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Method 1623: Cryptosporidium and Giardia in water by filtration. IMS\/IFA EPA-821-R99-006. Office of Water, U.S. Environment Protection Agency, Washington, D.C. 2012."},{"issue":"7","key":"ref46","doi-asserted-by":"crossref","first-page":"3848","DOI":"10.1128\/AEM.71.7.3848-3857.2005","article-title":"Environmental temperature controls <italic>Cryptosporidium<\/italic> oocyst metabolic rate and associated retention of infectivity","volume":"71","author":"BJ King","year":"2005","journal-title":"Appl Environ Microbiol"},{"issue":"14","key":"ref47","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1016\/j.ijpara.2014.08.004","article-title":"Comparison of next-generation droplet digital PCR (ddPCR) with quantitative PCR (qPCR) for enumeration of <italic>Cryptosporidium<\/italic> oocysts in faecal samples","volume":"44","author":"R Yang","year":"2014","journal-title":"Int J Parasitol"},{"issue":"3","key":"ref48","doi-asserted-by":"crossref","first-page":"551","DOI":"10.1016\/j.exppara.2013.09.003","article-title":"A new set of primers directed to 18S rRNA gene for molecular identification of <italic>Cryptosporidium<\/italic> spp. and their performance in the detection and differentiation of oocysts shed by synanthropic rodents","volume":"135","author":"SOS Silva","year":"2013","journal-title":"Exp Parasitol"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1007\/s00436-003-0834-5","article-title":"Genetic diversity of <italic>Cryptosporidium<\/italic> spp. in cattle in Michigan: implications for understanding the transmission dynamics","volume":"90","author":"MM Peng","year":"2003","journal-title":"Parasitol Res"},{"issue":"11","key":"ref50","doi-asserted-by":"crossref","first-page":"5254","DOI":"10.1128\/JCM.41.11.5254-5257.2003","article-title":"Molecular surveillance of <italic>Cryptosporidium<\/italic> spp. in raw wastewater in Milwaukee: implications for understanding outbreak occurrence and transmission dynamics","volume":"41","author":"L Zhou","year":"2003","journal-title":"J Clin Microbiol"},{"issue":"12","key":"ref51","doi-asserted-by":"crossref","first-page":"5492","DOI":"10.1128\/AEM.66.12.5492-5498.2000","article-title":"Identification of species and sources of <italic>Cryptosporidium<\/italic> oocysts in storm waters with a small-subunit rRNA-based diagnostic and genotyping tool","volume":"66","author":"L Xiao","year":"2000","journal-title":"Appl Environ Microbiol"},{"issue":"5","key":"ref52","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1111\/zph.12074","article-title":"PCR slippage across the ML-2 microsatellite of the <italic>Cryptosporidium<\/italic> MIC1 locus enables development of a PCR assay capable of distinguishing the zoonotic <italic>Cryptosporidium parvum<\/italic> from other human infectious <italic>Cryptosporidium<\/italic> species","volume":"61","author":"MA Webber","year":"2014","journal-title":"Zoonoses Public Health"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"2744","DOI":"10.1128\/JCM.41.6.2744-2747.2003","article-title":"Subgenotype analysis of <italic>Cryptosporidium<\/italic> isolates from humans, cattle, and zoo ruminants in Portugal","volume":"41","author":"M Alves","year":"2003","journal-title":"J Clin Microbiol"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"918","DOI":"10.1128\/JCM.01733-10","article-title":"Detection and differentiation of <italic>Cryptosporidium<\/italic> spp. in human clinical samples by use of real-time PCR","volume":"49","author":"SJ Hadfield","year":"2011","journal-title":"J Clin Microbiol"},{"issue":"5","key":"ref55","doi-asserted-by":"crossref","first-page":"825","DOI":"10.2307\/3284275","article-title":"Differentiation between human and animal isolates of <italic>Cryptosporidium parvum<\/italic> using rDNA sequencing and direct PCR analysis","volume":"83","author":"UM Morgan","year":"1997","journal-title":"J Parasitol"},{"issue":"9","key":"ref56","doi-asserted-by":"crossref","first-page":"3356","DOI":"10.1128\/IAI.00436-13","article-title":"Identification and characterization of <italic>Cryptosporidium parvum<\/italic> Clec, a novel C-type lectin domain-containing mucin-like glycoprotein","volume":"81","author":"S Bhalchandra","year":"2013","journal-title":"Infect Immun"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"4117","DOI":"10.1128\/IAI.68.7.4117-4134.2000","article-title":"Cloning and sequence analysis of a highly polymorphic <italic>Cryptosporidium parvum<\/italic> gene encoding a 60-kilodalton glycoprotein and characterization of its 15- and 45-kilodalton zoite surface antigen products","volume":"68","author":"WB Strong","year":"2000","journal-title":"Infect Immun"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"217","DOI":"10.3201\/eid2002.121797","article-title":"Subtyping <italic>Cryptosporidium ubiquitum<\/italic>, a zoonotic pathogen emerging in humans","volume":"20","author":"N Li","year":"2014","journal-title":"Emerg. 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isolates in Barcelona: A Five-Year Study","volume":"10","author":"R Segura","year":"2015","journal-title":"PLoS One"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"1984","DOI":"10.1016\/j.meegid.2012.08.004","article-title":"Genetic characterisation of <italic>Cryptosporidium<\/italic> and <italic>Giardia<\/italic> from dairy calves: discovery of species\/genotypes consistent with those found in humans","volume":"12","author":"H Abeywardena","year":"2012","journal-title":"Infect Genet Evol"},{"key":"ref76","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1136\/vr.156.22.710","article-title":"Natural <italic>Cryptosporidium hominis<\/italic> infections in Scottish cattle","volume":"156","author":"HV Smith","year":"2005","journal-title":"Vet Rec"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.vetpar.2006.10.001","article-title":"Wide geographic distribution of <italic>Cryptosporidium bovis<\/italic> and the deer-like genotype in bovines","volume":"144","author":"Y Feng","year":"2007","journal-title":"Vet Parasitol"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"27","DOI":"10.3347\/kjp.2006.44.1.27","article-title":"Genotype analysis of <italic>Cryptosporidium<\/italic> spp. prevalent in a rural village in Hwasun-gun, Republic of Korea","volume":"44","author":"JH Park","year":"2006","journal-title":"Korean J Parasitol"},{"issue":"8","key":"ref79","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1016\/j.ijid.2012.12.003","article-title":"Genetic diversity of <italic>Cryptosporidium<\/italic> isolates from patients in North India","volume":"17","author":"P Sharma","year":"2013","journal-title":"Int J Infect Dis"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1128\/JCM.02973-13","article-title":"Multilocus sequence typing of an emerging <italic>Cryptosporidium hominis<\/italic> subtype in the United States","volume":"52","author":"Y Feng","year":"2014","journal-title":"J Clin Microbiol"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1186\/s12864-015-1517-1","article-title":"Comparative genomic analysis reveals occurrence of genetic recombination in virulent <italic>Cryptosporidium hominis<\/italic> subtypes and telomeric gene duplications in <italic>Cryptosporidium parvum<\/italic>","volume":"16","author":"Y Guo","year":"2015","journal-title":"BMC Genomics"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"1800","DOI":"10.3201\/eid1411.080239","article-title":"Unusual <italic>Cryptosporidium<\/italic> genotypes in human cases of diarrhea","volume":"14","author":"G Robinson","year":"2008","journal-title":"Emerg Infect Dis"},{"issue":"1","key":"ref83","doi-asserted-by":"crossref","first-page":"45","DOI":"10.4269\/ajtmh.14-0488","article-title":"Correlation between diarrhea severity and oocyst count via quantitative PCR or fluorescence microscopy in experimental cryptosporidiosis 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