{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,15]],"date-time":"2026-07-15T14:34:24Z","timestamp":1784126064716,"version":"3.55.0"},"reference-count":30,"publisher":"Public Library of Science (PLoS)","issue":"12","license":[{"start":{"date-parts":[[2014,12,8]],"date-time":"2014-12-08T00:00:00Z","timestamp":1417996800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0114428","type":"journal-article","created":{"date-parts":[[2014,12,8]],"date-time":"2014-12-08T19:06:37Z","timestamp":1418065597000},"page":"e114428","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":38,"title":["Molecular Epidemiology of Nontuberculous Mycobacteria Isolates from Clinical and Environmental Sources of a Metropolitan City"],"prefix":"10.1371","volume":"9","author":[{"given":"Ali","family":"Akbar Velayati","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Parissa","family":"Farnia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mohadese","family":"Mozafari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Donya","family":"Malekshahian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shima","family":"Seif","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Snaz","family":"Rahideh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mehdi","family":"Mirsaeidi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2014,12,8]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"e124","DOI":"10.1086\/648443","article-title":"Nontuberculous mycobacterial disease prevalence and risk factors: a changing epidemiology","volume":"49","author":"PM Cassidy","year":"2009","journal-title":"Clin Infect Dis"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1111\/j.1365-2672.2009.04161.x","article-title":"Surrounded by mycobacteria: nontuberculous mycobacteria in the human environment","volume":"107","author":"JO Falkinham","year":"2009","journal-title":"J Appl Microbiol"},{"key":"ref3","first-page":"798","article-title":"Cervical lymphadenitis in children caused by chromogenic Mycobacteria","volume":"75","author":"AM Masson","year":"1956","journal-title":"Can Med Assoc J"},{"key":"ref4","first-page":"665","article-title":"Pulmonary non-tuberculous mycobacterial infections","volume":"14","author":"CL Daley","year":"2010","journal-title":"Int J Tuberc Lung Dis"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"e91879","DOI":"10.1371\/journal.pone.0091879","article-title":"Nontuberculous mycobacterial disease mortality in the United States, 1999-2010: a population-based comparative study","volume":"9","author":"M Mirsaeidi","year":"2014","journal-title":"PLoS One"},{"key":"ref6","first-page":"1186","article-title":"Non-tuberculous mycobacteria: patterns of isolation. A multi-country retrospective survey","volume":"8","author":"N Martin-Casabona","year":"2004","journal-title":"Int J Tuberc Lung Dis"},{"key":"ref7","doi-asserted-by":"crossref","unstructured":"Mirsaeidi M, Farshidpour M, Ebrahimi G, Aliberti S, Falkinham JO 3rd (2014) Management of nontuberculous mycobacterial infection in the elderly. Eur J Intern Med.","DOI":"10.1016\/j.ejim.2014.03.008"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1016\/S0140-6736(13)60632-7","article-title":"Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study","volume":"381","author":"JM Bryant","year":"2013","journal-title":"Lancet"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1111\/j.1469-0691.2012.04005.x","article-title":"HSP65-PRA identification of non-tuberculosis mycobacteria from 4892 samples suspicious for mycobacterial infections","volume":"19","author":"M Saifi","year":"2013","journal-title":"Clin Microbiol Infect"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1097\/MAJ.0b013e318185d32f","article-title":"Nontuberculous mycobacteria among patients who are suspected for multidrug-resistant tuberculosis-need for earlier identification of nontuberculosis mycobacteria","volume":"337","author":"P Tabarsi","year":"2009","journal-title":"Am J Med Sci"},{"key":"ref11","first-page":"3618","article-title":"Isolation of rapid growing mycobacteria from soil and water in Iran","volume":"9","author":"AL Mohammad Rahbar","year":"2010","journal-title":"African Journal of Biotechnology"},{"key":"ref12","first-page":"849","article-title":"Selective isolation of mycobacteria from soil: a statistical analysis approach","volume":"134","author":"F Portaels","year":"1988","journal-title":"J Gen Microbiol"},{"key":"ref13","doi-asserted-by":"crossref","unstructured":"Velayati AA, Farnia P, Mozafari M, Malekshahian D, Farahbod AM, et al. (2014) Identification and Genotyping of Mycobacterium Tuberculosis Isolated From Water and Soil Samples of a Metropolitan City. Chest.","DOI":"10.1378\/chest.14-0960"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"547","DOI":"10.1128\/AEM.63.2.547-552.1997","article-title":"Comparison of methods for isolation of mycobacteria from water","volume":"63","author":"M Neumann","year":"1997","journal-title":"Appl Environ Microbiol"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/S0163-4453(95)91333-5","article-title":"Isolation of atypical mycobacteria from tap water in hospitals and homes: is this a possible source of disseminated MAC infection in AIDS patients","volume":"31","author":"M Peters","year":"1995","journal-title":"J Infect"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1215","DOI":"10.1093\/nar\/16.3.1215","article-title":"A simple salting out procedure for extracting DNA from human nucleated cells","volume":"16","author":"SA Miller","year":"1988","journal-title":"Nucleic Acids Res"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/j.mimet.2005.02.010","article-title":"PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp Heat Shock Protein 65 (hsp65) gene for differentiation of Mycobacterium spp","volume":"62","author":"H Kim","year":"2005","journal-title":"J Microbiol Methods"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1128\/JCM.31.2.175-178.1993","article-title":"Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis","volume":"31","author":"A Telenti","year":"1993","journal-title":"J Clin Microbiol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"1094","DOI":"10.1128\/JCM.38.3.1094-1104.2000","article-title":"Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases","volume":"38","author":"A Roth","year":"2000","journal-title":"J Clin Microbiol"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"144","DOI":"10.1016\/j.ijmyco.2014.04.001","article-title":"(2014) Identification of nontuberculosis mycobacteria by partial gene sequencing and public databases","volume":"3","author":"ICP Joao","journal-title":"nt J Mycobacteriol"},{"key":"ref21","first-page":"1","article-title":"An epidemiological perspective on bovine tuberculosis spotlighting facts and dilemmas in Iran, a historically zebu-dominant farming country","volume":"5","author":"K Tadayon","year":"2013","journal-title":"Iran J Microbiol"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"247906","DOI":"10.1155\/2014\/247906","article-title":"Current Perspectives on Mycobacterium farcinogenes and Mycobacterium senegalense, the Causal Agents of Bovine Farcy","volume":"2014","author":"ME Hamid","year":"2014","journal-title":"Vet Med Int"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"684","DOI":"10.1016\/j.arth.2005.03.001","article-title":"Mycobacterium farcinogenes infection after total hip arthroplasty","volume":"20","author":"TC Wong","year":"2005","journal-title":"J Arthroplasty"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"e1000","DOI":"10.1016\/j.ijid.2013.03.018","article-title":"Non-tuberculous mycobacterial disease is common in patients with non-cystic fibrosis bronchiectasis","volume":"17","author":"M Mirsaeidi","year":"2013","journal-title":"Int J Infect Dis"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"1598","DOI":"10.1016\/j.rmed.2008.05.004","article-title":"Clinical and radiological features of Mycobacterium kansasii infection and Mycobacterium simiae infection","volume":"102","author":"D Shitrit","year":"2008","journal-title":"Respir Med"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"838","DOI":"10.1080\/00365540500264712","article-title":"Emergence of Mycobacterium simiae in respiratory specimens","volume":"37","author":"Z Samra","year":"2005","journal-title":"Scand J Infect Dis"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"475","DOI":"10.7883\/yoken.66.475","article-title":"Mycobacterium simiae: a possible emerging pathogen in Iran","volume":"66","author":"A Hashemi-Shahraki","year":"2013","journal-title":"Jpn J Infect Dis"},{"key":"ref28","first-page":"106","article-title":"Pulmonary mycobacterium Simiae infection and HTLV1 infection: an incidental co-infection or a predisposing factor","volume":"65","author":"SM Mirsaeidi","year":"2006","journal-title":"Monaldi Arch Chest Dis"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"23","DOI":"10.3855\/jidc.1297","article-title":"Pulmonary disease caused by Mycobacterium simiae in Iran's national referral center for tuberculosis","volume":"6","author":"P Baghaei","year":"2012","journal-title":"J Infect Dev Ctries"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1016\/j.meegid.2013.08.027","article-title":"Species spectrum of nontuberculous mycobacteria isolated from suspected tuberculosis patients, identification by multi locus sequence analysis","volume":"20","author":"A Hashemi-Shahraki","year":"2013","journal-title":"Infect Genet Evol"}],"container-title":["PLoS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0114428","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,27]],"date-time":"2020-08-27T17:46:41Z","timestamp":1598550401000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0114428"}},"subtitle":[],"editor":[{"given":"Andres R.","family":"Floto","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2014,12,8]]},"references-count":30,"journal-issue":{"issue":"12","published-online":{"date-parts":[[2014,12,8]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0114428","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,12,8]]}}}