{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,5]],"date-time":"2026-06-05T11:15:35Z","timestamp":1780658135149,"version":"3.54.1"},"reference-count":32,"publisher":"Public Library of Science (PLoS)","issue":"11","license":[{"start":{"date-parts":[[2015,11,12]],"date-time":"2015-11-12T00:00:00Z","timestamp":1447286400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosntds.org"],"crossmark-restriction":false},"short-container-title":["PLoS Negl Trop Dis"],"DOI":"10.1371\/journal.pntd.0004183","type":"journal-article","created":{"date-parts":[[2015,11,12]],"date-time":"2015-11-12T20:04:56Z","timestamp":1447358696000},"page":"e0004183","update-policy":"https:\/\/doi.org\/10.1371\/journal.pntd.corrections_policy","source":"Crossref","is-referenced-by-count":44,"title":["Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014"],"prefix":"10.1371","volume":"9","author":[{"given":"Fahima","family":"Chowdhury","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alison E.","family":"Mather","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yasmin Ara","family":"Begum","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhammad","family":"Asaduzzaman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nabilah","family":"Baby","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Salma","family":"Sharmin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rajib","family":"Biswas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhammad","family":"Ikhtear Uddin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Regina C.","family":"LaRocque","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jason B.","family":"Harris","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stephen B.","family":"Calderwood","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edward T.","family":"Ryan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John D.","family":"Clemens","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicholas R.","family":"Thomson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Firdausi","family":"Qadri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2015,11,12]]},"reference":[{"issue":"8868","key":"ref1","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/0140-6736(93)92811-7","article-title":"Large epidemic of cholera-like disease in Bangladesh caused by Vibrio cholerae 0139 synonym Bengal","volume":"342","author":"M Albert","year":"1993","journal-title":"The Lancet"},{"issue":"8846","key":"ref2","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1016\/0140-6736(93)90480-5","article-title":"Emergence of novel strain of Vibrio cholerae with epidemic potential in southern and eastern India","volume":"341","author":"T Ramamurthy","year":"1993","journal-title":"The Lancet"},{"issue":"9","key":"ref3","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.3201\/eid0909.020443","article-title":"Reemergence of epidemic Vibrio cholerae O139, Bangladesh","volume":"9","author":"SM Faruque","year":"2003","journal-title":"Emerg Infect Dis"},{"issue":"Pt 12","key":"ref4","doi-asserted-by":"crossref","first-page":"1736","DOI":"10.1099\/jmm.0.049635-0","article-title":"Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006\u20132011","volume":"61","author":"SM Rashed","year":"2012","journal-title":"J Med Microbiol"},{"key":"ref5","first-page":"1713","article-title":"Vibrio cholerae O1 El Tor and O139 Bengal strains carrying ctxB(ET), Bangladesh","author":"SM Rashed","journal-title":"Emerg Infect Dis"},{"issue":"6","key":"ref6","doi-asserted-by":"crossref","first-page":"4096","DOI":"10.1128\/AEM.00066-06","article-title":"Seasonal cholera caused by Vibrio cholerae serogroups O1 and O139 in the coastal aquatic environment of Bangladesh","volume":"72","author":"M Alam","year":"2006","journal-title":"Appl Environ Microbiol"},{"issue":"7365","key":"ref7","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1038\/nature10392","article-title":"Evidence for several waves of global transmission in the seventh cholera pandemic","volume":"477","author":"A Mutreja","year":"2011","journal-title":"Nature"},{"issue":"12","key":"ref8","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1038\/nrgastro.2011.174","article-title":"New-generation vaccines against cholera","volume":"8","author":"J Clemens","year":"2011","journal-title":"Nature Reviews Gastroenterology and Hepatology"},{"issue":"1","key":"ref9","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1080\/08035250500286987","article-title":"Young children non\u2010immunized against measles: Characteristics and programmatic implications","volume":"95","author":"F Chowdhury","year":"2006","journal-title":"Acta Paediatrica"},{"issue":"3","key":"ref10","doi-asserted-by":"crossref","first-page":"e403","DOI":"10.1371\/journal.pntd.0000403","article-title":"Immunologic responses to Vibrio cholerae in patients co-infected with intestinal parasites in Bangladesh","volume":"3","author":"JB Harris","year":"2009","journal-title":"PLoS neglected tropical diseases"},{"issue":"51","key":"ref11","doi-asserted-by":"crossref","first-page":"6058","DOI":"10.1016\/j.vaccine.2013.10.021","article-title":"Coverage and cost of a large oral cholera vaccination program in a high-risk cholera endemic urban population in Dhaka, Bangladesh","volume":"31","author":"IA Khan","year":"2013","journal-title":"Vaccine"},{"key":"ref12","unstructured":"Organization WH. The treatment of diarrhoea: a manual for physicians and other senior health workers 2005 [cited 2015 7-3-2015]. <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.who.int\/iris\/handle\/10665\/43209\" xlink:type=\"simple\">http:\/\/www.who.int\/iris\/handle\/10665\/43209<\/ext-link>."},{"key":"ref13","article-title":"Management of diarrhea at ICDDR,B hospital","volume":"31","author":"M Rahim","year":"2009","journal-title":"ICDDR,B. Glimpse"},{"issue":"4","key":"ref14","doi-asserted-by":"crossref","first-page":"738","DOI":"10.4269\/ajtmh.14-0095","article-title":"Bacterial Shedding in Household Contacts of Cholera Patients in Dhaka, Bangladesh","volume":"91","author":"AA Weil","year":"2014","journal-title":"The American journal of tropical medicine and hygiene"},{"issue":"1","key":"ref15","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1128\/CDLI.1.1.51-54.1994","article-title":"Production, characterization, and application of monoclonal antibodies to Vibrio cholerae O139 synonym Bengal","volume":"1","author":"F Qadri","year":"1994","journal-title":"Clinical and diagnostic laboratory immunology"},{"issue":"4","key":"ref16","doi-asserted-by":"crossref","first-page":"2849","DOI":"10.1128\/AEM.72.4.2849-2855.2006","article-title":"Toxigenic Vibrio cholerae in the aquatic environment of Mathbaria, Bangladesh","volume":"72","author":"M Alam","year":"2006","journal-title":"Applied and environmental microbiology"},{"key":"ref17","article-title":"Postgenomic approaches to cholera vaccine development","author":"RC LaRocque","year":"2006","journal-title":"Postgenomic approaches to cholera vaccine development"},{"issue":"1","key":"ref18","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1128\/IAI.21.1.1-6.1978","article-title":"Correlation between intestinal synthesis of specific immunoglobulin A and protection against experimental cholera in mice","volume":"21","author":"A Svennerholm","year":"1978","journal-title":"Infection and immunity"},{"issue":"6","key":"ref19","doi-asserted-by":"crossref","first-page":"314","DOI":"10.1111\/j.1348-0421.2008.00041.x","article-title":"Development and validation of a mismatch amplification mutation PCR assay to monitor the dissemination of an emerging variant of Vibrio cholerae O1 biotype El Tor","volume":"52","author":"M Morita","year":"2008","journal-title":"Microbiology and immunology"},{"key":"ref20"},{"issue":"9","key":"ref21","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1101\/gr.107524.110","article-title":"The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data","volume":"20","author":"A McKenna","year":"2010","journal-title":"Genome Res"},{"issue":"16","key":"ref22","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The Sequence Alignment\/Map format and SAMtools","volume":"25","author":"H Li","year":"2009","journal-title":"Bioinformatics (Oxford, England)"},{"issue":"5964","key":"ref23","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1126\/science.1182395","article-title":"Evolution of MRSA during hospital transmission and intercontinental spread","volume":"327","author":"SR Harris","year":"2010","journal-title":"Science (New York, NY"},{"key":"ref24","article-title":"Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins","author":"NJ Croucher","year":"2014","journal-title":"Nucleic acids research"},{"issue":"21","key":"ref25","doi-asserted-by":"crossref","first-page":"2688","DOI":"10.1093\/bioinformatics\/btl446","article-title":"RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models","volume":"22","author":"A Stamatakis","year":"2006","journal-title":"Bioinformatics"},{"issue":"5","key":"ref26","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1101\/gr.074492.107","article-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs","volume":"18","author":"DR Zerbino","year":"2008","journal-title":"Genome research"},{"issue":"4","key":"ref27","doi-asserted-by":"crossref","first-page":"578","DOI":"10.1093\/bioinformatics\/btq683","article-title":"Scaffolding pre-assembled contigs using SSPACE","volume":"27","author":"M Boetzer","year":"2011","journal-title":"Bioinformatics"},{"issue":"Suppl 14","key":"ref28","doi-asserted-by":"crossref","first-page":"S8","DOI":"10.1186\/1471-2105-13-S14-S8","article-title":"GapFiller: a de novo assembly approach to fill the gap within paired reads","volume":"13","author":"F Nadalin","year":"2012","journal-title":"BMC bioinformatics"},{"issue":"16","key":"ref29","doi-asserted-by":"crossref","first-page":"3422","DOI":"10.1093\/bioinformatics\/bti553","article-title":"ACT: the Artemis comparison tool","volume":"21","author":"TJ Carver","year":"2005","journal-title":"Bioinformatics"},{"issue":"3","key":"ref30","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"SF Altschul","year":"1990","journal-title":"Journal of molecular biology"},{"issue":"1","key":"ref31","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1186\/1757-4749-6-3","article-title":"Genome sequence and comparative analysis of a Vibrio cholerae O139 strain E306 isolated from a cholera case in China","volume":"6","author":"Y Yi","year":"2014","journal-title":"Gut Pathog"},{"issue":"17","key":"ref32","doi-asserted-by":"crossref","first-page":"4367","DOI":"10.1128\/JB.00698-10","article-title":"Relatedness of Vibrio cholerae O1\/O139 isolates from patients and their household contacts, determined by multilocus variable-number tandem-repeat analysis","volume":"192","author":"EA Kendall","year":"2010","journal-title":"Journal of bacteriology"}],"container-title":["PLOS Neglected Tropical Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pntd.0004183","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,9,11]],"date-time":"2020-09-11T09:04:25Z","timestamp":1599815065000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pntd.0004183"}},"subtitle":[],"editor":[{"given":"Ruifu","family":"Yang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2015,11,12]]},"references-count":32,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2015,11,12]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pntd.0004183","relation":{},"ISSN":["1935-2735"],"issn-type":[{"value":"1935-2735","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,11,12]]}}}