{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T16:51:42Z","timestamp":1758819102295},"reference-count":42,"publisher":"Public Library of Science (PLoS)","issue":"4","license":[{"start":{"date-parts":[[2009,4,28]],"date-time":"2009-04-28T00:00:00Z","timestamp":1240876800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0005280","type":"journal-article","created":{"date-parts":[[2009,4,27]],"date-time":"2009-04-27T22:39:06Z","timestamp":1240871946000},"page":"e5280","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":21,"title":["Application of Homozygosity Haplotype Analysis to Genetic Mapping with High-Density SNP Genotype Data"],"prefix":"10.1371","volume":"4","author":[{"given":"Haiyan","family":"Jiang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew","family":"Orr","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Duane L.","family":"Guernsey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Johane","family":"Robitaille","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"G\u00e9raldine","family":"Asselin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark E.","family":"Samuels","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marie-Pierre","family":"Dub\u00e9","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2009,4,28]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1038\/nature06258","article-title":"A second generation human haplotype map of over 3.1 million SNPs.","volume":"449","year":"2007","journal-title":"Nature"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"86","DOI":"10.1093\/bioinformatics\/btm552","article-title":"Identification of linked regions using high-density SNP genotype data in linkage analysis.","volume":"24","author":"G Lin","year":"2008","journal-title":"Bioinformatics"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1089\/10665270152530863","article-title":"Inference of haplotypes from samples of diploid populations: complexity and algorithms.","volume":"8","author":"D Gusfield","year":"2001","journal-title":"J Comput Biol"},{"key":"ref4","first-page":"182","article-title":"SNPs problems, algorithms and complexity, European symposium on algorithms. Proceedings of the European Symposium on Algorithms (ESA-2001), Lecture Notes in Computer Science, 2161.","author":"G Lancia","year":"2001","journal-title":"Springer-Verlag"},{"key":"ref5","first-page":"921","article-title":"Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population.","volume":"12","author":"L Excoffier","year":"1995","journal-title":"Mol Biol Evol"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1086\/303069","article-title":"Accuracy of haplotype frequency estimation for biallelic loci, via the expectation\u2013maximization algorithm for unphased diploid genotype data.","volume":"67","author":"D Fallin","year":"2000","journal-title":"Am J Hum Genet"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1093\/oxfordjournals.jhered.a111613","article-title":"Haplo: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.","volume":"86","author":"M Hawley","year":"1995","journal-title":"J Heredity"},{"key":"ref8","first-page":"799","article-title":"An E-M algorithm and testing strategy for multiple-locus haplotypes.","volume":"56","author":"J Long","year":"1995","journal-title":"Am J Hum Genet"},{"key":"ref9","doi-asserted-by":"crossref","DOI":"10.1145\/565196.565218","article-title":"Haplotyping as perfect phylogeny: conceptual framework and efficient solutions (extended abstract).","author":"D Gusfield","year":"2002"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"1842","DOI":"10.1093\/bioinformatics\/bth149","article-title":"Haplotype reconstruction from genotype data using Imperfect Phylogeny.","volume":"20","author":"E Halperin","year":"2004","journal-title":"Bioinformatics"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"978","DOI":"10.1086\/319501","article-title":"A new statistical method for haplotype reconstruction from population data.","volume":"68","author":"M Stephens","year":"2001","journal-title":"Am J Hum Genet"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"1242","DOI":"10.1086\/344207","article-title":"Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.","volume":"71","author":"T Niu","year":"2002","journal-title":"Am J Hum Genet"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1038\/ng1295-402","article-title":"The VITESSE algorithm for rapid exact multilocus linkage analysis via genotype set-recoding and fuzzy inheritance.","volume":"11","author":"JR O'Connell","year":"1995","journal-title":"Nat Genet"},{"key":"ref14","first-page":"1347","article-title":"Parametric and Nonparametric Linkage Analysis: A Unified Multipoint Approach.","volume":"58","author":"L Kruglyak","year":"1996","journal-title":"Am J Hum Genet"},{"key":"ref15","first-page":"1323","article-title":"Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker sharing statistics.","volume":"58","author":"E Sobel","year":"1996","journal-title":"Am J Hum Genet"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1090","DOI":"10.1086\/518176","article-title":"Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.","volume":"80","author":"H Miyazawa","year":"2007","journal-title":"Am J Hum Genet"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"e685","DOI":"10.1371\/journal.pone.0000685","article-title":"Mutations in the UBIAD1 gene encoding a potential prenyltransferase are causal for Schnyder crystalline corneal dystrophy.","volume":"2","author":"A Orr","year":"2007","journal-title":"PLoS ONE"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"5007","DOI":"10.1167\/iovs.07-0845","article-title":"Mutations in the UBIAD1 gene on chromosome short arm 1, region 36, cause Schnyder crystalline corneal dystrophy.","volume":"48","author":"JS Weiss","year":"2007","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"ref19","first-page":"1777","article-title":"Identification of mutations in UBIAD1 following exclusion of coding mutations in the chromosome 1p36 locus for Schnyder crystalline corneal dystrophy.","volume":"13","author":"VS Yellore","year":"2007","journal-title":"Mol Vis"},{"key":"ref20"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"594","DOI":"10.1007\/s00439-004-1110-1","article-title":"Fine mapping of the Schnyder&apos;s crystalline corneal dystrophy locus.","volume":"114","author":"V Theendakara","year":"2004","journal-title":"Hum Genet"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1161","DOI":"10.1086\/302566","article-title":"Transmission\/disequilibrium tests for extended marker haplotypes.","volume":"65","author":"DG Clayton","year":"1999","journal-title":"Am J Hum Genet"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1086\/302782","article-title":"Family-based tests of association and linkage that use unaffected sibs, covariates, and interactions.","volume":"66","author":"KL Lunetta","year":"2000","journal-title":"Am J Hum Genet"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1038\/nrg2344","article-title":"Genome-wide association studies for complex traits: consensus, uncertainty and challenges.","volume":"9","author":"MI McCarthy","year":"2008","journal-title":"Nat Rev Genet"},{"key":"ref25","first-page":"252","article-title":"Faster sequential genetic linkage computations.","volume":"53","author":"RW Cottingham Jr","year":"1993","journal-title":"Am J Hum Genet"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1159\/000154222","article-title":"Avoiding recomputation in linkage analysis.","volume":"44","author":"AA Schaffer","year":"1994","journal-title":"Hum Hered"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1159\/000053366","article-title":"Multipoint estimation of identity-by-descent probabilities at arbitrary positions among marker loci on general pedigrees.","volume":"52","author":"E Sobel","year":"2001","journal-title":"Human Heredity"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1086\/338920","article-title":"Detection and integration of genotyping errors in statistical genetics.","volume":"70","author":"E Sobel","year":"2002","journal-title":"Am J Hum Genet"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1093\/bioinformatics\/bth457","article-title":"Haploview: analysis and visualization of LD and haplotype maps.","volume":"21","author":"JC Barrett","year":"2005","journal-title":"Bioinformatics"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1038\/ng709","article-title":"Mutations in the gene encoding epsilon-sarcoglycan cause myoclonus-dystonia syndrome.","volume":"29","author":"A Zimprich","year":"2001","journal-title":"Nat Genet"},{"key":"ref31","first-page":"1314","article-title":"A major locus for myoclonus-dystonia maps to chromosome 7q in eight families. Am J Hum Genet.","volume":"67","author":"C Klein","year":"2000"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1038\/ng0997-40","article-title":"The early-onset torsion dystonia gene (DYT1) encodes an ATP-binding protein.","volume":"17","author":"LJ Ozelius","year":"1997","journal-title":"Nature Genet"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1016\/j.ygeno.2004.05.003","article-title":"Estimation of genotype error rate using samples with pedigree information\u2013an application on the GeneChip Mapping 10K array.","volume":"84","author":"K Hao","year":"2004","journal-title":"Genomics"},{"key":"ref34","article-title":"Whole-genome DNA analysis: humanhap550-Duo and humanhap550+ genotyping beadchips."},{"key":"ref35","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1159\/000022846","article-title":"True pedigree errors more frequent than apparent errors for single nucleotide polymorphisms.","volume":"49","author":"D Gordon","year":"1999","journal-title":"Hum Hered"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1159\/000068836","article-title":"Detection rates for genotyping errors in SNPs using the trio design.","volume":"54","author":"F Geller","year":"2002","journal-title":"Hum Hered"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"847","DOI":"10.1038\/nrg1707","article-title":"Genotyping errors: causes, consequences and solutions.","volume":"6","author":"F Pompanon","year":"2005","journal-title":"Nat Rev Genet"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"604","DOI":"10.1016\/S0888-7543(05)80158-2","article-title":"Systematic detection of errors in genetic linkage data.","volume":"14","author":"SE Lincoln","year":"1992","journal-title":"Genomics"},{"key":"ref39","first-page":"225","article-title":"Error detection for genetic data, using likelihood methods.","volume":"58","author":"MG Ehm","year":"1996","journal-title":"Am J Hum Genet"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"616","DOI":"10.1038\/sj.ejhg.5200855","article-title":"The impact of genotyping error on haplotype reconstruction and frequency estimation.","volume":"10","author":"KM Kirk","year":"2002","journal-title":"Eur J Hum Genet"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"2556","DOI":"10.1093\/bioinformatics\/bti364","article-title":"Mega2: data-handling for facilitating genetic linkage and association analyses.","volume":"21","author":"N Mukhopadhyay","year":"2005","journal-title":"Bioinformatics"},{"key":"ref42","article-title":"R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.","year":"2005"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0005280","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,9]],"date-time":"2020-05-09T17:20:33Z","timestamp":1589044833000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0005280"}},"subtitle":[],"editor":[{"given":"Amanda Ewart","family":"Toland","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2009,4,28]]},"references-count":42,"journal-issue":{"issue":"4","published-online":{"date-parts":[[2009,4,28]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0005280","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,4,28]]}}}