{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T23:00:45Z","timestamp":1792537245780,"version":"4.5.0"},"reference-count":41,"publisher":"Public Library of Science (PLoS)","issue":"7","license":[{"start":{"date-parts":[[2008,7,9]],"date-time":"2008-07-09T00:00:00Z","timestamp":1215561600000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0002628","type":"journal-article","created":{"date-parts":[[2008,7,9]],"date-time":"2008-07-09T04:03:40Z","timestamp":1215576220000},"page":"e2628","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":70,"title":["Comparative Analysis of Viral Gene Expression Programs during Poxvirus Infection: A Transcriptional Map of the Vaccinia and Monkeypox Genomes"],"prefix":"10.1371","volume":"3","author":[{"given":"Kathleen H.","family":"Rubins","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lisa E.","family":"Hensley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"George W.","family":"Bell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chunlin","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elliot J.","family":"Lefkowitz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patrick O.","family":"Brown","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David A.","family":"Relman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2008,7,9]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"1449","DOI":"10.1016\/S0140-6736(05)63725-7","article-title":"Re-emergence of human monkeypox in Zaire in 1996. Monkeypox Epidemiologic Working Group.","volume":"349","author":"VB Mukinda","year":"1997","journal-title":"Lancet"},{"key":"ref2","first-page":"304","article-title":"Human monkeypox\u2013Kasai Oriental, Zaire, 1996\u20131997.","volume":"46","year":"1997","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"ref3","first-page":"1168","article-title":"Human monkeypox\u2013Kasai Oriental, Democratic Republic of Congo, February 1996\u2013October 1997.","volume":"46","year":"1997","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1093\/oxfordjournals.bmb.a011720","article-title":"Re-emergence of monkeypox in Africa: a review of the past six years.","volume":"54","author":"DL Heymann","year":"1998","journal-title":"Br Med Bull"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/S1473-3099(03)00856-9","article-title":"Human monkeypox: an emerging zoonosis.","volume":"4","author":"DB Di Giulio","year":"2004","journal-title":"Lancet Infect Dis"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1056\/NEJMoa032299","article-title":"The detection of monkeypox in humans in the Western Hemisphere.","volume":"350","author":"KD Reed","year":"2004","journal-title":"N Engl J Med"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1016\/S0014-5793(01)03144-1","article-title":"Human monkeypox and smallpox viruses: genomic comparison.","volume":"509","author":"SN Shchelkunov","year":"2001","journal-title":"FEBS Lett"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1006\/viro.2002.1446","article-title":"Analysis of the Monkeypox Virus Genome.","volume":"297","author":"SN Shchelkunov","year":"2002","journal-title":"Virology"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1016\/j.virol.2005.05.030","article-title":"Virulence differences between monkeypox virus isolates from West Africa and the Congo basin.","volume":"340","author":"N Chen","year":"2005","journal-title":"Virology"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"2661","DOI":"10.1099\/vir.0.81215-0","article-title":"A tale of two clades: monkeypox viruses.","volume":"86","author":"AM Likos","year":"2005","journal-title":"J Gen Virol"},{"key":"ref11","first-page":"2849","article-title":"Poxviridae: The Viruses and Their Replication.","author":"B Moss","year":"2001"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"608","DOI":"10.1128\/JVI.23.3.608-615.1977","article-title":"Transcriptional complexity of vaccinia virus in vivo and in vitro.","volume":"23","author":"E Paoletti","year":"1977","journal-title":"J Virol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1128\/JVI.26.3.554-569.1978","article-title":"Sequence complexity and relative abundance of vaccinia virus mRNA&apos;s synthesized in vivo and in vitro.","volume":"26","author":"RF Boone","year":"1978","journal-title":"J Virol"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"3487","DOI":"10.1002\/j.1460-2075.1988.tb03224.x","article-title":"Derepression of a novel class of vaccinia virus genes upon DNA replication.","volume":"7","author":"JC Vos","year":"1988","journal-title":"Embo J"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"3515","DOI":"10.1128\/JVI.67.6.3515-3527.1993","article-title":"Characterization and temporal regulation of mRNAs encoded by vaccinia virus intermediate-stage genes.","volume":"67","author":"CJ Baldick Jr","year":"1993","journal-title":"J Virol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1007\/s11262-008-0203-7","article-title":"Transcriptional profiling of Marek&apos;s disease virus genes during cytolytic and latent infection.","volume":"36","author":"M Heidari","year":"2008","journal-title":"Virus Genes"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"9916","DOI":"10.1128\/JVI.74.21.9916-9927.2000","article-title":"Global analysis of herpes simplex virus type 1 transcription using an oligonucleotide-based DNA microarray.","volume":"74","author":"SW Stingley","year":"2000","journal-title":"J Virol"},{"key":"ref18","first-page":"423","article-title":"Design of a herpes simplex virus type 2 long oligonucleotide-based microarray: global analysis of HSV-2 transcript abundance during productive infection.","volume":"292","author":"JS Aguilar","year":"2005","journal-title":"Methods Mol Biol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1016\/j.virol.2005.12.036","article-title":"Quantitative comparison of the HSV-1 and HSV-2 transcriptomes using DNA microarray analysis.","volume":"348","author":"JS Aguilar","year":"2006","journal-title":"Virology"},{"key":"ref20","author":"JJ Esposito"},{"key":"ref21","author":"CA Cummings"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"467","DOI":"10.1021\/pr025521v","article-title":"Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns.","volume":"1","author":"J Herrero","year":"2002","journal-title":"J Proteome Res"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","article-title":"Cluster analysis and display of genome-wide expression patterns.","volume":"95","author":"MB Eisen","year":"1998","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"5116","DOI":"10.1073\/pnas.091062498","article-title":"Significance analysis of microarrays applied to the ionizing radiation response.","volume":"98","author":"VG Tusher","year":"2001","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1186\/1471-2105-5-96","article-title":"Base-By-Base: single nucleotide-level analysis of whole viral genome alignments.","volume":"5","author":"R Brodie","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1016\/0022-2836(89)90108-3","article-title":"Structure of vaccinia virus late promoters.","volume":"210","author":"AJ Davison","year":"1989","journal-title":"J Mol Biol"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1016\/0022-2836(89)90107-1","article-title":"Structure of vaccinia virus early promoters.","volume":"210","author":"AJ Davison","year":"1989","journal-title":"J Mol Biol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"4710","DOI":"10.1128\/JVI.66.8.4710-4719.1992","article-title":"Mutational analysis of the core, spacer, and initiator regions of vaccinia virus intermediate-class promoters.","volume":"66","author":"CJ Baldick Jr","year":"1992","journal-title":"J Virol"},{"key":"ref29"},{"key":"ref30"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"2140","DOI":"10.1073\/pnas.0711573105","article-title":"Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes.","volume":"105","author":"E Assarsson","year":"2008","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1007\/BF02634257","article-title":"A method for the isolation and serial propagation of keratinocytes, endothelial cells, and fibroblasts from a single punch biopsy of human skin.","volume":"31","author":"J Normand","year":"1995","journal-title":"In Vitro Cell Dev Biol Anim"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"1349","DOI":"10.1099\/0022-1317-72-6-1349","article-title":"Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat.","volume":"72 ( Pt 6)","author":"GL Smith","year":"1991","journal-title":"J Gen Virol"},{"key":"ref34","first-page":"135","article-title":"Passive immunization of Ebola virus-infected cynomolgus monkeys with immunoglobulin from hyperimmune horses.","volume":"11","author":"PB Jahrling","year":"1996","journal-title":"Arch Virol Suppl"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1016\/0022-2836(67)90047-2","article-title":"Hybridization and sedimentation studies on \u201cearly\u201d and \u201clate\u201d vaccinia messenger RNA.","volume":"27","author":"KI Oda","year":"1967","journal-title":"J Mol Biol"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1038\/35000501","article-title":"Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.","volume":"403","author":"AA Alizadeh","year":"2000","journal-title":"Nature"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1101\/sqb.1999.64.71","article-title":"The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes.","volume":"64","author":"A Alizadeh","year":"1999","journal-title":"Cold Spring Harb Symp Quant Biol"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1016\/S0076-6879(99)03014-1","article-title":"DNA arrays for analysis of gene expression.","volume":"303","author":"MB Eisen","year":"1999","journal-title":"Methods Enzymol"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1038\/35021093","article-title":"Molecular portraits of human breast tumours.","volume":"406","author":"CM Perou","year":"2000","journal-title":"Nature"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"D766","DOI":"10.1093\/nar\/gkl1019","article-title":"The Stanford Microarray Database: implementation of new analysis tools and open source release of software.","volume":"35","author":"J Demeter","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"1544","DOI":"10.1093\/bioinformatics\/18.11.1544","article-title":"Poxvirus Orthologous Clusters (POCs).","volume":"18","author":"A Ehlers","year":"2002","journal-title":"Bioinformatics"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0002628","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,9]],"date-time":"2020-05-09T04:02:48Z","timestamp":1588996968000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0002628"}},"subtitle":[],"editor":[{"given":"Andrea","family":"Califano","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2008,7,9]]},"references-count":41,"journal-issue":{"issue":"7","published-online":{"date-parts":[[2008,7,9]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0002628","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008,7,9]]}}}