{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T21:54:37Z","timestamp":1790200477991,"version":"4.1.0"},"reference-count":43,"publisher":"Public Library of Science (PLoS)","issue":"2","license":[{"start":{"date-parts":[[2016,2,3]],"date-time":"2016-02-03T00:00:00Z","timestamp":1454457600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0148201","type":"journal-article","created":{"date-parts":[[2016,2,3]],"date-time":"2016-02-03T19:04:20Z","timestamp":1454526260000},"page":"e0148201","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":37,"title":["Complete Mitochondrial Genome of Three Bactrocera Fruit Flies of Subgenus Bactrocera (Diptera: Tephritidae) and Their Phylogenetic Implications"],"prefix":"10.1371","volume":"11","author":[{"given":"Hoi-Sen","family":"Yong","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sze-Looi","family":"Song","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Phaik-Eem","family":"Lim","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Praphathip","family":"Eamsobhana","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"I. Wayan","family":"Suana","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2016,2,3]]},"reference":[{"key":"ref1","first-page":"601","article-title":"Fruit flies of economic significance: their identification and bionomics","author":"IM White","year":"1992"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"297","DOI":"10.3390\/insects6020297","article-title":"An overview of pest species of <italic>Bactrocera<\/italic> fruit flies (Diptera: Tephritidae) and the integration of biopesticides with other biological approaches for their management with a focus on the Pacific Region","volume":"6","author":"RI Vargas","year":"2015","journal-title":"Insects"},{"key":"ref3","first-page":"1","article-title":"Annotated World Bibliography of Host Fruits of <italic>Bactrocera latifrons<\/italic> (Hendel) (Diptera: Tephritidae)","volume":"0289","author":"GT McQuate","year":"2013","journal-title":"Insecta Mundi"},{"key":"ref4","first-page":"39","article-title":"Development and reproductive ability of <italic>Bactrocera latifrons<\/italic> (Hendel) (Diptera: Tephritidae) on Yonaguni island, Okinawa","volume":"41","author":"T Ishida","year":"2005","journal-title":"Res Bull Plant Prot Serv Jpn"},{"key":"ref5","first-page":"83","article-title":"Occurrence of the Solanum fruit fly <italic>Bactrocera latifrons<\/italic> (Hendel) (Diptera: Tephritidae) in Tanzania","volume":"6","author":"M Mwatawala","year":"2010","journal-title":"J Afrotrop Zool"},{"key":"ref6","unstructured":"De Meyer M, Mohamed S, White IM. Invasive Fruit Fly Pests in Africa. 2011; <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.africamuseum.be\/fruitfly\/AfroAsia.htm\" xlink:type=\"simple\">www.africamuseum.be\/fruitfly\/AfroAsia.htm<\/ext-link>."},{"key":"ref7","article-title":"Tropical fruit flies (Tephritidae Dacinae) of South-East Asia: Indomalaya to North-West Australasia","author":"RAI Drew","year":"2013"},{"issue":"3","key":"ref8","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1653\/024.093.0308","article-title":"Molecular phylogeny of <italic>Bactrocera<\/italic> species (Diptera: Tephritidae: Dacini) inferred from mitochondrial sequences of 16S rDNA and COI sequences","volume":"93","author":"B Zhang","year":"2010","journal-title":"Fla Entomol"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1017\/S0007485300036166","article-title":"Genetic differentiation and relationships in five taxa of the <italic>Bactrocera dorsalis<\/italic> complex (Insecta: Diptera: Tephritidae)","volume":"85","author":"HS Yong","year":"1995","journal-title":"Bull Ent Res"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"15155","DOI":"10.1038\/srep15155","article-title":"Complete mitochondrial genome of <italic>Bactrocera arecae<\/italic> (Insecta: Tephritidae) by next-generation sequencing and molecular phylogeny of Dacini tribe","volume":"5","author":"H-S Yong","year":"2015","journal-title":"Sci Rep"},{"key":"ref11","first-page":"127","article-title":"Pupal development time, mortality, sex ratio and absence of parasitoid parasitism of <italic>Bactrocera latifrons<\/italic> (Insecta, Diptera, Tephritidae)","volume":"9","author":"HS Yong","year":"2013","journal-title":"J Sci Technol Trop"},{"issue":"6","key":"ref12","doi-asserted-by":"crossref","first-page":"e0129455","DOI":"10.1371\/journal.pone.0129455","article-title":"Multigene Phylogeography of <italic>Bactrocera caudata<\/italic> (Insecta: Tephritidae): Distinct Genetic Lineages in Northern and Southern Hemispheres","volume":"10","author":"H-S Yong","year":"2015","journal-title":"PLoS ONE"},{"key":"ref13","first-page":"29","article-title":"Molecular genetic analysis of populations: a practical approach","author":"PS White","year":"1992"},{"key":"ref14","article-title":"FastQC: a quality control tool for high throughput sequence data","author":"S Andrews","year":"2010","journal-title":"FastQC: a quality control tool for high throughput sequence data"},{"issue":"3","key":"ref15","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"SF Altschul","year":"1990","journal-title":"J Mol Biol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/j.ympev.2012.08.023","article-title":"MITOS: improved de novo metazoan mitochondrial genome annotation","volume":"69","author":"M Bernt","year":"2012","journal-title":"Mol Phylogenet Evol"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1186\/1471-2164-12-402","article-title":"BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons","volume":"12","author":"NF Alikhan","year":"2011","journal-title":"BMC Genomics"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","article-title":"The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools","volume":"24","author":"JD Thompson","year":"1997","journal-title":"Nucl Acids Res"},{"key":"ref19","first-page":"95","article-title":"BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT","volume":"41","author":"TA Hall","year":"1999","journal-title":"Nucl Acids Symp Ser"},{"issue":"4","key":"ref20","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability","volume":"30","author":"K Katoh","year":"2013","journal-title":"Mol Biol Evol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"962","DOI":"10.1111\/j.1471-8286.2007.01807.x","article-title":"Kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data","volume":"7","author":"AS Tanabe","year":"2007","journal-title":"Mol Ecol Notes"},{"key":"ref22","first-page":"267","article-title":"Proceedings of the 2nd International Symposium on Information Theory","author":"H Akaike","year":"1973"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1214\/aos\/1176344136","article-title":"Estimating the dimension of a model","volume":"6","author":"G Schwarz","year":"1978","journal-title":"Ann Stat"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/1471-2148-4-18","article-title":"Treefinder: a powerful graphical analysis environment for molecular phylogenetics","volume":"4","author":"G Jobb","year":"2004","journal-title":"BMC Evol Biol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","article-title":"MrBayes: Bayesian Inference of phylogenetic trees","volume":"17","author":"JP Huelsenbeck","year":"2001","journal-title":"Bioinformatics"},{"key":"ref26","unstructured":"Rambaut A. FigTree (version 1.4.0). 2012. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/tree.bio.ed.ac.uk\/software\/figtree\/\" xlink:type=\"simple\">http:\/\/tree.bio.ed.ac.uk\/software\/figtree\/<\/ext-link>."},{"key":"ref27","article-title":"Version 4","author":"DL Swofford","year":"2002"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1146\/annurev-ento-011613-162007","article-title":"Insect mitochondrial genomics: implications for evolution and phylogeny","volume":"59","author":"SL Cameron","year":"2013","journal-title":"Annu Rev Entomol"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"8527","DOI":"10.1038\/srep08527","article-title":"Higher-level phylogeny of paraneopteran insects inferred from mitochondrial genome sequences","volume":"5","author":"H Li","year":"2015","journal-title":"Sci Rep"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1038\/290470a0","article-title":"tRNA punctuation model of RNA processing in human mitochondria","volume":"290","author":"D Ojala","year":"1981","journal-title":"Nature"},{"issue":"7","key":"ref31","doi-asserted-by":"crossref","first-page":"2833","DOI":"10.1093\/nar\/gkr1131","article-title":"Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements","volume":"40","author":"F J\u00fchling","year":"2012","journal-title":"Nucl Acids Res"},{"issue":"3","key":"ref32","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1017\/S0033583509990060","article-title":"Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu","volume":"42","author":"X Agirrezabala","year":"2009","journal-title":"Q Rev Biophys"},{"issue":"5","key":"ref33","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1002\/wrna.1175","article-title":"Structure and function of the T-loop structural motif in noncoding RNAs","volume":"4","author":"CW Chan","year":"2013","journal-title":"Wiley Interdiscip Rev RNA"},{"issue":"24","key":"ref34","doi-asserted-by":"crossref","first-page":"13473","DOI":"10.1073\/pnas.251549298","article-title":"Recognizing the D-loop of transfer RNAs","volume":"98","author":"TL Hendrickson","year":"2001","journal-title":"PNAS"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1016\/S1055-7903(02)00293-2","article-title":"Phylogenetic relationships among <italic>Bactrocera<\/italic> species (Diptera: Tephritidae) inferred from mitochondrial DNA sequences","volume":"26","author":"PT Smith","year":"2003","journal-title":"Mol Phyloget Evol"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1016\/j.ympev.2012.05.006","article-title":"A molecular phylogeny for the Tribe Dacini (Diptera: Tephritidae): Systematic and biogeographic implications","volume":"64","author":"MN Krosch","year":"2012","journal-title":"Mol Phylogenet Evol"},{"issue":"3","key":"ref37","first-page":"343","article-title":"DNA barcoding and phylogenetic analysis of common species of the genus <italic>Bactrocera<\/italic> (Diptera: Tephritidae) based on mtDNA COI gene sequences","volume":"57","author":"S-S Liu","year":"2014","journal-title":"Acta Entomol Sinica"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1016\/j.ympev.2015.01.007","article-title":"Higher phylogeny of frugivorous flies (Diptera, Tephritidae, Dacini): Localised partition conflicts and a novel generic classification","volume":"85","author":"M Virgilio","year":"2015","journal-title":"Mol Phylogent Evol"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1111\/jen.12047","article-title":"Multi-gene phylogenetic analysis of south-east Asian pest members of the <italic>Bactrocera dorsalis<\/italic> species complex (Diptera: Tephritidae) does not support current taxonomy","volume":"138","author":"LM Boykin","year":"2014","journal-title":"J Appl Entomol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"456","DOI":"10.1111\/syen.12113","article-title":"Synonymization of key pest species within the <italic>Bactrocera dorsalis<\/italic> species complex (Diptera: Tephritidae): taxonomic changes based on a review of 20 years of integrative morphological, molecular, cytogenetic, behavioural and chemoecological data","volume":"40","author":"MK Schutze","year":"2014","journal-title":"Syst Entomol.b"},{"issue":"2","key":"ref41","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/j.gene.2015.05.066","article-title":"The mitochondrial genome of the peach fruit fly, <italic>Bactrocera zonata<\/italic> (Saunders) Diptera: Tephritidae): Complete DNA sequence, genome organization, and phylogenetic analysis with other tephritids using next generation DNA sequencing","volume":"569","author":"JS Choudhary","year":"2015","journal-title":"Gene"},{"issue":"4","key":"ref42","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1653\/024.094.0441","article-title":"Molecular Identification and Phylogeny of <italic>Bactrocera<\/italic> Species (Diptera: Tephritidae)","volume":"94","author":"R Asokan","year":"2011","journal-title":"Fla Entomol"},{"key":"ref43","first-page":"1","article-title":"Phylogenetic analyses of <italic>Bactrocera<\/italic> fruit flies (Diptera: Tephritidae) based on nucleotide sequences of the mitochondrial COI and COII genes","volume":"44","author":"S Nakahara","year":"2008","journal-title":"Res Bull Pl Prot Japan"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0148201","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,20]],"date-time":"2018-10-20T13:02:56Z","timestamp":1540040576000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0148201"}},"subtitle":[],"editor":[{"given":"Bi-Song","family":"Yue","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2016,2,3]]},"references-count":43,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2016,2,3]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0148201","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,2,3]]}}}