{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T22:52:01Z","timestamp":1769813521214,"version":"3.49.0"},"reference-count":29,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2014,6,17]],"date-time":"2014-06-17T00:00:00Z","timestamp":1402963200000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0099979","type":"journal-article","created":{"date-parts":[[2014,6,17]],"date-time":"2014-06-17T16:27:46Z","timestamp":1403022466000},"page":"e99979","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":38,"title":["Standardized Metadata for Human Pathogen\/Vector Genomic Sequences"],"prefix":"10.1371","volume":"9","author":[{"given":"Vivien G.","family":"Dugan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Scott J.","family":"Emrich","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gloria I.","family":"Giraldo-Calder\u00f3n","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Omar S.","family":"Harb","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ruchi M.","family":"Newman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brett E.","family":"Pickett","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lynn M.","family":"Schriml","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy B.","family":"Stockwell","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christian J.","family":"Stoeckert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dan E.","family":"Sullivan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Indresh","family":"Singh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Doyle V.","family":"Ward","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alison","family":"Yao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jie","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tanya","family":"Barrett","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bruce","family":"Birren","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lauren","family":"Brinkac","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vincent M.","family":"Bruno","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elizabet","family":"Caler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sin\u00e9ad","family":"Chapman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Frank H.","family":"Collins","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christina A.","family":"Cuomo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Valentina","family":"Di Francesco","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Scott","family":"Durkin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark","family":"Eppinger","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Feldgarden","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Claire","family":"Fraser","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"W. Florian","family":"Fricke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria","family":"Giovanni","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthew R.","family":"Henn","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Erin","family":"Hine","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julie Dunning","family":"Hotopp","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ilene","family":"Karsch-Mizrachi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jessica C.","family":"Kissinger","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eun Mi","family":"Lee","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Punam","family":"Mathur","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emmanuel F.","family":"Mongodin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cheryl I.","family":"Murphy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Garry","family":"Myers","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel E.","family":"Neafsey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karen E.","family":"Nelson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"William C.","family":"Nierman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julia","family":"Puzak","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Rasko","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David S.","family":"Roos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lisa","family":"Sadzewicz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Joana C.","family":"Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bruno","family":"Sobral","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R. Burke","family":"Squires","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rick L.","family":"Stevens","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luke","family":"Tallon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Herve","family":"Tettelin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Wentworth","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Owen","family":"White","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rebecca","family":"Will","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jennifer","family":"Wortman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yun","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard H.","family":"Scheuermann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2014,6,17]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"D346","DOI":"10.1093\/nar\/gkp848","article-title":"The genomes on line database (gold) in 2009: Status of genomic and metagenomic projects and their associated metadata","volume":"38","author":"K Liolios","year":"2010","journal-title":"Nucleic Acids Research"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"D571","DOI":"10.1093\/nar\/gkr1100","article-title":"The genomes online database (gold) v.4: Status of genomic and metagenomic projects and their associated metadata","volume":"40","author":"I Pagani","year":"2012","journal-title":"Nucleic Acids Research"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1073\/pnas.1211205110","article-title":"Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia","volume":"110","author":"S Takala-Harrison","year":"2013","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1186\/1752-0509-5-157","article-title":"Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance","volume":"5","author":"JP Svensson","year":"2011","journal-title":"BMC Systems Biology"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"2541","DOI":"10.1101\/gr.137430.112","article-title":"A fine scale phenotype-genotype virulence map of a bacterial pathogen","volume":"22","author":"T van Opijnen","year":"2012","journal-title":"Genome Research"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"e1478","DOI":"10.1371\/journal.pntd.0001478","article-title":"A \u201cgenome-to-lead\u201d approach for insecticide discovery: Pharmacological characterization and screening of aedes aegypti d(1)-like dopamine receptors","volume":"6","author":"JM Meyer","year":"2012","journal-title":"PLoS Neglected Tropical Diseases"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1146\/annurev-ento-120710-100651","article-title":"Mosquito genomics: Progress and challenges","volume":"57","author":"DW Severson","year":"2012","journal-title":"Annual Review of Entomology"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"224","DOI":"10.1111\/j.1469-0691.2012.03774.x","article-title":"Plague in the genomic area","volume":"18","author":"M Drancourt","year":"2012","journal-title":"Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1128\/MMBR.00009-08","article-title":"A bioinformatician\u2019s guide to metagenomics","volume":"72","author":"V Kunin","year":"2008","journal-title":"Microbiology and Molecular Biology Reviews"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"D684","DOI":"10.1093\/nar\/gks1113","article-title":"Eupathdb: The eukaryotic pathogen database","volume":"41","author":"C Aurrecoechea","year":"2013","journal-title":"Nucleic Acids Research"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"D581","DOI":"10.1093\/nar\/gkt1099","article-title":"PATRIC, the bacterial bioinformatics database and analysis resource","volume":"42","author":"AR Wattam","year":"2013","journal-title":"Nucleic Acids Research"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"D729","DOI":"10.1093\/nar\/gkr1089","article-title":"Vectorbase: Improvements to a bioinformatics resource for invertebrate vector genomics","volume":"40","author":"K Megy","year":"2012","journal-title":"Nucleic Acids Research"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"D593","DOI":"10.1093\/nar\/gkr859","article-title":"ViPR: An open bioinformatics database and analysis resource for virology research","volume":"40","author":"BE Pickett","year":"2012","journal-title":"Nucleic Acids Research"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1111\/j.1750-2659.2011.00331.x","article-title":"Influenza research database: An integrated bioinformatics resource for influenza research and surveillance","volume":"6","author":"RB Squires","year":"2012","journal-title":"Influenza and Other Respiratory Viruses"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"3212","DOI":"10.1128\/IAI.00105-07","article-title":"National institute of allergy and infectious diseases bioinformatics resource centers: New assets for pathogen informatics","volume":"75","author":"JM Greene","year":"2007","journal-title":"Infection and Immunity"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1038\/nbt.1411","article-title":"Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project","volume":"26","author":"CF Taylor","year":"2008","journal-title":"Nature Biotechnology"},{"key":"ref17","doi-asserted-by":"crossref","unstructured":"Brinkman RR, Courtot M, Derom D, Fostel JM, He Y, et al. (2010) Modeling biomedical experimental processes with OBI. Journal of Biomedical Semantics Suppl 1: S7.","DOI":"10.1186\/2041-1480-1-S1-S7"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"1251","DOI":"10.1038\/nbt1346","article-title":"The OBO foundry: Coordinated evolution of ontologies to support biomedical data integration","volume":"25","author":"B Smith","year":"2007","journal-title":"Nature Biotechnology"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/nbt1360","article-title":"The minimum information about a genome sequence (MIGS) specification","volume":"26","author":"D Field","year":"2008","journal-title":"Nature Biotechnology"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"D57","DOI":"10.1093\/nar\/gkr1163","article-title":"Bioproject and biosample databases at NCBI: Facilitating capture and organization of metadata","volume":"40","author":"T Barrett","year":"2012","journal-title":"Nucleic Acids Research"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"D36","DOI":"10.1093\/nar\/gks1195","article-title":"Genbank","volume":"41","author":"DA Benson","year":"2013","journal-title":"Nucleic Acids Research"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"e1001088","DOI":"10.1371\/journal.pbio.1001088","article-title":"The Genomic Standards Consortium","volume":"9","author":"D Field","year":"2011","journal-title":"PLoS Biology"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1038\/nbt.1823","article-title":"Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications","volume":"29","author":"P Yilmaz","year":"2011","journal-title":"Nature Biotechnology"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1207\/s15427633scc0401_5","article-title":"Snap and span: Towards dynamic spatial ontology","volume":"4","author":"P Grenon","year":"2004","journal-title":"Spatial Cognition and Computation"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"2354","DOI":"10.1093\/bioinformatics\/btq415","article-title":"ISA software suite: Supporting standards-compliant experimental annotation and enabling curation at the community level","volume":"26","author":"P Rocca-Serra","year":"2010","journal-title":"Bioinformatics"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"525","DOI":"10.1093\/bioinformatics\/bts718","article-title":"OntoMaton: a bioportal powered ontology widget for Google Spreadsheets","volume":"29","author":"E Maguire","year":"2013","journal-title":"Bioinformatics"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1186\/1471-2105-7-97","article-title":"The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries","volume":"7","author":"RG Cote","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"W170","DOI":"10.1093\/nar\/gkp440","article-title":"Bioportal: Ontologies and integrated data resources at the click of a mouse","volume":"37","author":"NF Noy","year":"2009","journal-title":"Nucleic Acids Research"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"W541","DOI":"10.1093\/nar\/gkr469","article-title":"Bioportal: Enhanced functionality via new web services from the national center for biomedical ontology to access and use ontologies in software applications","volume":"39","author":"PL Whetzel","year":"2011","journal-title":"Nucleic Acids Research"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0099979","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,20]],"date-time":"2018-10-20T04:11:06Z","timestamp":1540008666000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0099979"}},"subtitle":[],"editor":[{"given":"Timothy D.","family":"Read","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2014,6,17]]},"references-count":29,"journal-issue":{"issue":"6","published-online":{"date-parts":[[2014,6,17]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0099979","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,6,17]]}}}