{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,7,11]],"date-time":"2022-07-11T23:50:21Z","timestamp":1657583421224},"reference-count":53,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2012,6,1]],"date-time":"2012-06-01T00:00:00Z","timestamp":1338508800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0037762","type":"journal-article","created":{"date-parts":[[2012,6,1]],"date-time":"2012-06-01T21:03:09Z","timestamp":1338584589000},"page":"e37762","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":9,"title":["Genomic Islands as a Marker to Differentiate between Clinical and Environmental Burkholderia pseudomallei"],"prefix":"10.1371","volume":"7","author":[{"given":"Thanatchaporn","family":"Bartpho","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thidathip","family":"Wongsurawat","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Surasakdi","family":"Wongratanacheewin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adel M.","family":"Talaat","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nitsara","family":"Karoonuthaisiri","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rasana W.","family":"Sermswan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2012,6,1]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1183\/09031936.03.00006203","article-title":"Melioidosis: an important cause of pneumonia in residents of and travellers returned from endemic regions.","volume":"22","author":"BJ Currie","year":"2003","journal-title":"Eur Respir J"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"S5","DOI":"10.1016\/S0035-9203(08)70003-8","article-title":"Soil physicochemical properties related to the presence of <italic>Burkholderia pseudomallei<\/italic>.","volume":"102","author":"S Palasatien","year":"2008","journal-title":"Trans R Soc Trop Med Hyg"},{"key":"ref3","article-title":"The use of animal infection models to study the pathogenesis of melioidosis and glanders.","volume":"484\u2013485","author":"DE Woods","year":"2002","journal-title":"Trends Microbiol 10: 483\u2013484; discussion"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"890","DOI":"10.1093\/infdis\/159.5.890","article-title":"Melioidosis: a major cause of community-acquired septicemia in northeastern Thailand.","volume":"159","author":"W Chaowagul","year":"1989","journal-title":"J Infect Dis"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"1715","DOI":"10.1016\/S0140-6736(03)13374-0","article-title":"Melioidosis.","volume":"361","author":"NJ White","year":"2003","journal-title":"Lancet"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1128\/CMR.18.2.383-416.2005","article-title":"Melioidosis: epidemiology, pathophysiology, and management.","volume":"18","author":"AC Cheng","year":"2005","journal-title":"Clin Microbiol Rev"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"2553","DOI":"10.1128\/JCM.00629-06","article-title":"Nonrandom distribution of <italic>Burkholderia pseudomallei<\/italic> clones in relation to geographical location and virulence.","volume":"44","author":"M Vesaratchavest","year":"2006","journal-title":"J Clin Microbiol"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1016\/S0001-706X(01)00176-0","article-title":"Ribotyping of <italic>Burkholderia pseudomallei<\/italic> from clinical and soil isolates in Thailand.","volume":"80","author":"RW Sermswan","year":"2001","journal-title":"Acta Trop"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1016\/S1286-4579(01)01417-4","article-title":"<italic>Burkholderia pseudomallei<\/italic> virulence: definition, stability and association with clonality.","volume":"3","author":"GC Ulett","year":"2001","journal-title":"Microbes Infect"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"e1000178","DOI":"10.1371\/journal.ppat.1000178","article-title":"The core and accessory genomes of <italic>Burkholderia pseudomallei<\/italic>: implications for human melioidosis.","volume":"4","author":"SH Sim","year":"2008","journal-title":"PLoS Pathog"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1016\/S1369-5274(00)00250-2","article-title":"Whole genome plasticity in pathogenic bacteria.","volume":"4","author":"U Dobrindt","year":"2001","journal-title":"Curr Opin Microbiol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"14240","DOI":"10.1073\/pnas.0403302101","article-title":"Genomic plasticity of the causative agent of melioidosis, <italic>Burkholderia pseudomallei<\/italic>.","volume":"101","author":"MT Holden","year":"2004","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"566","DOI":"10.1186\/1471-2164-9-566","article-title":"Genomic islands from five strains of <italic>Burkholderia pseudomallei<\/italic>.","volume":"9","author":"A Tuanyok","year":"2008","journal-title":"BMC Genomics"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1093\/embo-reports\/kve097","article-title":"Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes.","volume":"2","author":"J Hacker","year":"2001","journal-title":"EMBO Rep"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1038\/nrmicro884","article-title":"Genomic islands in pathogenic and environmental microorganisms.","volume":"2","author":"U Dobrindt","year":"2004","journal-title":"Nat Rev Microbiol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1038\/nrmicro1889","article-title":"Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention.","volume":"6","author":"N Ahmed","year":"2008","journal-title":"Nat Rev Microbiol"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1831","DOI":"10.1128\/JB.185.6.1831-1840.2003","article-title":"Analysis of genome plasticity in pathogenic and commensal <italic>Escherichia coli<\/italic> isolates by use of DNA arrays.","volume":"185","author":"U Dobrindt","year":"2003","journal-title":"J Bacteriol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1186\/1471-2164-9-190","article-title":"<italic>Burkholderia pseudomallei<\/italic> genome plasticity associated with genomic island variation.","volume":"9","author":"S Tumapa","year":"2008","journal-title":"BMC Genomics"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"5040","DOI":"10.1128\/JB.186.15.5040-5051.2004","article-title":"Comparative whole-genome hybridization reveals genomic islands in Brucella species.","volume":"186","author":"G Rajashekara","year":"2004","journal-title":"J Bacteriol"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1111\/j.1365-2958.2003.03920.x","article-title":"Genome plasticity in Streptomyces: identification of 1 Mb TIRs in the <italic>S. coelicolor<\/italic> A3(2) chromosome.","volume":"51","author":"D Weaver","year":"2004","journal-title":"Mol Microbiol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1186\/1471-2164-8-229","article-title":"Comparative genomic hybridizations reveal absence of large Streptomyces coelicolor genomic islands in <italic>Streptomyces lividans<\/italic>.","volume":"8","author":"KP Jayapal","year":"2007","journal-title":"BMC Genomics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"711","DOI":"10.1128\/JB.188.2.711-723.2006","article-title":"Whole-genome plasticity among <italic>Mycobacterium avium<\/italic> subspecies: insights from comparative genomic hybridizations.","volume":"188","author":"CW Wu","year":"2006","journal-title":"J Bacteriol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"4172","DOI":"10.1128\/IAI.72.7.4172-4187.2004","article-title":"Contribution of gene loss to the pathogenic evolution of <italic>Burkholderia pseudomallei<\/italic> and <italic>Burkholderia mallei<\/italic>.","volume":"72","author":"RA Moore","year":"2004","journal-title":"Infect Immun"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"2295","DOI":"10.1101\/gr.1608904","article-title":"Patterns of large-scale genomic variation in virulent and avirulent <italic>Burkholderia<\/italic> species.","volume":"14","author":"C Ong","year":"2004","journal-title":"Genome Res"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1186\/1471-2164-6-174","article-title":"Bacterial genome adaptation to niches: divergence of the potential virulence genes in three <italic>Burkholderia<\/italic> species of different survival strategies.","volume":"6","author":"HS Kim","year":"2005","journal-title":"BMC Genomics"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"504","DOI":"10.1186\/1471-2164-11-504","article-title":"Characterization of a novel Lactobacillus species closely related to <italic>Lactobacillus johnsonii<\/italic> using a combination of molecular and comparative genomics methods.","volume":"11","author":"LA Sarmiento-Rubiano","year":"2010","journal-title":"BMC Genomics"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1111\/j.1574-6976.2008.00136.x","article-title":"Genomic islands: tools of bacterial horizontal gene transfer and evolution.","volume":"33","author":"M Juhas","year":"2009","journal-title":"FEMS Microbiol Rev"},{"key":"ref28"},{"key":"ref29"},{"key":"ref30"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1186\/1471-2180-7-19","article-title":"<italic>Burkholderia<\/italic> Hep_Hag autotransporter (BuHA) proteins elicit a strong antibody response during experimental glanders but not human melioidosis.","volume":"7","author":"R Tiyawisutsri","year":"2007","journal-title":"BMC Microbiol"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"7008","DOI":"10.1128\/JB.185.23.7008-7014.2003","article-title":"Role of the stationary growth phase sigma factor RpoS of <italic>Burkholderia pseudomalle<\/italic>i in response to physiological stress conditions.","volume":"185","author":"B Subsin","year":"2003","journal-title":"J Bacteriol"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"2689","DOI":"10.1099\/mic.0.2007\/006585-0","article-title":"In vivo expression technology identifies a type VI secretion system locus in <italic>Burkholderia pseudomallei<\/italic> that is induced upon invasion of macrophages.","volume":"153","author":"G Shalom","year":"2007","journal-title":"Microbiology"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1016\/S0378-1119(02)00854-5","article-title":"The <italic>Burkholderia pseudomallei<\/italic> oxyR gene: expression analysis and mutant characterization.","volume":"296","author":"S Loprasert","year":"2002","journal-title":"Gene"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"43098","DOI":"10.1074\/jbc.M406374200","article-title":"Catalase-peroxidases (KatG) exhibit NADH oxidase activity.","volume":"279","author":"R Singh","year":"2004","journal-title":"J Biol Chem"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"1907","DOI":"10.1099\/mic.0.2006\/003004-0","article-title":"Characterization of two distinct phospholipase C enzymes from <italic>Burkholderia pseudomallei<\/italic>.","volume":"153","author":"S Korbsrisate","year":"2007","journal-title":"Microbiology"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/j.micpath.2009.06.003","article-title":"Comparative analysis of extracellular enzymes and virulence exhibited by <italic>Burkholderia pseudomallei<\/italic> from different sources.","volume":"47","author":"KM Vellasamy","year":"2009","journal-title":"Microb Pathog"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1111\/j.1574-6968.2008.01216.x","article-title":"The rpoE operon regulates heat stress response in <italic>Burkholderia pseudomallei.<\/italic>","volume":"284","author":"M Vanaporn","year":"2008","journal-title":"FEMS Microbiol Lett"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"785","DOI":"10.1128\/JB.187.2.785-790.2005","article-title":"The BpsIR quorum-sensing system of <italic>Burkholderia pseudomallei<\/italic>.","volume":"187","author":"Y Song","year":"2005","journal-title":"J Bacteriol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1007\/s00203-003-0621-9","article-title":"Compensatory increase in ahpC gene expression and its role in protecting <italic>Burkholderia pseudomallei<\/italic> against reactive nitrogen intermediates.","volume":"180","author":"S Loprasert","year":"2003","journal-title":"Arch Microbiol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1099\/jmm.0.47043-0","article-title":"Polysaccharides and virulence of <italic>Burkholderia pseudomallei<\/italic>.","volume":"56","author":"M Sarkar-Tyson","year":"2007","journal-title":"J Med Microbiol"},{"key":"ref42","first-page":"143","article-title":"Single gene target bacterial identification. groEL gene sequencing for discriminating clinical isolates of <italic>Burkholderia pseudomallei<\/italic> and <italic>Burkholderia thailandensis<\/italic>.","volume":"44","author":"PC Woo","year":"2002","journal-title":"Diagn Microbiol Infect Dis"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"735","DOI":"10.4269\/ajtmh.1999.61.735","article-title":"Short report: evaluation of a monoclonal antibody-based latex agglutination test for rapid diagnosis of septicemic melioidosis.","volume":"61","author":"N Samosornsuk","year":"1999","journal-title":"Am J Trop Med Hyg"},{"key":"ref44"},{"key":"ref45","first-page":"496","article-title":"Microarray data normalization and transformation.","author":"J Quackenbush","year":"2002"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"e15","DOI":"10.1093\/nar\/30.4.e15","article-title":"Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.","volume":"30","author":"YH Yang","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1186\/1471-2105-5-177","article-title":"Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.","volume":"5","author":"H Bengtsson","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1186\/1471-2105-7-100","article-title":"Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method.","volume":"7","author":"H Bengtsson","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"ref49"},{"key":"ref50"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1093\/nar\/30.1.207","article-title":"Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.","volume":"30","author":"R Edgar","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"ref52","author":"GSE1 GEO Series accession number","year":"9558"},{"key":"ref53","article-title":"Brock biology of microorganisms.","author":"MT Madigan","year":"2003"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0037762","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,29]],"date-time":"2019-06-29T09:29:06Z","timestamp":1561800546000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0037762"}},"subtitle":[],"editor":[{"given":"Olivier","family":"Neyrolles","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2012,6,1]]},"references-count":53,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2012,6,1]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0037762","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,6,1]]}}}