{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,9,13]],"date-time":"2023-09-13T11:48:18Z","timestamp":1694605698859},"reference-count":25,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2014,6,4]],"date-time":"2014-06-04T00:00:00Z","timestamp":1401840000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0098596","type":"journal-article","created":{"date-parts":[[2014,6,4]],"date-time":"2014-06-04T20:24:15Z","timestamp":1401913455000},"page":"e98596","update-policy":"http:\/\/dx.doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":3,"title":["A Novel Cassette Method for Probe Evaluation in the Designed Biochips"],"prefix":"10.1371","volume":"9","author":[{"given":"Vitaly","family":"Zinkevich","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nelly","family":"Sapojnikova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julian","family":"Mitchell","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tamar","family":"Kartvelishvili","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nino","family":"Asatiani","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Samia","family":"Alkhalil","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Irina","family":"Bogdarina","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Abdulmohsen A.","family":"Al-Humam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2014,6,4]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/S0076-6879(06)10001-4","article-title":"The Affymetrix GeneChip Platform: An overview","volume":"410","author":"DD Dalma-Weiszhausz","year":"2006","journal-title":"Methods Enzymol"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1007\/s13206-010-4203-z","article-title":"An oligonucleotide microarray to detect pathogens causing a sexually transmitted disease","volume":"4","author":"HK Yoon","year":"2010","journal-title":"BioChip J"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"5819","DOI":"10.1128\/JCM.42.12.5819-5824.2004","article-title":"Detection of <italic>gyrA<\/italic> and <italic>parC<\/italic> mutations associated with ciprofloxacin resistance in <italic>Neisseria gonorrhoeae<\/italic> by use of oligonucleotide biochip technology","volume":"42","author":"W Zhou","year":"2004","journal-title":"J Clinical Microbiol"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"611","DOI":"10.1128\/CMR.00019-09","article-title":"Basic concepts of microarrays and potential applications in clinical microbiology","volume":"22","author":"MB Miller","year":"2009","journal-title":"Clin Microbiol Rev"},{"key":"ref5","doi-asserted-by":"crossref","unstructured":"Arron ST, Skewes-Cox P, Do PH, Dybbro E, Da Costa M, et al. (2011) Validation of a Diagnostic Microarray for Human Papillomavirus: Coverage of 102 Genotypes. J Nucleic Acids Volume 2011, Article ID 756905, 6 pages. doi:10.4061\/2011\/756905.","DOI":"10.4061\/2011\/756905"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1016\/S0076-6879(06)10007-5","article-title":"Making and using spotted DNA microarrays in an academic core laboratory","volume":"410","author":"J Hager","year":"2006","journal-title":"Methods Enzymol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"3142","DOI":"10.1093\/nar\/24.16.3142","article-title":"Regioselective immobilization of short oligonucleotides to acrylic copolymer gels","volume":"24","author":"EN Timofeev","year":"1996","journal-title":"Nucleic Acids Res"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1006\/abio.1997.2209","article-title":"Manual manufacturing of oligonucleotide, DNA, and protein microchips","volume":"250","author":"D Guschin","year":"1997","journal-title":"Anal Biochem"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"2795","DOI":"10.1016\/S0006-3495(96)79473-0","article-title":"Theoretical analysis of the kinetics of DNA hybridization with gel-immobilized oligonucleotides","volume":"71","author":"MA Livshits","year":"1996","journal-title":"Biophysical J"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1007\/s13206-011-5107-2","article-title":"Analysis of DNA coverage using enzymatic cleavage of fluorescent labels","volume":"5","author":"MJ Kim","year":"2011","journal-title":"BioChip J"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"3753","DOI":"10.1128\/AEM.71.7.3753-3760.2005","article-title":"Empirical establishment of oligonucleotide probe design criteria","volume":"71","author":"Z He","year":"2005","journal-title":"Appl Environ Microbiol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1111\/j.1462-2920.2011.02559.x","article-title":"Detecting unkown sequences with DNA microarrays: explorative probe design strategies","volume":"14","author":"E Dugat-Bony","year":"2012","journal-title":"Environ Microbiol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1039\/C3AN01859H","article-title":"A simple cassette as point-of-care diagnostic device for naked-eye colorimetric bacteria detection","volume":"139","author":"M Safavieh","year":"2014","journal-title":"Analyst"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1021\/ac102858j","article-title":"Predicting viruses accurately by a multiplex microfluidic loop-mediated isothermal amplification chip","volume":"83","author":"X Fang","year":"2011","journal-title":"Anal Chem"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"645","DOI":"10.1586\/erm.09.46","article-title":"Helicase-dependent amplification: use in ONChip amplification and potential for point-of-care diagnostics","volume":"9","author":"D Andersen","year":"2009","journal-title":"Expert Rev Mol Diagn"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"3082","DOI":"10.1039\/c2lc40423k","article-title":"A paper and plastic device for performing recombinase polymerase amplification of HIV DNA","volume":"12","author":"BA Rohrman","year":"2010","journal-title":"Lab Chip"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"18","DOI":"10.3390\/bios3010018","article-title":"Isothermal amplification methods for the detection of nucleic acids in microfluidic devices","volume":"3","author":"LM Zanoli","year":"2013","journal-title":"Biosensors"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"2469","DOI":"10.1039\/c2lc40100b","article-title":"Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review","volume":"12","author":"P Craw","year":"2012","journal-title":"Lab on a Chip"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"e59","DOI":"10.1093\/nar\/gkr041","article-title":"Optimization of turn-back primers in isothermal amplification","volume":"39","author":"Y Kimura","year":"2011","journal-title":"Nucleic Acids Res Nucl Acids Res"},{"key":"ref20","unstructured":"PrimerExplorer website. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/primerexplorer.jp\/e\/v4_manual\/pdf\/PrimerExplorerV4_Manual_1.pdf\" xlink:type=\"simple\">http:\/\/primerexplorer.jp\/e\/v4_manual\/pdf\/PrimerExplorerV4_Manual_1.pdf<\/ext-link>. Accessed 2014 May 11."},{"key":"ref21","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1007\/s10156-009-0669-9","article-title":"Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases","volume":"15","author":"Y Mori","year":"2009","journal-title":"J Infect Chemother"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"2067","DOI":"10.1128\/JCM.02230-08","article-title":"Rapid real-time nucleic acid sequence-based amplification-molecular beacon platform to detect fungal and bacterial bloodstream infections","volume":"47","author":"YS Zhao","year":"2009","journal-title":"J Clin Microbiol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"107","DOI":"10.3390\/microarrays1030107","article-title":"Integrated amplification microarrays for Infectious disease diagnostics","volume":"1","author":"DP Chandler","year":"2012","journal-title":"Microarrays"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"e60059","DOI":"10.1371\/journal.pone.0060059","article-title":"Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis","volume":"8(3)","author":"S Huang","year":"2013","journal-title":"PLoS ONE"},{"key":"ref25","first-page":"49","article-title":"Genetic study of TORCH infections in women with bad obstetric history: multiplex polymerase chain reaction for detection of common pathogens and agents of congenital infections","volume":"3","author":"SAA Kamal","year":"2013","journal-title":"Journal of Biology, Agriculture and Healthcare"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0098596","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,23]],"date-time":"2018-10-23T03:33:11Z","timestamp":1540265591000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0098596"}},"subtitle":[],"editor":[{"given":"Cynthia","family":"Gibas","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2014,6,4]]},"references-count":25,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2014,6,4]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0098596","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,6,4]]}}}