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Dos Anjos","year":"2016","journal-title":"AIDS Res Hum Retroviruses"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"3797","DOI":"10.1093\/bioinformatics\/bti607","article-title":"An automated genotyping system for analysis of HIV-1 and other microbial sequences","volume":"21","author":"T de Oliveira","year":"2005","journal-title":"Bioinformatics"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","article-title":"The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools","volume":"25","author":"JD Thompson","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.1093\/molbev\/msn083","article-title":"jModelTest: phylogenetic model averaging","volume":"25","author":"D Posada","year":"2008","journal-title":"Mol Biol Evol"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","article-title":"New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0","volume":"59","author":"S Guindon","year":"2010","journal-title":"Syst Biol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"W557","DOI":"10.1093\/nar\/gki352","article-title":"PHYML Online\u2014a web server for fast maximum likelihood-based phylogenetic inference","volume":"33","author":"S Guindon","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1080\/10635150600755453","article-title":"Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative","volume":"55","author":"M Anisimova","year":"2006","journal-title":"Syst Biol"},{"key":"ref20","unstructured":"Rambaut A (2009) FigTree v1.4: Tree Figure Drawing Tool. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/treebioedacuk\/software\/figtree\/\" xlink:type=\"simple\">http:\/\/treebioedacuk\/software\/figtree\/<\/ext-link>."},{"key":"ref21","doi-asserted-by":"crossref","first-page":"1307","DOI":"10.1093\/genetics\/161.3.1307","article-title":"Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data","volume":"161","author":"AJ Drummond","year":"2002","journal-title":"Genetics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1186\/1471-2148-7-214","article-title":"BEAST: Bayesian evolutionary analysis by sampling trees","volume":"7","author":"AJ Drummond","year":"2007","journal-title":"BMC Evol Biol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"1370","DOI":"10.1093\/bioinformatics\/btp244","article-title":"Many-core algorithms for statistical phylogenetics","volume":"25","author":"MA Suchard","year":"2009","journal-title":"Bioinformatics"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"e88","DOI":"10.1371\/journal.pbio.0040088","article-title":"Relaxed phylogenetics and dating with confidence","volume":"4","author":"AJ Drummond","year":"2006","journal-title":"PLoS Biol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"1185","DOI":"10.1093\/molbev\/msi103","article-title":"Bayesian coalescent inference of past population dynamics from molecular sequences","volume":"22","author":"AJ Drummond","year":"2005","journal-title":"Mol Biol Evol"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"4425","DOI":"10.1073\/pnas.0407534102","article-title":"Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups","volume":"102","author":"S Hue","year":"2005","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1097\/QAI.0b013e3181eb3002","article-title":"Population dynamics of HIV-1 subtype B in a cohort of men-having-sex-with-men in Rome, Italy","volume":"55","author":"G Zehender","year":"2010","journal-title":"J Acquir Immune Defic Syndr"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"e25286","DOI":"10.1371\/journal.pone.0025286","article-title":"Phylodynamics of HIV-1 subtype B among the men-having-sex-with-men (MSM) population in Hong Kong","volume":"6","author":"JH Chen","year":"2011","journal-title":"PLoS ONE"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"e1000520","DOI":"10.1371\/journal.pcbi.1000520","article-title":"Bayesian phylogeography finds its roots","volume":"5","author":"P Lemey","year":"2009","journal-title":"PLoS Comput Biol"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1002\/cjs.5550360302","article-title":"Bayesian analysis of elapsed times in continuous-time Markov chains","volume":"26","author":"MAR Ferreira","year":"2008","journal-title":"Canadian Journal of Statistics"},{"key":"ref31","unstructured":"Rambaut A, Drummond A (2007) Tracer v1.6. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/treebioedacuk\/software\/tracer\/\" xlink:type=\"simple\">http:\/\/treebioedacuk\/software\/tracer\/<\/ext-link>."},{"key":"ref32","doi-asserted-by":"crossref","first-page":"2910","DOI":"10.1093\/bioinformatics\/btr481","article-title":"SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics","volume":"27","author":"F Bielejec","year":"2011","journal-title":"Bioinformatics"},{"key":"ref33","author":"V Leonardi","year":"2000"},{"key":"ref34","first-page":"67","article-title":"Brasileiros na Guiana francesa. Novas migra\u00e7\u00f5es internacionais ou exporta\u00e7\u00e3o de tens\u00f5es sociais na Amaz\u00f4nia?","author":"R Arouck","year":"2000","journal-title":"Lusotopie"},{"key":"ref35","first-page":"129","article-title":"Trabalhadores brasileiros na Guiana Francesa: entre a invisibilidade e o desemprego","volume":"4","author":"CL Soares","year":"2011","journal-title":"PRACS: Revista de Humanidades do Curso de Ci\u00eancias Sociais da UNIFAP"},{"key":"ref36","unstructured":"Martins CC (2011) Migra\u00e7\u00e3o transfronteri\u00e7a na Amaz\u00f4nia: Brasileiros na Guiana Francesa (in Portuguese). Anais do III Simp\u00f3sio de P\u00f3s-Gradua\u00e7\u00e3o em Rela\u00e7\u00f5es Internacionais do Programa \u201cSan Tiago Dantas\u201d (UNESP, UNICAMP e PUC\/SP) Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/wwwunespbr\/santiagodantassp\" xlink:type=\"simple\">http:\/\/wwwunespbr\/santiagodantassp<\/ext-link>."},{"key":"ref37","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1590\/S0103-40142006000200016","article-title":"Processos migrat\u00f3rios na fronteira Brasil-Guiana","volume":"20","author":"MC Pereira","year":"2006","journal-title":"Estudos Avan\u00e7ados"},{"key":"ref38","unstructured":"Corbin HP (2007) Brazilian migration to Guyana as a livelihood strategy: a case study approach. Available: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/wwwrepositorioufpabr\/jspui\/bitstream\/2011\/1966\/1\/Dissertacao_BrazilianMigrationGuyanapdf\" xlink:type=\"simple\">http:\/\/wwwrepositorioufpabr\/jspui\/bitstream\/2011\/1966\/1\/Dissertacao_BrazilianMigrationGuyanapdf<\/ext-link>."},{"key":"ref39","doi-asserted-by":"crossref","first-page":"5","DOI":"10.18352\/erlacs.9600","article-title":"Moving Frontiers in the Amazon: Brazilian Small-Scale Gold Miners in Suriname","author":"M de Theije","year":"2009","journal-title":"European Review of Latin American and Caribbean Studies"},{"key":"ref40","author":"M Heemskerk","year":"2014"},{"key":"ref41","first-page":"23","article-title":"O vertiginoso crescimento populacional de Roraima e seus impactos socioambientais","volume":"15","author":"AMA Diniz","year":"2005","journal-title":"Caderno de Geografia"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1590\/S0103-40142006000200019","article-title":"Imigra\u00e7\u00e3o de nordestinos para Roraima","volume":"20","author":"ALF Vale","year":"2006","journal-title":"Estudos Avan\u00e7ados"},{"key":"ref43","article-title":"Shaping Brazil: The Role of International Migration","author":"EF Amaral","year":"2005","journal-title":"The Online Journal of the Migration Policy Institute"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0162112","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,7]],"date-time":"2022-07-07T22:05:13Z","timestamp":1657231513000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0162112"}},"subtitle":[],"editor":[{"given":"Massimo","family":"Ciccozzi","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2016,9,7]]},"references-count":43,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2016,9,7]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0162112","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,9,7]]}}}