{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,12]],"date-time":"2025-12-12T13:01:41Z","timestamp":1765544501671},"reference-count":92,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2013,9,3]],"date-time":"2013-09-03T00:00:00Z","timestamp":1378166400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0074803","type":"journal-article","created":{"date-parts":[[2013,9,3]],"date-time":"2013-09-03T21:11:08Z","timestamp":1378242668000},"page":"e74803","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":32,"title":["Combining Phylogenetic and Syntenic Analyses for Understanding the Evolution of TCP ECE Genes in Eudicots"],"prefix":"10.1371","volume":"8","author":[{"given":"H\u00e9l\u00e8ne L.","family":"Citerne","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martine","family":"Le Guilloux","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julie","family":"Sannier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sophie","family":"Nadot","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Catherine","family":"Damerval","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2013,9,3]]},"reference":[{"key":"ref1","article-title":"Phylogeny and Evolution of Angiosperms","author":"DE Soltis","year":"2005"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"704","DOI":"10.3732\/ajb.1000404","article-title":"Angiosperm phylogeny: 17 genes, 640 taxa","volume":"98","author":"DE Soltis","year":"2011","journal-title":"Am J Bot"},{"key":"ref3","author":"PD Cantino"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1146\/annurev.ecolsys.110308.120203","article-title":"Flower evolution: the origin and subsequent diversification of the angiosperm flower","volume":"40","author":"CD Specht","year":"2009","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"461","DOI":"10.3732\/ajb.90.3.461","article-title":"Gunnerales are sister to other core eudicots: implications for the evolution of pentamery","volume":"90","author":"DE Soltis","year":"2003","journal-title":"Am J Bot"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"S3","DOI":"10.1086\/314211","article-title":"Symmetry in flowers: Diversity and evolution","volume":"160","author":"PK Endress","year":"1999","journal-title":"Int J Plant Sci"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0065-2296(06)44001-5","article-title":"Angiosperm floral evolution, morphological developmental framework","volume":"44","author":"PK Endress","year":"2006","journal-title":"Adv Bot Res"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1146\/annurev.ecolsys.29.1.345","article-title":"Floral symmetry and its role in plant-pollinator systems: Terminology, distribution, and hypotheses","volume":"29","author":"PR Neal","year":"1998","journal-title":"Annu Rev Ecol Syst"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1098\/rspb.2003.2644","article-title":"Floral symmetry affects speciation rates in angiosperms","volume":"271","author":"RD Sargent","year":"2004","journal-title":"P Roy Soc B- Biol Sci"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/S0065-2296(10)54003-5","article-title":"The evolution of floral symmetry","volume":"54","author":"HC Citerne","year":"2010","journal-title":"Adv Bot Res"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1093\/aob\/mcm041","article-title":"Evolution of perianth and stamen characteristics with respect to floral symmetry in Ranunculales","volume":"100","author":"C Damerval","year":"2007","journal-title":"Ann Bot Lond"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1038\/383794a0","article-title":"Origin of floral asymmetry in <italic>Antirrhinum<\/italic>","volume":"383","author":"D Luo","year":"1996","journal-title":"Nature"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1016\/S0092-8674(00)81523-8","article-title":"Control of organ asymmetry in flowers of <italic>Antirrhinum<\/italic>","volume":"99","author":"D Luo","year":"1999","journal-title":"Cell"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"12814","DOI":"10.1073\/pnas.1835725100","article-title":"Differential regulation of symmetry genes and the evolution of floral morphologies","volume":"100","author":"LC Hileman","year":"2003","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"751","DOI":"10.1111\/j.1469-8137.2009.02794.x","article-title":"Conservation and diversification of the symmetry developmental program among close relatives of snapdragon with divergent floral morphologies","volume":"182","author":"JC Preston","year":"2009","journal-title":"New Phytol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"2343","DOI":"10.1073\/pnas.1011361108","article-title":"Gradual disintegration of the floral symmetry gene network is implicated in the evolution of a wind-pollination syndrome","volume":"108","author":"JC Preston","year":"2011","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"532","DOI":"10.1111\/j.1469-8137.2008.02384.x","article-title":"Altered expression patterns of TCP and MYB genes relating to the floral developmental transition from initial zygomorphy to actinomorphy in <italic>Bournea<\/italic> (Gesneriaceae)","volume":"178","author":"XR Zhou","year":"2008","journal-title":"New Phytol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1186\/1471-2148-9-244","article-title":"Expressions of ECE-CYC2 clade genes relating to abortion of both dorsal and ventral stamens in <italic>Opithandra<\/italic> (Gesneriaceae)","volume":"9","author":"CF Song","year":"2009","journal-title":"BMC Evol Biol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"9117","DOI":"10.1073\/pnas.0801359105","article-title":"A TCP domain transcription factor controls flower type specification along the radial axis of the <italic>Gerbera<\/italic> (Asteraceae) inflorescence","volume":"105","author":"SK Broholm","year":"2008","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.1126\/science.1164371","article-title":"Regulatory genes control a key morphological and ecological trait transferred between species","volume":"322","author":"M Kim","year":"2008","journal-title":"Science"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"1521","DOI":"10.1007\/s10709-012-9652-y","article-title":"A transposon-mediate inactivation of a <italic>CYCLOIDEA<\/italic>-like gene originates polysymmetric and androgynous ray flowers in <italic>Helianthus annuus<\/italic>","volume":"139","author":"M Fambrini","year":"2011","journal-title":"Genetica"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"e1002628","DOI":"10.1371\/journal.pgen.1002628","article-title":"Genetic analysis of floral symmetry in Van Gogh\u2019s sunflowers reveals independent recruitment of <italic>CYCLOIDEA<\/italic> genes in the Asteraceae","volume":"83","author":"MA Chapman","year":"2012","journal-title":"PLOS Genet"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"1155","DOI":"10.1093\/molbev\/msr283","article-title":"Evolution and diversification of the CYC\/TB1 gene family in Asteraceae \u2013 a comparative study in <italic>Gerbera<\/italic> (Mutisieae) and sunflower (Heliantheae)","volume":"29","author":"S T\u00e4htiharju","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"1521","DOI":"10.1007\/s10709-012-9652-y","article-title":"A transposon-mediate inactivation of a <italic>CYCLOIDEA<\/italic>-like gene originates polysymmetric and androgynous ray flowers in <italic>Helianthus annuus<\/italic>","volume":"139","author":"M Fambrini","year":"2011","journal-title":"Genetica"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"1155","DOI":"10.1093\/molbev\/msr283","article-title":"Evolution and diversification of the CYC\/TB1 gene family in Asteraceae - a comparative study in <italic>Gerbera<\/italic> (Mutisieae) and sunflower (Heliantheae)","volume":"29","author":"S T\u00e4htiharju","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"1521","DOI":"10.1093\/aob\/mcr049","article-title":"Diversification of <italic>CYCLOIDEA<\/italic> expression in the evolution of bilateral flower symmetry in Caprifoliaceae and <italic>Lonicera<\/italic> (Dipsacales)","volume":"107","author":"DG Howarth","year":"2011","journal-title":"Ann Bot Lond"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"12017","DOI":"10.1073\/pnas.0600986103","article-title":"An apparent reversal in floral symmetry in the legume <italic>Cadia<\/italic> is a homeotic transformation","volume":"103","author":"HL Citerne","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"4970","DOI":"10.1073\/pnas.0600681103","article-title":"Control of petal shape and floral zygomorphy in <italic>Lotus japonicus<\/italic>","volume":"103","author":"X Feng","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"10414","DOI":"10.1073\/pnas.0803291105","article-title":"Genetic control of floral zygomorphy in pea (<italic>Pisum sativum<\/italic> L.)","volume":"105","author":"Z Wang","year":"2008","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref30","article-title":"Functional diversity of <italic>CYCLOIDEA<\/italic>-like TCP genes in the control of zygomorphic flower development in <italic>Lotus japonicus<\/italic>.J","author":"S Xu","year":"2012","journal-title":"J Integr Plant Biol"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"16714","DOI":"10.1073\/pnas.0705338104","article-title":"Control of corolla monosymmetry in the Brassicaceae Iberis amara","volume":"104","author":"A Busch","year":"2007","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"1241","DOI":"10.1093\/molbev\/msr297","article-title":"Corolla monosymmetry: evolution of a morphological novelty in the Brassicaceae family","volume":"29","author":"A Busch","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"6388","DOI":"10.1073\/pnas.0910155107","article-title":"Floral symmetry genes and the origin and maintenance of zygomorphy in a plant-pollinator mutualism","volume":"107","author":"W Zhang","year":"2010","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"1050","DOI":"10.1016\/S0960-9822(01)00295-0","article-title":"Ancient asymmetries in the evolution of flowers","volume":"11","author":"P Cubas","year":"2001","journal-title":"Curr Biol"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1104\/pp.108.128231","article-title":"<italic>RETARDED PALEA1<\/italic> controls palea development and floral zygomorphy in rice","volume":"149","author":"Z Yuan","year":"2009","journal-title":"Plant Physiol"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"227","DOI":"10.3732\/ajb.1000246","article-title":"Changes in expression pattern of the teosinte branched1-like genes in the Zingiberales provide a mechanism for evolutionary shifts in symmetry across the order","volume":"98","author":"ME Bartlett","year":"2011","journal-title":"Am J Bot"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1186\/2041-9139-3-6","article-title":"Parallel evolution of TCP and B-class genes in Commelinaceae flower bilateral symmetry","volume":"3","author":"JC Preston","year":"2012","journal-title":"Evodevo"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"680","DOI":"10.1055\/s-2006-924286","article-title":"Diversification of <italic>CYCLOIDEA<\/italic>-like TCP genes in the basal eudicot families Fumariaceae and Papaveraceae <italic>s.str<\/italic>","volume":"8","author":"A K\u00f6lsch","year":"2006","journal-title":"Plant Biol"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1104\/pp.106.090324","article-title":"Diversity and evolution of <italic>CYCLOIDEA<\/italic>-like TCP genes in relation to flower development in Papaveraceae","volume":"143","author":"C Damerval","year":"2007","journal-title":"Plant Physiol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"391","DOI":"10.3732\/ajb.1200376","article-title":"Asymmetric morphogenetic cues along the transverse plane: shift from disymmetry to zygomorphy in the flower of Fumarioideae","volume":"100","author":"C Damerval","year":"2013","journal-title":"Am J Bot"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1038\/nature01521","article-title":"Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events","volume":"422","author":"JE Bowers","year":"2003","journal-title":"Nature"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1038\/nature06148","article-title":"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla","volume":"449","author":"O Jaillon","year":"2007","journal-title":"Nature"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1007\/s00438-010-0534-7","article-title":"Comparative sequence analyses indicate that <italic>Coffea<\/italic> (Asterids) and <italic>Vitis<\/italic> (Rosids) derive from the same paleo-hexaploid ancestral genome","volume":"283","author":"A Cenci","year":"2010","journal-title":"Mol Genet Genomics"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"R3","DOI":"10.1186\/gb-2012-13-1-r3","article-title":"A genome triplication associated with early diversification of the core eudicots","volume":"13","author":"Y Jiao","year":"2012","journal-title":"Genome Biol"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"3793","DOI":"10.1093\/molbev\/mss183","article-title":"Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification","volume":"29","author":"D Vekemans","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"1245","DOI":"10.1093\/molbev\/msp051","article-title":"Duplications and expression of <italic>DIVARICATA<\/italic>-like genes in Dipsacales","volume":"26","author":"DG Howarth","year":"2009","journal-title":"Mol Biol Evol"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"1387","DOI":"10.1242\/dev.124.7.1387","article-title":"Genetic control of flower shape in <italic>Antirrhinum majus<\/italic>","volume":"124","author":"J Almeida","year":"1997","journal-title":"Development"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1387\/ijdb.041967ja","article-title":"Flower symmetry and shape in <italic>Antirrhinum<\/italic>","volume":"49","author":"J Almeida","year":"2005","journal-title":"Int J Dev Biol"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"9101","DOI":"10.1073\/pnas.0602827103","article-title":"Phylogenetic analysis of the &quot;ECE&quot; (CYC\/TB1) clade reveals duplications predating the core eudicots","volume":"103","author":"DG Howarth","year":"2006","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1046\/j.1365-313X.1999.00444.x","article-title":"The TCP domain: a motif found in proteins regulating plant growth and development","volume":"18","author":"P Cubas","year":"1999","journal-title":"Plant J"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/j.tplants.2009.11.003","article-title":"TCP genes: a family snapshot ten years later","volume":"15","author":"M Mart\u00edn-Trillo","year":"2009","journal-title":"Trends Plant Sci"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"1927","DOI":"10.1093\/genetics\/162.4.1927","article-title":"Expression patterns and mutant phenotype of <italic>teosinte branched1<\/italic> correlate with growth suppression in maize and teosinte","volume":"162","author":"L Hubbard","year":"2002","journal-title":"Genetics"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1046\/j.1365-313X.2003.01648.x","article-title":"The <italic>OsTB1<\/italic> gene negatively regulates lateral branching in rice","volume":"33","author":"T Takeda","year":"2003","journal-title":"Plant J"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"458","DOI":"10.1105\/tpc.106.048934","article-title":"Arabidopsis <italic>BRANCHED1<\/italic> acts as an integrator of branching signals within axillary buds","volume":"19","author":"JA Aguilar-Mart\u00ednez","year":"2007","journal-title":"Plant Cell"},{"key":"ref55","first-page":"11","article-title":"A rapid DNA isolation procedure for small amounts of fresh leaf tissue","volume":"19","author":"JJ Doyle","year":"1987","journal-title":"Phytochem Bull"},{"key":"ref56","first-page":"95","article-title":"BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT","volume":"41","author":"TA Hall","year":"1999","journal-title":"Nucl Acid S"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1093\/genetics\/120.3.621","article-title":"Genetic applications of inverse polymerase chain reactions","volume":"120","author":"H Ochman","year":"1988","journal-title":"Genetics"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"1260","DOI":"10.1093\/molbev\/msn001","article-title":"Positive selection and expression divergence following gene duplication in the sunflower <italic>CYCLOIDEA<\/italic> gene family","volume":"25","author":"MA Chapman","year":"2008","journal-title":"Mol Biol Evol"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood","volume":"52","author":"S Guindon","year":"2003","journal-title":"Syst Biol"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML","volume":"59","author":"S Guindon","year":"2010","journal-title":"Syst Biol 3.0"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","article-title":"MRBAYES: Bayesian inference of phylogeny","volume":"17","author":"JP Huelsenbeck","year":"2001","journal-title":"Bioinformatics"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1093\/bioinformatics\/14.9.817","article-title":"Modeltest: testing the model of DNA substitution","volume":"14","author":"D Posada","year":"1998","journal-title":"Bioinformatics"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"RC Edgar","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1089\/106652700750050871","article-title":"NOTUNG: a program for dating gene duplications and optimizing gene family trees","volume":"7","author":"K Chen","year":"2000","journal-title":"J Comput Biol"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/molbev\/msm088","article-title":"PAML 4: a program package for phylogenetic analysis by maximum likelihood","volume":"24","author":"Z Yang","year":"2007","journal-title":"Mol Biol Evol"},{"key":"ref66","first-page":"1","article-title":"PAML: Phylogenetic analysis by Maximum likelihood v4.3, user\u2019s guide","author":"Z Yang","year":"2009"},{"key":"ref67","doi-asserted-by":"crossref","first-page":"1246","DOI":"10.1093\/bioinformatics\/17.12.1246","article-title":"CONSEL: for assessing the confidence of phylogenetic tree selection","volume":"17","author":"H Shimodaira","year":"2001","journal-title":"Bioinformatics"},{"key":"ref68","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1080\/10635150290069913","article-title":"An approximately unbiased test of phylogenetic tree selection","volume":"51","author":"H Shimodaira","year":"2002","journal-title":"Syst Biol"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1093\/oxfordjournals.molbev.a026201","article-title":"Multiple comparisons of log-likelihoods with applications to phylogenetic inference","volume":"16","author":"H Shimodaira","year":"1999","journal-title":"Mol Biol Evol"},{"key":"ref70","doi-asserted-by":"crossref","first-page":"D1152","DOI":"10.1093\/nar\/gks1104","article-title":"PGDD: a database of gene and genome duplication in plants","volume":"41","author":"TH Lee","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1038\/ng.2586","article-title":"The high-quality draft genome of peach (<italic>Prunus persica<\/italic>) identifies unique patterns of genetic diversity, domestication and genome evolution","volume":"45","author":"I Verde","year":"2013","journal-title":"Nat Genet"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"1533","DOI":"10.1093\/aob\/mcr059","article-title":"High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots","volume":"107","author":"M Mondrag\u00f3n-Palomino","year":"2011","journal-title":"Ann Bot Lond"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1086\/344694","article-title":"Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae","volume":"164","author":"EM Kramer","year":"2003","journal-title":"Int J Plant Sci"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"96","DOI":"10.3732\/ajb.0800038","article-title":"One size fits all? Molecular evidence for a commonly inherited petal identity program in the Ranunculales","volume":"96","author":"DA Rasmussen","year":"2009","journal-title":"Am J Bot"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1093\/genetics\/165.2.821","article-title":"Duplication and diversification in the APETALA1\/FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development","volume":"165","author":"A Litt","year":"2003","journal-title":"Genetics"},{"key":"ref76","doi-asserted-by":"crossref","first-page":"1011","DOI":"10.1534\/genetics.166.2.1011","article-title":"Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms","volume":"166","author":"EM Kramer","year":"2004","journal-title":"Genetics"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.ympev.2007.02.016","article-title":"Patterns of gene duplication and functional diversification during the evolution of the AP1\/SQUA subfamily of plant MADS-box genes","volume":"44","author":"H Shan","year":"2007","journal-title":"Mol Phylogenet Evol"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1093\/molbev\/msh044","article-title":"Evolution of the APETALA3 and PISTILLATA lineages of MADS-box-containing genes in the basal angiosperms","volume":"21","author":"GM Stellari","year":"2004","journal-title":"Mol Biol Evol"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"765","DOI":"10.1093\/genetics\/149.2.765","article-title":"Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages","volume":"149","author":"EM Kramer","year":"1998","journal-title":"Genetics"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"1598","DOI":"10.1093\/molbev\/msq044","article-title":"Interactions among proteins of floral MADS-box genes in basal eudicots: implications for the evolution of the regulatory network for flower development","volume":"27","author":"C Liu","year":"2010","journal-title":"Mol Biol Evol"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"R41","DOI":"10.1186\/gb-2013-14-5-r41","article-title":"Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)","volume":"14","author":"R Ming","year":"2013","journal-title":"Genome Biol"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"5454","DOI":"10.1073\/pnas.0501102102","article-title":"Modeling gene and genome duplications in eukaryotes","volume":"102","author":"S Maere","year":"2005","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"1531","DOI":"10.1093\/genetics\/151.4.1531","article-title":"Preservation of duplicate genes by complementary, degenerative mutations","volume":"151","author":"A Force","year":"1999","journal-title":"Genetics"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"738","DOI":"10.1101\/gr.4825606","article-title":"Widespread genome duplications throughout the history of flowering plants","volume":"16","author":"L Cui","year":"2006","journal-title":"Genome Res"},{"key":"ref85","author":"DE Soltis"},{"key":"ref86","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1146\/annurev-arplant-042809-112235","article-title":"Insights from the comparison of plant genome sequences","volume":"61","author":"AH Paterson","year":"2010","journal-title":"Annu Rev Plant Biol"},{"key":"ref87","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1749-6632.2011.06384.x","article-title":"Genome and gene duplications and gene expression divergence: a view from plants","volume":"1256","author":"Y Wang","year":"2012","journal-title":"Ann N Y Acad Sci"},{"key":"ref88","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/j.jgg.2012.02.008","article-title":"Gene duplication and the evolution of plant MADS-box transcription factors","volume":"39","author":"CA Airoldi","year":"2012","journal-title":"J Genet Genomics"},{"key":"ref89","doi-asserted-by":"crossref","first-page":"1737","DOI":"10.3732\/ajb.92.10.1737","article-title":"Dating phylogenetically basal eudicots using rbcL sequences and multiple fossil reference points","volume":"92","author":"CL Anderson","year":"2005","journal-title":"Am J Bot"},{"key":"ref90","doi-asserted-by":"crossref","first-page":"2651","DOI":"10.1093\/molbev\/msq156","article-title":"Tracing the evolution of the floral homeotic B- and C-function genes through genome synteny","volume":"27","author":"B Causier","year":"2010","journal-title":"Mol Biol Evol"},{"key":"ref91","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/nature11119","article-title":"The tomato genome sequence provides insights into fleshy fruit evolution","volume":"485","year":"2012","journal-title":"Nature"},{"key":"ref92","doi-asserted-by":"crossref","first-page":"e1000409","DOI":"10.1371\/journal.pbio.1000409","article-title":"Following tetraploidy in maize, a short deletion mechanism removedgenes preferentially from one of the two homologs","volume":"8","author":"MR Woodhouse","year":"2009","journal-title":"PLOS Biol"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0074803","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,5]],"date-time":"2022-03-05T13:08:43Z","timestamp":1646485723000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0074803"}},"subtitle":[],"editor":[{"given":"Miguel\u00a0A","family":"Blazquez","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2013,9,3]]},"references-count":92,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2013,9,3]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0074803","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,9,3]]}}}