{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,8]],"date-time":"2026-06-08T12:10:33Z","timestamp":1780920633403,"version":"3.54.1"},"reference-count":79,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2015,9,1]],"date-time":"2015-09-01T00:00:00Z","timestamp":1441065600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0137295","type":"journal-article","created":{"date-parts":[[2015,9,1]],"date-time":"2015-09-01T17:56:11Z","timestamp":1441130171000},"page":"e0137295","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":18,"title":["Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition"],"prefix":"10.1371","volume":"10","author":[{"given":"Arindam","family":"Deb","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sudip","family":"Kundu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2015,9,1]]},"reference":[{"issue":"4916","key":"ref1","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1126\/science.2667136","article-title":"Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins","volume":"245","author":"PJ Mitchell","year":"1989","journal-title":"Science"},{"issue":"6945","key":"ref2","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1038\/nature01763","article-title":"Transcription regulation and animal diversity","volume":"424","author":"M Levine","year":"2003","journal-title":"Nature"},{"issue":"5568","key":"ref3","doi-asserted-by":"crossref","first-page":"752","DOI":"10.1126\/science.1069516","article-title":"Genetic dissection of transcriptional regulation in budding yeast","volume":"296","author":"RB Brem","year":"2002","journal-title":"Science"},{"issue":"4983","key":"ref4","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1126\/science.250.4983.959","article-title":"The cauliflower mosaic virus 35S promoter: combinatorial regulation of transcription in plants","volume":"250","author":"PN Benfey","year":"1990","journal-title":"Science"},{"issue":"4","key":"ref5","doi-asserted-by":"crossref","first-page":"1111","DOI":"10.1104\/pp.118.4.1111","article-title":"Transcriptional regulation in plants: the importance of combinatorial control","volume":"118","author":"KB Singh","year":"1998","journal-title":"Plant Physiology"},{"issue":"9","key":"ref6","doi-asserted-by":"crossref","first-page":"812","DOI":"10.1038\/nsmb820","article-title":"Combinatorial control of gene expression","volume":"11","author":"A Rem\u00e9nyi","year":"2004","journal-title":"Nature structural & molecular biology"},{"issue":"2","key":"ref7","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1038\/ng724","article-title":"Identifying regulatory networks by combinatorial analysis of promoter elements","volume":"29","author":"Y Pilpel","year":"2001","journal-title":"Nature genetics"},{"issue":"11","key":"ref8","doi-asserted-by":"crossref","first-page":"1723","DOI":"10.1101\/gr.301202","article-title":"Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae","volume":"12","author":"P Sudarsanam","year":"2002","journal-title":"Genome research"},{"issue":"8","key":"ref9","doi-asserted-by":"crossref","first-page":"R56","DOI":"10.1186\/gb-2004-5-8-r56","article-title":"Identifying combinatorial regulation of transcription factors and binding motifs","volume":"5","author":"M Kato","year":"2004","journal-title":"Genome biology"},{"issue":"3","key":"ref10","doi-asserted-by":"crossref","first-page":"917","DOI":"10.1093\/nar\/gkj487","article-title":"Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae","volume":"34","author":"X Yu","year":"2006","journal-title":"Nucleic acids research"},{"issue":"1","key":"ref11","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1186\/1471-2164-9-112","article-title":"Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions","volume":"9","author":"K Murakami","year":"2008","journal-title":"BMC genomics"},{"issue":"2","key":"ref12","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1073\/pnas.231608898","article-title":"Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome","volume":"99","author":"BP Berman","year":"2002","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"19","key":"ref13","doi-asserted-by":"crossref","first-page":"4278","DOI":"10.1093\/nar\/gkf535","article-title":"Predicting transcription factor synergism","volume":"30","author":"S Hannenhalli","year":"2002","journal-title":"Nucleic acids research"},{"issue":"1","key":"ref14","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1186\/1471-2105-7-218","article-title":"XcisClique: analysis of regulatory bicliques","volume":"7","author":"A Pati","year":"2006","journal-title":"BMC bioinformatics"},{"issue":"1","key":"ref15","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1186\/1471-2164-9-561","article-title":"PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups","volume":"9","author":"WC Chang","year":"2008","journal-title":"Bmc Genomics"},{"issue":"Suppl 7","key":"ref16","doi-asserted-by":"crossref","first-page":"S11","DOI":"10.1186\/1471-2164-13-S7-S11","article-title":"A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription","volume":"13","author":"A Vandenbon","year":"2012","journal-title":"BMC genomics"},{"issue":"1","key":"ref17","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1016\/j.jmb.2006.04.029","article-title":"Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast","volume":"360","author":"S Balaji","year":"2006","journal-title":"Journal of molecular biology"},{"issue":"11","key":"ref18","doi-asserted-by":"crossref","first-page":"1345","DOI":"10.1093\/bioinformatics\/btp172","article-title":"In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control","volume":"25","author":"A Lindl\u00f6f","year":"2009","journal-title":"Bioinformatics"},{"issue":"2","key":"ref19","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1016\/j.gene.2012.09.048","article-title":"Patterns of cis-element enrichment reveal potential regulatory modules involved in the transcriptional regulation of anoxia response of japonica rice","volume":"511","author":"B Mohanty","year":"2012","journal-title":"Gene"},{"issue":"1","key":"ref20","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1146\/annurev.micro.57.030502.090957","article-title":"On the trail of a cereal killer: exploring the biology of Magnaporthe grisea","volume":"57","author":"NJ Talbot","year":"2003","journal-title":"Annual Reviews in Microbiology"},{"issue":"3","key":"ref21","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1007\/s11103-008-9423-4","article-title":"Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes","volume":"69","author":"SK Lenka","year":"2009","journal-title":"Plant molecular biology"},{"issue":"suppl 1","key":"ref22","doi-asserted-by":"crossref","first-page":"D883","DOI":"10.1093\/nar\/gkl976","article-title":"The TIGR rice genome annotation resource: improvements and new features","volume":"35","author":"S Ouyang","year":"2007","journal-title":"Nucleic acids research"},{"key":"ref23","unstructured":"Smit AF, Hubley R, Green P. RepeatMasker Open-3.0; 1996."},{"issue":"1","key":"ref24","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1093\/nar\/27.1.297","article-title":"Plant cis-acting regulatory DNA elements (PLACE) database: 1999","volume":"27","author":"K Higo","year":"1999","journal-title":"Nucleic acids research"},{"issue":"2","key":"ref25","first-page":"203","article-title":"SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements","volume":"7","author":"DS Prestridge","year":"1991","journal-title":"Computer applications in the biosciences: CABIOS"},{"issue":"1","key":"ref26","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1093\/nar\/30.1.207","article-title":"Gene Expression Omnibus: NCBI gene expression and hybridization array data repository","volume":"30","author":"R Edgar","year":"2002","journal-title":"Nucleic acids research"},{"issue":"1","key":"ref27","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1016\/j.jplph.2007.06.013","article-title":"Susceptibility of rice to the blast fungus, Magnaporthe grisea","volume":"165","author":"C Ribot","year":"2008","journal-title":"Journal of plant physiology"},{"issue":"9","key":"ref28","doi-asserted-by":"crossref","first-page":"3177","DOI":"10.1105\/tpc.110.078048","article-title":"Tissue-adapted invasion strategies of the rice blast fungus Magnaporthe oryzae","volume":"22","author":"S Marcel","year":"2010","journal-title":"The Plant Cell"},{"issue":"10","key":"ref29","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: open software development for computational biology and bioinformatics","volume":"5","author":"RC Gentleman","year":"2004","journal-title":"Genome biology"},{"issue":"1","key":"ref30","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1093\/nar\/gkg121","article-title":"NetAffx: Affymetrix probesets and annotations","volume":"31","author":"G Liu","year":"2003","journal-title":"Nucleic acids research"},{"issue":"1","key":"ref31","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1104\/pp.110.159459","article-title":"The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks","volume":"154","author":"SP Ficklin","year":"2010","journal-title":"Plant physiology"},{"issue":"1","key":"ref32","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1186\/1471-2105-11-221","article-title":"GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs","volume":"11","author":"A Risue\u00f1o","year":"2010","journal-title":"BMC bioinformatics"},{"issue":"Suppl 10","key":"ref33","doi-asserted-by":"crossref","first-page":"S14","DOI":"10.1186\/1471-2105-12-S10-S14","article-title":"Predicting gene ontology from a global meta-analysis of 1-color microarray experiments","volume":"12","author":"M Dozmorov","year":"2011","journal-title":"BMC bioinformatics"},{"issue":"1","key":"ref34","first-page":"1","article-title":"The rice oligonucleotide array database: an atlas of rice gene expression","volume":"5","author":"P Cao","year":"2012","journal-title":"Rice"},{"issue":"D1","key":"ref35","doi-asserted-by":"crossref","first-page":"D1182","DOI":"10.1093\/nar\/gkt1016","article-title":"PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors","volume":"42","author":"J Jin","year":"2014","journal-title":"Nucleic acids research"},{"issue":"8","key":"ref36","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1093\/bioinformatics\/btl039","article-title":"CFinder: locating cliques and overlapping modules in biological networks","volume":"22","author":"B Adamcsek","year":"2006","journal-title":"Bioinformatics"},{"issue":"3","key":"ref37","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/bioinformatics\/btq675","article-title":"Cytoscape 2.8: new features for data integration and network visualization","volume":"27","author":"ME Smoot","year":"2011","journal-title":"Bioinformatics"},{"issue":"20","key":"ref38","doi-asserted-by":"crossref","first-page":"208701","DOI":"10.1103\/PhysRevLett.89.208701","article-title":"Assortative mixing in networks","volume":"89","author":"ME Newman","year":"2002","journal-title":"Physical review letters"},{"issue":"3","key":"ref39","doi-asserted-by":"crossref","first-page":"e59720","DOI":"10.1371\/journal.pone.0059720","article-title":"Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance","volume":"8","author":"T Wei","year":"2013","journal-title":"PloS one"},{"issue":"8","key":"ref40","doi-asserted-by":"crossref","first-page":"1285","DOI":"10.1016\/j.bbamcr.2006.11.011","article-title":"Regulation of gene transcription by mitogen-activated protein kinase signaling pathways","volume":"1773","author":"AJ Whitmarsh","year":"2007","journal-title":"Biochimica et Biophysica Acta (BBA)-Molecular Cell Research"},{"issue":"4","key":"ref41","doi-asserted-by":"crossref","first-page":"1648","DOI":"10.1104\/pp.109.138990","article-title":"The role of WRKY transcription factors in plant immunity","volume":"150","author":"SP Pandey","year":"2009","journal-title":"Plant physiology"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1016\/S0065-2296(09)51010-5","article-title":"Transcriptional regulation of plant defense responses","volume":"51","author":"MC Van Verk","year":"2009","journal-title":"Advances in Botanical Research"},{"key":"ref43","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2013.00098","article-title":"Regulate and be regulated: integration of defense and other signals by the AtMYB30 transcription factor","volume":"4","author":"S Raffaele","year":"2013","journal-title":"Frontiers in plant science"},{"issue":"4","key":"ref44","doi-asserted-by":"crossref","first-page":"1457","DOI":"10.1104\/pp.104.900254","article-title":"Ethylene response factors in jasmonate signaling and defense response","volume":"146","author":"AK Grennan","year":"2008","journal-title":"Plant physiology"},{"issue":"3","key":"ref45","doi-asserted-by":"crossref","first-page":"1347","DOI":"10.1104\/pp.108.117523","article-title":"The AP2\/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense","volume":"147","author":"M Pr\u00e9","year":"2008","journal-title":"Plant Physiology"},{"issue":"1","key":"ref46","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1016\/j.plantsci.2006.07.019","article-title":"Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea","volume":"172","author":"R Lin","year":"2007","journal-title":"Plant science"},{"issue":"1-2","key":"ref47","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1007\/s11103-012-9981-3","article-title":"Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea","volume":"81","author":"L Sun","year":"2013","journal-title":"Plant molecular biology"},{"issue":"suppl 1","key":"ref48","doi-asserted-by":"crossref","first-page":"D258","DOI":"10.1093\/nar\/gkh036","article-title":"The Gene Ontology (GO) database and informatics resource","volume":"32","author":"GO Consortium","year":"2004","journal-title":"Nucleic acids research"},{"issue":"3-4","key":"ref49","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1007\/s001220051248","article-title":"Enhanced resistance to blast (Magnaporthe grisea) in transgenic Japonica rice by constitutive expression of rice chitinase","volume":"99","author":"Y Nishizawa","year":"1999","journal-title":"Theoretical and applied genetics"},{"issue":"1","key":"ref50","doi-asserted-by":"crossref","first-page":"322","DOI":"10.1105\/tpc.111.092957","article-title":"Effector-mediated suppression of chitin-triggered immunity by Magnaporthe oryzae is necessary for rice blast disease","volume":"24","author":"TA Mentlak","year":"2012","journal-title":"The Plant Cell"},{"issue":"310","key":"ref51","doi-asserted-by":"crossref","first-page":"cm13","DOI":"10.1126\/stke.3102005cm13","article-title":"G protein regulation of disease resistance during infection of rice with rice blast fungus","volume":"2005","author":"SM Assmann","year":"2005","journal-title":"Science Signaling"},{"issue":"10","key":"ref52","doi-asserted-by":"crossref","first-page":"3203","DOI":"10.1093\/nar\/gkm201","article-title":"Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation","volume":"35","author":"S Vardhanabhuti","year":"2007","journal-title":"Nucleic acids research"},{"issue":"14","key":"ref53","doi-asserted-by":"crossref","first-page":"3732","DOI":"10.1002\/j.1460-2075.1996.tb00743.x","article-title":"Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis","volume":"15","author":"P Puente","year":"1996","journal-title":"The EMBO journal"},{"issue":"6","key":"ref54","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1016\/S1360-1385(99)01418-1","article-title":"Regulatory mechanism of plant gene transcription by GT-elements and GT-factors","volume":"4","author":"DX Zhou","year":"1999","journal-title":"Trends in plant science"},{"issue":"23","key":"ref55","doi-asserted-by":"crossref","first-page":"7024","DOI":"10.1093\/nar\/gkg894","article-title":"Identifying cooperativity among transcription factors controlling the cell cycle in yeast","volume":"31","author":"N Banerjee","year":"2003","journal-title":"Nucleic acids research"},{"issue":"5","key":"ref56","doi-asserted-by":"crossref","first-page":"768","DOI":"10.1111\/j.1365-313X.2006.02733.x","article-title":"TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana","volume":"46","author":"A Baudry","year":"2006","journal-title":"The Plant Journal"},{"issue":"4983","key":"ref57","doi-asserted-by":"crossref","first-page":"1004","DOI":"10.1126\/science.250.4983.1004","article-title":"Increase in salicylic acid at the onset of systemic acquired resistance in cucumber","volume":"250","author":"J M\u00e9traux","year":"1990","journal-title":"Science"},{"issue":"13","key":"ref58","doi-asserted-by":"crossref","first-page":"1577","DOI":"10.1101\/gad.297704","article-title":"Conserved MYC transcription factors play a key role in jasmonate signaling both in tomato and Arabidopsis","volume":"18","author":"M Boter","year":"2004","journal-title":"Genes & Development"},{"issue":"7","key":"ref59","doi-asserted-by":"crossref","first-page":"1938","DOI":"10.1105\/tpc.022319","article-title":"JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis","volume":"16","author":"O Lorenzo","year":"2004","journal-title":"The Plant Cell Online"},{"issue":"4","key":"ref60","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1016\/S1369-5266(02)00275-3","article-title":"Cross talk between signaling pathways in pathogen defense","volume":"5","author":"BN Kunkel","year":"2002","journal-title":"Current opinion in plant biology"},{"issue":"3","key":"ref61","doi-asserted-by":"crossref","first-page":"1358","DOI":"10.1104\/pp.108.121392","article-title":"Kinetics of salicylate-mediated suppression of jasmonate signaling reveal a role for redox modulation","volume":"147","author":"A Koornneef","year":"2008","journal-title":"Plant Physiology"},{"issue":"8","key":"ref62","doi-asserted-by":"crossref","first-page":"969","DOI":"10.1016\/j.jplph.2006.07.006","article-title":"OsWRKY71, a rice transcription factor, is involved in rice defense response","volume":"164","author":"X Liu","year":"2007","journal-title":"Journal of plant physiology"},{"issue":"2","key":"ref63","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1111\/j.1365-313X.2006.02694.x","article-title":"Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells","volume":"46","author":"Z Xie","year":"2006","journal-title":"The Plant Journal"},{"issue":"1","key":"ref64","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1105\/tpc.006130","article-title":"Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling","volume":"15","author":"H Abe","year":"2003","journal-title":"The Plant Cell Online"},{"issue":"3","key":"ref65","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1023\/A:1006144505121","article-title":"Mutation of GT-1 binding sites in the Pr-1A promoter influences the level of inducible gene expression in vivo","volume":"40","author":"AS Buchel","year":"1999","journal-title":"Plant molecular biology"},{"issue":"4","key":"ref66","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1093\/pcp\/pch055","article-title":"Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants","volume":"45","author":"S Yanagisawa","year":"2004","journal-title":"Plant and Cell Physiology"},{"issue":"7","key":"ref67","doi-asserted-by":"crossref","first-page":"1527","DOI":"10.1105\/tpc.13.7.1527","article-title":"Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression","volume":"13","author":"D Yu","year":"2001","journal-title":"The Plant Cell Online"},{"issue":"403","key":"ref68","doi-asserted-by":"crossref","first-page":"1721","DOI":"10.1093\/jxb\/erh211","article-title":"Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1","volume":"55","author":"EJ Ross","year":"2004","journal-title":"Journal of experimental botany"},{"issue":"7","key":"ref69","doi-asserted-by":"crossref","first-page":"388","DOI":"10.1016\/j.tplants.2011.03.003","article-title":"Cytokinins and plant immunity: old foes or new friends?","volume":"16","author":"J Choi","year":"2011","journal-title":"Trends in plant science"},{"issue":"5","key":"ref70","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1023\/A:1006095023050","article-title":"Functional architecture of a late pollen promoter: pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements","volume":"37","author":"N Bate","year":"1998","journal-title":"Plant molecular biology"},{"issue":"2","key":"ref71","doi-asserted-by":"crossref","first-page":"1020","DOI":"10.1104\/pp.102.017814","article-title":"A role for the GCC-box in jasmonate-mediated activation of the PDF1. 2 gene of Arabidopsis","volume":"132","author":"RL Brown","year":"2003","journal-title":"Plant Physiology"},{"issue":"5","key":"ref72","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1055\/s-2005-865851","article-title":"Up-Regulation of OsBIHD1, a Rice Gene Encoding BELL Homeodomain Transcriptional Factor, in Disease Resistance Responses","volume":"7","author":"H Luo","year":"2005","journal-title":"Plant Biology"},{"issue":"2","key":"ref73","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1007\/BF00279795","article-title":"Synergistic effect of upstream sequences, CCAAT box elements, and HSE sequences for enhanced expression of chimaeric heat shock genes in transgenic tobacco","volume":"231","author":"M Rieping","year":"1992","journal-title":"Molecular and General Genetics MGG"},{"issue":"2","key":"ref74","doi-asserted-by":"crossref","first-page":"026126","DOI":"10.1103\/PhysRevE.67.026126","article-title":"Mixing patterns in networks","volume":"67","author":"ME Newman","year":"2003","journal-title":"Physical Review E"},{"issue":"1","key":"ref75","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1016\/j.jmb.2006.04.026","article-title":"Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks","volume":"360","author":"S Balaji","year":"2006","journal-title":"Journal of molecular biology"},{"issue":"3","key":"ref76","doi-asserted-by":"crossref","first-page":"036122","DOI":"10.1103\/PhysRevE.68.036122","article-title":"Why social networks are different from other types of networks","volume":"68","author":"ME Newman","year":"2003","journal-title":"Physical Review E"},{"issue":"7191","key":"ref77","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1038\/453047a","article-title":"Networks: teasing out the missing links","volume":"453","author":"S Redner","year":"2008","journal-title":"Nature"},{"issue":"1","key":"ref78","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1529\/biophysj.106.098004","article-title":"Hydrophobic, hydrophilic, and charged amino acid networks within protein","volume":"93","author":"M Aftabuddin","year":"2007","journal-title":"Biophysical journal"},{"issue":"11","key":"ref79","doi-asserted-by":"crossref","first-page":"5352","DOI":"10.1093\/nar\/gkv448","article-title":"Assembly constraints drive co-evolution among ribosomal constituents","volume":"43","author":"S Mallik","year":"2015","journal-title":"Nucleic Acids Research"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0137295","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,9,7]],"date-time":"2020-09-07T21:21:10Z","timestamp":1599513670000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0137295"}},"subtitle":[],"editor":[{"given":"Richard A","family":"Wilson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2015,9,1]]},"references-count":79,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2015,9,1]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0137295","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,9,1]]}}}