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during a 2008 listeriosis outbreak in Canada","volume":"3","author":"AW Pightling","year":"2015","journal-title":"Genome Announc"},{"issue":"6","key":"ref29","doi-asserted-by":"crossref","first-page":"e01248","DOI":"10.1128\/genomeA.01248-14","article-title":"Complete genome sequence of <italic>Listeria monocytogenes<\/italic> Lm60, a strain with an enhanced cold adaptation capacity","volume":"2","author":"T Tasara","year":"2014","journal-title":"Genome Announc"},{"issue":"14","key":"ref30","doi-asserted-by":"crossref","first-page":"1718","DOI":"10.1093\/bioinformatics\/btt273","article-title":"GAGE-B: an evaluation of genome assemblers for bacterial organisms","volume":"29","author":"T Magoc","year":"2013","journal-title":"Bioinformatics"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1186\/1471-2105-15-126","article-title":"Automated ensemble assembly and validation of microbial genomes","volume":"15","author":"S Koren","year":"2014","journal-title":"BMC Bioinformatics"},{"key":"ref32","unstructured":"Aronesty E. ea-utils: &quot;Command-line tools for processing biological sequencing data&quot; 2011. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/code.google.com\/p\/ea-utils\" xlink:type=\"simple\">http:\/\/code.google.com\/p\/ea-utils<\/ext-link>"},{"issue":"5","key":"ref33","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"A Bankevich","year":"2012","journal-title":"J Comput Biol"},{"issue":"1","key":"ref34","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/bioinformatics\/btt310","article-title":"Informed and automated k-mer size selection for genome assembly","volume":"30","author":"R Chikhi","year":"2014","journal-title":"Bioinformatics"},{"issue":"8","key":"ref35","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"A Gurevich","year":"2013","journal-title":"Bioinformatics"},{"issue":"2","key":"ref36","doi-asserted-by":"crossref","first-page":"e00969","DOI":"10.1128\/mBio.00969-14","article-title":"Comparison of widely used <italic>Listeria monocytogenes<\/italic> strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity","volume":"5","author":"C B\u00e9cavin","year":"2014","journal-title":"MBio"},{"issue":"16","key":"ref37","doi-asserted-by":"crossref","first-page":"2071","DOI":"10.1093\/bioinformatics\/btp356","article-title":"Reordering contigs of draft genomes using the Mauve aligner","volume":"25","author":"AI Rissman","year":"2009","journal-title":"Bioinformatics"},{"issue":"4","key":"ref38","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","author":"B Langmead","year":"2012","journal-title":"Nature Methods"},{"key":"ref39","unstructured":"Garrison E, Marth G. Haplotype-based variant detection from short-read sequencing. arXiv Preprint; 2012. Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/arxiv.org\/abs\/1207.3907\" xlink:type=\"simple\">http:\/\/arxiv.org\/abs\/1207.3907<\/ext-link>."},{"issue":"2","key":"ref40","doi-asserted-by":"crossref","first-page":"R12","DOI":"10.1186\/gb-2004-5-2-r12","article-title":"Versatile and open software for comparing large genomes","volume":"5","author":"S Kurtz","year":"2004","journal-title":"Genome Biol"},{"issue":"12","key":"ref41","doi-asserted-by":"crossref","first-page":"2725","DOI":"10.1093\/molbev\/mst197","article-title":"MEGA6: Molecular Evolutionary Genetics Analysis version 6.0","volume":"30","author":"K Tamura","year":"2013","journal-title":"Mol Biol Evol"},{"issue":"23","key":"ref42","doi-asserted-by":"crossref","first-page":"7206","DOI":"10.1128\/JB.01041-09","article-title":"Comparative genome analysis of <italic>Listeria<\/italic> bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site","volume":"191","author":"J Dorscht","year":"2009","journal-title":"J Bacteriol"},{"issue":"2","key":"ref43","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1046\/j.1365-2958.2000.01720.x","article-title":"Complete nucleotide sequence, molecular analysis and genome structure of bacteriophage A118 of <italic>Listeria monocytogenes<\/italic>: implications for phage evolution","volume":"35","author":"MJ Loessner","year":"2000","journal-title":"Mol Microbiol"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"W347","DOI":"10.1093\/nar\/gkr485","article-title":"PHAST: a fast phage search tool","volume":"39","author":"Y Zhou","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: architecture and applications","volume":"10","author":"C Camacho","year":"2009","journal-title":"BMC Bioinformatics"},{"issue":"7","key":"ref46","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","article-title":"Easyfig: a genome comparison visualizer","volume":"27","author":"MJ Sullivan","year":"2011","journal-title":"Bioinformatics"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"W52","DOI":"10.1093\/nar\/gkm360","article-title":"CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats","volume":"35","author":"I Grissa","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1186\/1471-2105-11-461","article-title":"Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions","volume":"11","author":"C Laing","year":"2010","journal-title":"BMC Bioinformatics"},{"issue":"20","key":"ref49","doi-asserted-by":"crossref","first-page":"20678","DOI":"10.1074\/jbc.M314284200","article-title":"Interference of mRNA function by sequence-specific endoribonuclease PemK","volume":"279","author":"J Zhang","year":"2004","journal-title":"J Biol Chem"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1186\/1471-2164-14-47","article-title":"Reassessment of the <italic>Listeria monocytogenes<\/italic> pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome","volume":"14","author":"C Kuenne","year":"2013","journal-title":"BMC Genomics"},{"issue":"1","key":"ref51","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1093\/nar\/gkt847","article-title":"Type I restriction enzymes and their relatives","volume":"42","author":"WA Loenen","year":"2014","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"ref52","doi-asserted-by":"crossref","first-page":"e1004065","DOI":"10.1371\/journal.pgen.1004065","article-title":"A PNPase dependent CRISPR System in <italic>Listeria<\/italic>","volume":"10","author":"N Sesto","year":"2014","journal-title":"PLoS Genetics"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1186\/1745-6150-3-8","article-title":"MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases","volume":"3","author":"LM Iyer","year":"2008","journal-title":"Biol Direct"},{"issue":"5","key":"ref54","doi-asserted-by":"crossref","first-page":"e1000449","DOI":"10.1371\/journal.ppat.1000449","article-title":"<italic>In vivo<\/italic> transcriptional profiling of <italic>Listeria monocytogenes<\/italic> and mutagenesis identify new virulence factors involved in infection","volume":"5","author":"A Camejo","year":"2009","journal-title":"PLoS Pathog"},{"issue":"7","key":"ref55","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1016\/0092-8674(91)90009-N","article-title":"Entry of <italic>L<\/italic>. <italic>monocytogenes<\/italic> into cells is mediated by internalin, a repeat protein reminiscent of surface antigens from Gram-positive cocci","volume":"65","author":"JL Gaillard","year":"1991","journal-title":"Cell"},{"issue":"1","key":"ref56","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1007\/s00775-009-0590-9","article-title":"Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology","volume":"15","author":"DJ Kosman","year":"2010","journal-title":"J Biol Inorg Chem"},{"issue":"10","key":"ref57","doi-asserted-by":"crossref","first-page":"3049","DOI":"10.1128\/jb.176.10.3049-3061.1994","article-title":"Plasmid-borne cadmium resistance genes in <italic>Listeria monocytogenes<\/italic> are present on Tn<italic>5422<\/italic>, a novel transposon closely related to Tn917","volume":"176","author":"M Lebrun","year":"1994","journal-title":"J Bacteriol"},{"issue":"19","key":"ref58","doi-asserted-by":"crossref","first-page":"6067","DOI":"10.1128\/AEM.01751-13","article-title":"Conservation and distribution of the benzalkonium chloride resistance cassette <italic>bcrABC<\/italic> in <italic>Listeria monocytogenes<\/italic>","volume":"79","author":"V Dutta","year":"2013","journal-title":"Appl Environ Microbiol"},{"issue":"2","key":"ref59","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1111\/1574-6968.12626","article-title":"The <italic>Listeria monocytogenes<\/italic> transposon Tn<italic>6188<\/italic> provides increased tolerance to various quaternary ammonium compounds and ethidium bromide","volume":"361","author":"A M\u00fcller","year":"2014","journal-title":"FEMS Microbiol Lett"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1186\/1471-2164-14-800","article-title":"Evidence of microevolution of <italic>Salmonella<\/italic> Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm","volume":"14","author":"J Hawkey","year":"2013","journal-title":"BMC Genomics"},{"issue":"1614","key":"ref61","doi-asserted-by":"crossref","first-page":"20120202","DOI":"10.1098\/rstb.2012.0202","article-title":"Bacterial genomes in epidemiology\u2014present and future","volume":"368","author":"NJ Croucher","year":"2013","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"issue":"7","key":"ref62","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.4315\/0362-028X-65.7.1129","article-title":"Transfer of persistent <italic>Listeria monocytogenes<\/italic> contamination between food-processing plants associated with a dicing machine","volume":"65","author":"JM Lund\u00e9n","year":"2002","journal-title":"J Food 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