{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,18]],"date-time":"2026-10-18T02:30:15Z","timestamp":1792290615281,"version":"4.4.0"},"update-to":[{"DOI":"10.1371\/journal.pntd.0010716","type":"new_version","label":"New version","source":"publisher","updated":{"date-parts":[[2022,9,8]],"date-time":"2022-09-08T00:00:00Z","timestamp":1662595200000}}],"reference-count":65,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2022,8,26]],"date-time":"2022-08-26T00:00:00Z","timestamp":1661472000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000272","name":"National Institute for Health Research","doi-asserted-by":"publisher","award":["16_136_111"],"award-info":[{"award-number":["16_136_111"]}],"id":[{"id":"10.13039\/501100000272","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100004440","name":"Wellcome Trust","doi-asserted-by":"publisher","award":["206194"],"award-info":[{"award-number":["206194"]}],"id":[{"id":"10.13039\/100004440","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000265","name":"Medical Research Council","doi-asserted-by":"publisher","award":["MR\/L00464X\/1"],"award-info":[{"award-number":["MR\/L00464X\/1"]}],"id":[{"id":"10.13039\/501100000265","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["INV-036234"],"award-info":[{"award-number":["INV-036234"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosntds.org"],"crossmark-restriction":false},"short-container-title":["PLoS Negl Trop Dis"],"abstract":"\n Background<\/jats:title>\n \n Salmonellosis causes significant morbidity and mortality in Africa. Information on lineages of invasive\n Salmonella<\/jats:italic>\n circulating in Nigeria is sparse.\n <\/jats:p>\n <\/jats:sec>\n \n Methods<\/jats:title>\n \n Salmonella enterica<\/jats:italic>\n isolated from blood (n = 60) and cerebrospinal fluid (CSF, n = 3) between 2016 and 2020 from five tertiary hospitals in southwest Nigeria were antimicrobial susceptibility-tested and Illumina-sequenced. Genomes were analysed using publicly-available bioinformatic tools.\n <\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n \n Isolates and sequence types (STs) from blood were\n S<\/jats:italic>\n . Typhi [ST1, n = 1 and ST2, n = 43] and invasive non-typhoidal\n Salmonella<\/jats:italic>\n (iNTS) (\n S<\/jats:italic>\n .\n Enteritidis<\/jats:italic>\n [ST11, n = 7],\n S<\/jats:italic>\n . Durham [ST10, n = 2],\n S<\/jats:italic>\n . Rissen [ST8756, n = 2],\n S<\/jats:italic>\n . Chester [ST2063, n = 1],\n S<\/jats:italic>\n . Dublin [ST10, n = 1],\n S<\/jats:italic>\n . Infantis [ST603, n = 1],\n S<\/jats:italic>\n . Telelkebir [ST8757, n = 1] and\n S<\/jats:italic>\n . Typhimurium [ST313, n = 1]).\n S<\/jats:italic>\n . Typhi ST2 (n = 2) and\n S<\/jats:italic>\n . Adabraka ST8757 (n = 1) were recovered from CSF. Most\n S<\/jats:italic>\n . Typhi belonged to genotype 3.1.1 (n = 44), carried an IncY plasmid, had several antibiotic resistance genes (ARGs) including\n bla<\/jats:italic>\n TEM-1<\/jats:sub>\n (n = 38),\n aph(6)-Id<\/jats:italic>\n (n = 32),\n tet(A)<\/jats:italic>\n (n = 33),\n sul2<\/jats:italic>\n (n = 32),\n dfrA14<\/jats:italic>\n (n = 30) as well as quinolone resistance-conferring gyrA_S83Y single-nucleotide polymorphisms (n = 37). All\n S<\/jats:italic>\n . Enteritidis harboured\n aph(3\u201d)-Ib<\/jats:italic>\n ,\n bla<\/jats:italic>\n TEM-1<\/jats:sub>\n ,\n catA1<\/jats:italic>\n ,\n dfrA7<\/jats:italic>\n ,\n sul1<\/jats:italic>\n ,\n sul2<\/jats:italic>\n ,\n tet(B)<\/jats:italic>\n genes, and a single ARG,\n qnrB19<\/jats:italic>\n , was detected in\n S<\/jats:italic>\n . Telelkebir. Typhoidal toxins\n cdtB<\/jats:italic>\n ,\n pltA<\/jats:italic>\n and\n pltB<\/jats:italic>\n were detected in\n S<\/jats:italic>\n . Typhi, Rissen, Chester, and Telelkebir.\n <\/jats:p>\n <\/jats:sec>\n \n Conclusion<\/jats:title>\n \n Most invasive salmonelloses in southwest Nigeria are vaccine-preventable infections due to multidrug-resistant, West African dominant\n S<\/jats:italic>\n . Typhi lineage 3.1.1. Invasive NTS serovars, including some harbouring typhoidal toxin or resistance genes, represented a third of the isolates emphasizing the need for better diagnosis and surveillance.\n <\/jats:p>\n <\/jats:sec>","DOI":"10.1371\/journal.pntd.0010716","type":"journal-article","created":{"date-parts":[[2022,8,26]],"date-time":"2022-08-26T14:00:53Z","timestamp":1661522453000},"page":"e0010716","update-policy":"https:\/\/doi.org\/10.1371\/journal.pntd.corrections_policy","source":"Crossref","is-referenced-by-count":45,"title":["Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria"],"prefix":"10.1371","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3738-4584","authenticated-orcid":true,"given":"Odion O.","family":"Ikhimiukor","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anderson 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