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Shijiazhuang: Hebei Science and Technology Press."},{"key":"ref15","first-page":"687","article-title":"A suggestion to improve the chronology of Quaternary glaciations in China","volume":"24","author":"YF Shi","year":"2002","journal-title":"J Glaciol Geocryol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"e52089","DOI":"10.1371\/journal.pone.0052089","article-title":"Phylogeographic pattern of the striped snakehead, <italic>Channa striata<\/italic> in Sundaland: ancient river connectivity, geographical and anthropogenic signatures","volume":"7","author":"MP Tan","year":"2012","journal-title":"PLoS One"},{"key":"ref17","unstructured":"Zhang RZ (1999) Zoogeography of China. Beijing: Science Press."},{"key":"ref18","doi-asserted-by":"crossref","unstructured":"G\u00fcnther ACLG (1864) The Reptiles of British India. 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Beijing: Science Press."},{"key":"ref22","first-page":"1354","article-title":"An overview of geographic variation in the life history traits of the tropical agamid lizard, <italic>Calotes versicolor<\/italic>","volume":"91","author":"RS Radder","year":"2006","journal-title":"Curr Sci"},{"key":"ref23","first-page":"35","article-title":"The establishment of the crested tree lizard, <italic>Calotes versicolor<\/italic> (Daudin, 1802) (Squamata: Agamidae) in Seychelles","volume":"12","author":"P Matyot","year":"2004","journal-title":"Phelsuma"},{"key":"ref24","first-page":"35","article-title":"Systematics of the garden lizards, <italic>Calotes versicolor<\/italic> group (Reptilia, Squamata, Agamidae), in Myanmar: Central dry zone populations","volume":"57","author":"GR Zug","year":"2006","journal-title":"Proc Calif Acad Sci"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"4692","DOI":"10.1093\/nar\/25.22.4692","article-title":"Universal and rapid salt-extracted of high quality genomic DNA for PCR-based techniques","volume":"25","author":"SM Aljanabi","year":"1997","journal-title":"Nucl Acids Res"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1093\/bioinformatics\/btp187","article-title":"DnaSP v5: a software for comprehensive analysis of DNA polymorphism data","volume":"25","author":"P Librado","year":"2009","journal-title":"Bioinformatics"},{"key":"ref27","doi-asserted-by":"crossref","unstructured":"Nei M (1987) Molecular Evolutionary Genetics. 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