOI":"10.1016\/S0140-6736(99)80012-9","article-title":"Salvador Leptospirosis Study Group. Urban epidemic of severe leptospirosis in Brazil","volume":"354","author":"Ko Al","year":"1999","journal-title":"Lancet"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"1265","DOI":"10.1016\/S1286-4579(00)01280-6","article-title":"Overview of the epidemiology, microbiology, and pathogenesis of <italic>Leptospira spp.<\/italic> in humans","volume":"2","author":"R Plank","year":"2000","journal-title":"Microbes and Infection"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1016\/S1473-3099(03)00830-2","article-title":"Peru-United States Leptospirosis Consortium. Leptospirosis: a zoonotic disease of global importance","volume":"3","author":"AR Bharti","year":"2003","journal-title":"Lancet Infect Dis"},{"issue":"7","key":"ref7","doi-asserted-by":"crossref","first-page":"e2324","DOI":"10.1371\/journal.pntd.0002324","article-title":"Etiology of Severe Non-malaria Febrile Illness in Northern Tanzania: A Prospective Cohort Study","volume":"7","author":"JA Crump","year":"2013","journal-title":"PLoS Negl Trop Dis"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/s13149-010-0043-2","article-title":"[Hospital-based active surveillance of human leptospirosis in Cambodia]","volume":"103","author":"A Berlioz-Arthaud","year":"2010","journal-title":"Bull Soc Pathol Exot"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"957","DOI":"10.4269\/ajtmh.2008.78.957","article-title":"Seroprevalence of leptospirosis and risk factor analysis in floodprone rural areas in Lao PDR","volume":"78","author":"L Kawaguchi","year":"2008","journal-title":"Am J Trop Med Hyg"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1128\/CMR.14.2.296-326.2001","article-title":"Leptospirosis","volume":"14","author":"PN Levett","year":"2001","journal-title":"Clinical Microbiology Reviews"},{"key":"ref11","first-page":"204","article-title":"Risk factors associated with leptospirosis in northeastern Thailand (1998) <italic>Am. J. Trop. Med.<\/italic>","volume":"63","author":"W Tangkanakul","year":"2000","journal-title":"Hyg"},{"key":"ref12","first-page":"35","article-title":"Cell aggregation: a mechanism of pathogenic <italic>Leptospira<\/italic> to survive in fresh water","volume":"7","author":"G Trueba","year":"2004","journal-title":"International Microbiology"},{"issue":"8","key":"ref13","doi-asserted-by":"crossref","first-page":"e308","DOI":"10.1371\/journal.pmed.0030308","article-title":"Determining risk for severe leptospirosis by molecular analysis of environmental surface waters for pathogenic <italic>Leptospira<\/italic>","volume":"3","author":"CA Ganoza","year":"2006","journal-title":"PLoS Med"},{"key":"ref14","unstructured":"Herbreteau V, Rerkamnuaychoke W, Jittapalapong S, Chaval Y, Cosson JF, Morand S. (eds) (2011) Field and laboratory protocols for rodent studies. Kasetsart University Press 46 p. (freely available on <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.ceropath.org\/research\/protocols\" xlink:type=\"simple\">http:\/\/www.ceropath.org\/research\/protocols<\/ext-link>)."},{"key":"ref15","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1186\/1471-2148-10-184","article-title":"Revisiting the taxonomy of the <italic>Rattini<\/italic> tribe: a phylogeny-based delimitation of species boundaries","volume":"10","author":"M Pag\u00e8s","year":"2010","journal-title":"BMC Evolutionary Biology"},{"issue":"11","key":"ref16","doi-asserted-by":"crossref","first-page":"e48374","DOI":"10.1371\/journal.pone.0048374","article-title":"Next-Generation Sequencing for Rodent Barcoding: Species Identification from Fresh, Degraded and Environmental Samples","volume":"7","author":"M Galan","year":"2012","journal-title":"Plos One"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1019","DOI":"10.1111\/mec.12149","article-title":"Cyto-nuclear discordance among the Southeast Asian Black rats (<italic>Rattus rattus<\/italic> complex)","volume":"22","author":"M Pag\u00e8s","year":"2013","journal-title":"Molecular Ecology"},{"issue":"11","key":"ref18","doi-asserted-by":"crossref","first-page":"e26357","DOI":"10.1371\/journal.pone.0026357","article-title":"Multiple Geographic Origins of Commensalism and Complex Dispersal History of Black Rats","volume":"6","author":"K Aplin","year":"2011","journal-title":"PLoS One"},{"key":"ref19","unstructured":"Clairon N, Lepicard D, Picard D, Chaval Y (2010) Rodent SEA: a web service for South East Asian Rodent identification. (<ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.ceropath.org\/barcoding_tool\/rodentsea\" xlink:type=\"simple\">http:\/\/www.ceropath.org\/barcoding_tool\/rodentsea<\/ext-link>)."},{"key":"ref20","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1016\/j.meegid.2012.03.020","article-title":"Host cell\/<italic>Orientia tsutsugamushi<\/italic> interactions: Evolution and expression of syndecan-4 in Asian rodents (Rodentia, Muridae)","volume":"12","author":"D Badenhorst","year":"2012","journal-title":"Infection, Genetics and Evolution"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"2276","DOI":"10.1128\/IAI.68.4.2276-2285.2000","article-title":"The leptospiral major outer membrane protein LipL32 is a lipoprotein expressed during mammalian infection","volume":"68","author":"DA Haake","year":"2000","journal-title":"Infect Immun"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1016\/j.diagmicrobio.2009.03.014","article-title":"Detection of pathogenic Leptospira spp. through TaqMan polymerase chain reaction targeting the LipL32 gene","volume":"64","author":"RA Stoddard","year":"2009","journal-title":"Diagn Microbiol Infect Dis"},{"issue":"9","key":"ref23","doi-asserted-by":"crossref","first-page":"2219","DOI":"10.1128\/JCM.30.9.2219-2224.1992","article-title":"Polymerase chain reaction for detection of <italic>Leptospira<\/italic> spp. in clinical samples","volume":"30","author":"F M\u00e9rien","year":"1992","journal-title":"J Clin Microbiol"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1186\/1476-0711-5-28","article-title":"Multilocus sequence typing method for identification and genotypic classification of pathogenic Leptospira species","volume":"23, 5","author":"N Ahmed","year":"2006","journal-title":"Ann Clin Microbiol Antimicrob"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"3954","DOI":"10.1128\/JCM.00336-06","article-title":"Application of multilocus variable-number tandem-repeat analysis for molecular typing of the agent of leptospirosis","volume":"44","author":"L Sala\u00fcn","year":"2006","journal-title":"J Clin Microbiol"},{"issue":"5","key":"ref26","doi-asserted-by":"crossref","first-page":"e15335","DOI":"10.1371\/journal.pone.0015335","article-title":"Bioinformatics describes novel Loci for high resolution discrimination of leptospira isolates","volume":"15","author":"GM Cerqueira","year":"2010","journal-title":"PLoS One"},{"issue":"7","key":"ref27","doi-asserted-by":"crossref","first-page":"e2752","DOI":"10.1371\/journal.pone.0002752","article-title":"Conservation of the S10-spc-alpha locus within otherwise highly plastic genomes provides phylogenetic insight into the genus Leptospira","volume":"3","author":"B Victoria","year":"2008","journal-title":"PLoS One"},{"issue":"11","key":"ref28","doi-asserted-by":"crossref","first-page":"e1374","DOI":"10.1371\/journal.pntd.0001374","article-title":"Comparison of two multilocus sequence based genotyping schemes for Leptospira species","volume":"5","author":"A Ahmed","year":"2011","journal-title":"PLoS Negl Trop Dis"},{"issue":"8","key":"ref29","doi-asserted-by":"crossref","first-page":"e12637","DOI":"10.1371\/journal.pone.0012637","article-title":"Genetic affinities within a large global collection of pathogenic Leptospira: implications for strain identification and molecular epidemiology","volume":"5","author":"K Nalam","year":"2010","journal-title":"PLoS One"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1093\/molbev\/msp259","article-title":"SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building","volume":"27","author":"M Gouy","year":"2010","journal-title":"Mol Biol Evol"},{"key":"ref31","unstructured":"Barton K (2012) Model selection and model averaging based on information criteria (AICc and alike). Package MuMin v.1.7.2 for R software."},{"key":"ref32","unstructured":"Bates D, Maechler M, Bolker B (2012) Linear mixed-effects models using S4 classes. Package Ime4 for R software."},{"key":"ref33","doi-asserted-by":"crossref","unstructured":"Burnham K (1998). Model Selection and Inference. A Practical Information-theoretic Approach. New-York: Heidelberg: Springer-Verlag.","DOI":"10.1007\/978-1-4757-2917-7"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.tree.2003.10.013","article-title":"Model selection in ecology and evolution","volume":"19","author":"J Johnson","year":"2004","journal-title":"Trends in Ecology and Evolution"},{"issue":"1","key":"ref35","doi-asserted-by":"crossref","first-page":"e56","DOI":"10.1371\/journal.pntd.0000056","article-title":"A Dominant Clone of <italic>Leptospira interrogans<\/italic> Associated with an Outbreak of Human Leptospirosis in Thailand","volume":"1","author":"J Thaipadungpanit","year":"2007","journal-title":"PLoS Negl Trop Dis"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.actatropica.2008.07.005","article-title":"Carriage of <italic>Leptospira interrogans<\/italic> among domestic rats from an urban setting highly endemic for leptospirosis in Brazil","volume":"108","author":"MT de Faria","year":"2008","journal-title":"Acta Tropica"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"906","DOI":"10.4269\/ajtmh.2009.09-0195","article-title":"Prevalence of <italic>Leptospira<\/italic> spp. in urban rodents from a groceries trade center of Medellin, Colombia","volume":"81","author":"P Agudelo-Florez","year":"2009","journal-title":"Am J Trop Med Hyg"},{"issue":"10","key":"ref38","doi-asserted-by":"crossref","first-page":"e1361","DOI":"10.1371\/journal.pntd.0001361","article-title":"Rodent abundance dynamics and Leptospirosis carriage in an area of hyper-endemicity in New Caledonia","volume":"5","author":"J Perez","year":"2011","journal-title":"PLoS Negl Trop Dis"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"1032","DOI":"10.4269\/ajtmh.2012.11-0349","article-title":"<italic>Leptospira<\/italic> and rodents in Cambodia: environmental determinants of infection","volume":"86","author":"S Ivanova","year":"2012","journal-title":"Am J Trop. Med Hyg"},{"key":"ref40","unstructured":"Combes C. (2001). Parasitism: the ecology and evolution of intimate interactions. 1st edn. The University of Chicago Press, Chicago."},{"key":"ref41","doi-asserted-by":"crossref","first-page":"7346","DOI":"10.3402\/iee.v1i0.7346","article-title":"The impact of multiple infections on wild animal hosts: a review","volume":"1","author":"F Bordes","year":"2011","journal-title":"Infection Ecology & Epidemiology"},{"key":"ref42","doi-asserted-by":"crossref","unstructured":"Keeling MJ, Rohani P (2008) Modeling Infectious Diseases in Humans and Animals. Princeton University Press.","DOI":"10.1515\/9781400841035"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1016\/S0149-7634(00)00027-0","article-title":"The effects of hormones on sex differences in infection: from genes to behavior","volume":"24","author":"SL Klein","year":"2000","journal-title":"Neuroscience and Biobehavioral Reviews"},{"key":"ref44","first-page":"20178","article-title":"The diversity of microparasites of rodents: a comparative analysis that helps in identifying rodent-borne rich habitats in Southeast Asia","volume":"3","author":"F Bordes","year":"2013","journal-title":"Inf Ecol Epidemiol"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"18637","DOI":"10.3402\/iee.v2i0.18637","article-title":"Rodent-borne diseases in Thailand: targeting rodent carriers and risky habitats","volume":"2","author":"V Herbreteau","year":"2012","journal-title":"Infection, Ecology & Epidemiology"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"3487","DOI":"10.1098\/rspb.2009.0881","article-title":"Sex-biased dispersal patterns depend on the spatial scale in a small rodent","volume":"276","author":"B Gauffre","year":"2009","journal-title":"Proceedings of the Royal Society of London serie B"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.agee.2013.05.005","article-title":"How the common vole copes with modern farming: Insights from a capture-mark-recapture experiment","volume":"177","author":"T Bonnet","year":"2013","journal-title":"Agriculture Ecosystems & Environment"},{"issue":"17","key":"ref48","first-page":"3569","article-title":"Landscape genetics highlight the pre-eminent role of rodent metapopulation host dynamics in the epidemiology of hantavirus <italic>Puumala<\/italic>","volume":"20","author":"E Guivier","year":"2011","journal-title":"Molecular Ecology"},{"key":"ref49","unstructured":"Singleton GR, Smythe L, Smith G, SprattDM, Aplin K, Smith AL (2003) Rodent diseases in southeast Asia and Australia: inventory of recent surveys. Singleton GR, Hinds LA, Krebs CJ, Spratt DM, eds. Rats, Mice and People: Rodent Biology and Management. Canberra: Australian Centre for International Agricultural Research, 26\u201330."},{"key":"ref50","doi-asserted-by":"crossref","first-page":"278","DOI":"10.4269\/ajtmh.2002.67.278","article-title":"the importance of leptospirosis in Southeast Asia","volume":"67","author":"K Laras","year":"2002","journal-title":"Am J Trop Med Hyg"},{"issue":"4","key":"ref51","doi-asserted-by":"crossref","first-page":"704","DOI":"10.4269\/ajtmh.12-0662","article-title":"Isolation and molecular characterization of <italic>Leptospira interrogans<\/italic> and <italic>Leptospira borgpetersenii<\/italic> isolates from the urban Rat Populations of Kuala Lumpur, Malaysia","volume":"88","author":"D Benacer","year":"2013","journal-title":"Am J Trop Med Hyg"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1590\/S1517-83822010000100022","article-title":"Characterization of <italic>Leptospira borgpetersenii<\/italic> isolates from field rats (Rattus norvegicus) by 16S rRNA and <italic>lipL32<\/italic> gene sequencing","volume":"41","author":"K Vedhagiri","year":"2010","journal-title":"Braz J Microbiol"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"14560","DOI":"10.1073\/pnas.0603979103","article-title":"Genome reduction in Leptospira borgpetersenii reflects limited transmission potential","volume":"103","author":"DM Bulach","year":"2006","journal-title":"PNAS"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"4564","DOI":"10.1021\/pr9004597","article-title":"Global Proteome Analysis of <italic>Leptospira interrogans<\/italic>","volume":"8","author":"A Eshghi","year":"2009","journal-title":"Journal of Proteome Research"}],"container-title":["PLoS Neglected Tropical Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pntd.0002902","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,20]],"date-time":"2020-08-20T16:42:10Z","timestamp":1597941730000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pntd.0002902"}},"subtitle":[],"editor":[{"given":"Darren J.","family":"Gray","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2014,6,5]]},"references-count":54,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2014,6,5]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pntd.0002902","relation":{},"ISSN":["1935-2735"],"issn-type":[{"value":"1935-2735","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,6,5]]}}}