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Geneva, World Health Organization, 27 June 2008; Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.who.int\/tb\/features_archive\/policy_statement.pdf\" xlink:type=\"simple\">http:\/\/www.who.int\/tb\/features_archive\/policy_statement.pdf<\/ext-link>. Accessed7 February 2014."},{"key":"ref2","unstructured":"Rapid implementation of the Xpert MTB\/RIF diagnostic test. WHO\/HTM\/TB\/2011.2. Geneva, World Health Organization, 2011. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/whqlibdoc.who.int\/publications\/2011\/9789241501569_eng.pdf\" xlink:type=\"simple\">http:\/\/whqlibdoc.who.int\/publications\/2011\/9789241501569_eng.pdf<\/ext-link>. Accessed 7 February 2014."},{"key":"ref3","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1054\/tuld.1998.0002","article-title":"Molecular genetic basis of antimicrobial agent resistance in <italic>Mycobacterium tuberculosis<\/italic>: 1998 update","volume":"79(1)","author":"S Ramaswamy","year":"1998","journal-title":"Tuber Lung Dis"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1016\/0140-6736(93)90417-F","article-title":"Detection of rifampicin-resistance mutations in <italic>Mycobacterium tuberculosis<\/italic>","volume":"341","author":"A Telenti","year":"1993","journal-title":"Lancet"},{"key":"ref5","unstructured":"Guidelines for surveillance of drug resistance in tuberculosis. Geneva, World Health Organization, 1994, (document WHO\/TB\/94.178). Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/who.int\/tb\/publications\/1994\/en\/index.html\" xlink:type=\"simple\">http:\/\/who.int\/tb\/publications\/1994\/en\/index.html<\/ext-link>. Accessed7 February 2014."},{"key":"ref6","first-page":"481","article-title":"Detection of rifampicin resistance in <italic>Mycobacterium tuberculosis<\/italic> isolates from diverse countries by a commercial line probe assay as an initial indicator of multidrug resistance","volume":"4(5)","author":"H Traore","year":"2000","journal-title":"Int J Tuberc Lung Dis"},{"key":"ref7","unstructured":"World Health Organization. Global tuberculosis control: 2011. Geneva: WHO; Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.who.int\/tb\/publications\/global_report\/2011\/gtbr11_\" xlink:type=\"simple\">http:\/\/www.who.int\/tb\/publications\/global_report\/2011\/gtbr11_<\/ext-link> full.pdf. Accessed7 February 2014."},{"key":"ref8","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1590\/S1020-49892012000300006","article-title":"Multidrug- resistant tuberculosis in Port-au-Prince,","volume":"31","author":"O Ocheretina","year":"2012","journal-title":"Haiti. Rev. Panam. Salud Publica"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1056\/NEJMoa0907847","article-title":"Rapid molecular detection of tuberculosis and rifampin resistance","volume":"363(11)","author":"CC Boehme","year":"2010","journal-title":"N Engl J Med"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"e1001067","DOI":"10.1371\/journal.pmed.1001067","article-title":"Screening for HIV-associated tuberculosis and rifampicin resistance before antiretroviral therapy using the Xpert MTB\/RIF assay: a prospective study","volume":"8(7)","author":"SD Lawn","year":"2011","journal-title":"PLoS Med"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"2232","DOI":"10.1128\/JCM.00268-13","article-title":"Use of Luminex MagPlex Magnetic Microspheres for High-Throughput Spoligotyping of <italic>Mycobacterium tuberculosis<\/italic> Isolates in Port-au-Prince, Haiti","volume":"51(7)","author":"O Ocheretina","year":"2013","journal-title":"J Clin Microbiol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1128\/JCM.35.4.907-914.1997","article-title":"Simultaneous detection and strain differentiation of <italic>Mycobacterium tuberculosis<\/italic> for diagnosis and epidemiology","volume":"35(4)","author":"J Kamerbeek","year":"1997","journal-title":"J Clin Microbiol"},{"key":"ref13","unstructured":"Kent PT, Kubica GP. (1985) Public health mycobacteriology: a guide for the level III laboratory. U.S. Department of Health and Human Services, Centers for Disease Control and Prevention, Atlanta, USA."},{"key":"ref14","unstructured":"National Committee on Clinical Laboratory Standards. Susceptibility testing of Mycobacteria, Nocardiae, and other aerobic Actinomycetes. Approved standard. NCCLS document M24-A. Wayne, Pennsylvania: NCCLS; 2003."},{"key":"ref15","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1128\/JCM.36.2.362-366.1998","article-title":"Rapid, low-technology MIC determination with clinical <italic>Mycobacterium tuberculosis<\/italic> isolates by using the microplate Alamar Blue assay","volume":"36(2)","author":"SG Franzblau","year":"1998","journal-title":"J Clin Microbiol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"3501","DOI":"10.1128\/JCM.01209-09","article-title":"<italic>Mycobacterium tuberculosis<\/italic> strains with highly discordant rifampin susceptibility test results","volume":"47(11)","author":"A Van Deun","year":"2009","journal-title":"J Clin Microbiol"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1495","DOI":"10.1016\/S0140-6736(11)60438-8","article-title":"Feasibility, diagnostic accuracy, and effectiveness of decentralized use of the Xpert MTB\/RIF test for diagnosis of tuberculosis and multidrug resistance: a 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analysis of sorangicin inhibition of bacterial RNA polymerase","volume":"24(4)","author":"EA Campbell","year":"2005","journal-title":"EMBO J"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"1233","DOI":"10.1128\/JCM.06479-11","article-title":"Performance of Tuberculosis Drug Susceptibility Testing in the United States Laboratories from 1994-2008","volume":"50(4)","author":"PK Angra","year":"2012","journal-title":"J Clin Microbiol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1128\/JCM.31.4.767-770.1993","article-title":"The resurgence of tuberculosis: is your laboratory ready?","volume":"31(4)","author":"FC Tenover","year":"1993","journal-title":"J Clin Microbiol"},{"key":"ref26","first-page":"216","article-title":"Clinical failures associated with <italic>rpoB<\/italic> mutations in phenotypically occult multidrug-resistant <italic>Mycobacterium tuberculosis<\/italic>","volume":"16(2)","author":"DA Williamson","year":"2011","journal-title":"Int 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