{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,6]],"date-time":"2025-11-06T20:05:03Z","timestamp":1762459503221,"version":"3.37.3"},"reference-count":44,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2017,8,22]],"date-time":"2017-08-22T00:00:00Z","timestamp":1503360000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["R01AI017252"],"award-info":[{"award-number":["R01AI017252"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0183535","type":"journal-article","created":{"date-parts":[[2017,8,22]],"date-time":"2017-08-22T13:38:22Z","timestamp":1503409102000},"page":"e0183535","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":14,"title":["Allergen homologs in the Euroglyphus maynei draft genome"],"prefix":"10.1371","volume":"12","author":[{"given":"S. Dean","family":"Rider","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marjorie S.","family":"Morgan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1358-4159","authenticated-orcid":true,"given":"Larry G.","family":"Arlian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2017,8,22]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1007\/s11882-002-0074-2","article-title":"Dust mite allergens: ecology and distribution","volume":"2","author":"LG Arlian","year":"2002","journal-title":"Curr Allergy Asthma Rep"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/S0889-8561(03)00005-5","article-title":"Biology, ecology, and prevalence of dust mites","volume":"23","author":"LG Arlian","year":"2003","journal-title":"Immunol Allergy Clin North Am"},{"key":"ref3","first-page":"169","article-title":"House dust mite species and allergen levels in Galicia, Spain: a cross-sectional, multicenter, comparative study","volume":"16","author":"M Boquete","year":"2006","journal-title":"J Investig Allergol Clin Immunol"},{"key":"ref4","doi-asserted-by":"crossref","DOI":"10.1007\/978-90-481-2224-0","article-title":"Dust mites","author":"M Colloff","year":"2009"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/S0091-6749(05)80006-5","article-title":"Prevalence of dust mites in the homes of people with asthma living in eight different geographic areas of the United States","volume":"90","author":"LG Arlian","year":"1992","journal-title":"J Allergy Clin Immunol"},{"key":"ref6","first-page":"237","article-title":"Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness","volume":"3148","author":"ZQ Zhang","year":"2011","journal-title":"Zootaxa"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1186\/s13071-015-1198-2","article-title":"Draft genome of the scabies mite","volume":"8","author":"SD Rider","year":"2015","journal-title":"Parasites & vectors"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1111\/j.1398-9995.1977.tb02575.x","article-title":"House dust mites in Switzerland. III. Allergenic properties of the mites","volume":"32","author":"Y Mumcuoglu","year":"1977","journal-title":"Acta Allergol"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1016\/0091-6749(89)90069-9","article-title":"Clinical significance and allergenic cross-reactivity of <italic>Euroglyphus maynei<\/italic> and other nonpyroglyphid and pyroglyphid mites","volume":"83","author":"M van Hage-Hamsten","year":"1989","journal-title":"J Allergy Clin Immunol"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"893","DOI":"10.1111\/j.1365-2222.1997.tb01229.x","article-title":"Skin test and crossreactivity studies with <italic>Euroglyphus maynei<\/italic> and <italic>Dermatophagoides pteronyssinus<\/italic>","volume":"27","author":"SF Kemp","year":"1997","journal-title":"Clin Exp Allergy"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1007\/BF01201499","article-title":"A comparative study of allergenic and potentially allergenic enzymes from <italic>Dermatophagoides pteronyssinus<\/italic>, <italic>D<\/italic>. <italic>farinae<\/italic> and <italic>Euroglyphus maynei<\/italic>","volume":"16","author":"GA Stewart","year":"1992","journal-title":"Exp Appl Acarol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1016\/0091-6749(93)90219-6","article-title":"Allergenicity of <italic>Euroglyphus maynei<\/italic> and its cross-reactivity with <italic>Dermatophagoides<\/italic> species","volume":"91","author":"LG Arlian","year":"1993","journal-title":"J Allergy Clin Immunol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1111\/j.1365-2222.1993.tb00305.x","article-title":"Comparative IgE responses to extracts of five species of house dust mite, using western blotting","volume":"23","author":"MR Hill","year":"1993","journal-title":"Clin Exp Allergy"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1016\/S1081-1206(10)63337-6","article-title":"Cross-allergenicity of the house dust mites <italic>Euroglyphus maynei<\/italic> and <italic>Blomia tropicalis<\/italic>","volume":"77","author":"MS Morgan","year":"1996","journal-title":"Ann Allergy Asthma Immunol"},{"key":"ref15","first-page":"285","article-title":"Extracts from various mite species contain cross-reactive and noncross-reactive IgE epitopes. A RAST inhibition study","volume":"8","author":"JC Garcia-Robaina","year":"1998","journal-title":"J Investig Allergol Clin Immunol"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1016\/j.jaci.2014.09.031","article-title":"The draft genome, transcriptome, and microbiome of <italic>Dermatophagoides farinae<\/italic> reveal a broad spectrum of dust mite allergens","volume":"135","author":"TF Chan","year":"2015","journal-title":"J Allergy Clin Immunol"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1016\/j.ijpara.2007.05.011","article-title":"Tick genomics: the <italic>Ixodes<\/italic> genome project and beyond","volume":"37","author":"J Pagel Van Zee","year":"2007","journal-title":"Int J Parasitol"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1007\/s10493-008-9227-x","article-title":"The nuclear genome of the phytoseiid <italic>Metaseiulus occidentalis<\/italic> (Acari: Phytoseiidae) is among the smallest known in arthropods","volume":"47","author":"A Jeyaprakash","year":"2009","journal-title":"Exp Appl Acarol"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1038\/nature10640","article-title":"The genome of <italic>Tetranychus urticae<\/italic> reveals herbivorous pest adaptations","volume":"479","author":"M Grbic","year":"2011","journal-title":"Nature"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1159\/000381854","article-title":"Population growth and allergen content of cultured <italic>Euroglyphus maynei<\/italic> house dust mites","volume":"166","author":"MS Morgan","year":"2015","journal-title":"Int Arch Allergy Immunol"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/bioinformatics\/btt310","article-title":"Informed and automated k-mer size selection for genome assembly","volume":"30","author":"R Chikhi","year":"2014","journal-title":"Bioinformatics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1186\/1748-7188-8-22","article-title":"Space-efficient and exact de Bruijn graph representation based on a Bloom filter","volume":"8","author":"R Chikhi","year":"2013","journal-title":"Algorithms Mol Biol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"578","DOI":"10.1093\/bioinformatics\/btq683","article-title":"Scaffolding pre-assembled contigs using SSPACE","volume":"27","author":"M Boetzer","year":"2011","journal-title":"Bioinformatics"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"B Langmead","year":"2009","journal-title":"Genome Biol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1007\/s00122-002-1031-0","article-title":"Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (<italic>Hordeum vulgare<\/italic> L.)","volume":"106","author":"T Thiel","year":"2003","journal-title":"Theor Appl Genet"},{"key":"ref26","article-title":"BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs","author":"FA Simao","year":"2015","journal-title":"Bioinformatics"},{"key":"ref27","first-page":"Unit 4.10","article-title":"Curr Protoc Bioinformatics","volume":"Chapter 4","author":"M Tarailo-Graovac","year":"2009"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1186\/1471-2105-5-59","article-title":"Gene finding in novel genomes","volume":"5","author":"I Korf","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1186\/1471-2105-7-62","article-title":"Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources","volume":"7","author":"M Stanke","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1093\/bioinformatics\/btm071","article-title":"CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes","volume":"23","author":"G Parra","year":"2007","journal-title":"Bioinformatics"},{"key":"ref31","unstructured":"Stanke M. Orthoparahomlist.pl script. 2011. <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/bioinf.uni-greifswald.de\/bioinf\/bioinfprakt11\/ex3\/orthoparahomlist.pl\" xlink:type=\"simple\">http:\/\/bioinf.uni-greifswald.de\/bioinf\/bioinfprakt11\/ex3\/orthoparahomlist.pl<\/ext-link>."},{"key":"ref32","doi-asserted-by":"crossref","first-page":"3674","DOI":"10.1093\/bioinformatics\/bti610","article-title":"Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research","volume":"21","author":"A Conesa","year":"2005","journal-title":"Bioinformatics"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/msb.2011.75","article-title":"Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega","volume":"7","author":"F Sievers","year":"2011","journal-title":"Mol Syst Biol"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"W695","DOI":"10.1093\/nar\/gkq313","article-title":"A new bioinformatics analysis tools framework at EMBL-EBI","volume":"38","author":"M Goujon","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"1762","DOI":"10.1093\/gbe\/evw048","article-title":"Genome sequencing of the phytoseiid predatory mite <italic>Metaseiulus occidentalis<\/italic> reveals completely atomized <italic>hox<\/italic> genes and superdynamic intron evolution","volume":"8","author":"MA Hoy","year":"2016","journal-title":"Genome Biol Evol"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1016\/j.alit.2015.05.004","article-title":"Hierarchy and molecular properties of house dust mite allergens","volume":"64","author":"WR Thomas","year":"2015","journal-title":"Allergol Int"},{"issue":"Suppl 1","key":"ref37","first-page":"74","article-title":"Newly described house dust mite allergens","author":"A Tategaki","year":"2000","journal-title":"Allergy Clin Immunol Int"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"1818","DOI":"10.1074\/mcp.M112.027136","article-title":"<italic>Dermatophagoides farinae<\/italic> allergens diversity identification by proteomics","volume":"12","author":"S An","year":"2013","journal-title":"Mol Cell Proteomics"},{"key":"ref39","unstructured":"Liang Z-, Lin J-, Liu Z-, Yang P-, Wu Y-, Liu X-. Cloning, expression, purification and immunological activity of genes from Dermatophagoides farinae. unpublished. 2014."},{"key":"ref40","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1007\/s11882-016-0649-y","article-title":"House dust mite allergens: new discoveries and relevance to the allergic patient","volume":"16","author":"WR Thomas","year":"2016","journal-title":"Curr Allergy Asthma Rep"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1111\/j.0022-202X.2004.22716.x","article-title":"A multigene family of inactivated cysteine proteases in <italic>Sarcoptes scabiei<\/italic>","volume":"123","author":"DC Holt","year":"2004","journal-title":"J Invest Dermatol"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"1419","DOI":"10.1046\/j.1523-1747.2003.12621.x","article-title":"Mechanisms for a novel immune evasion strategy in the scabies mite <italic>Sarcoptes scabiei<\/italic>: a multigene family of inactivated serine proteases","volume":"121","author":"DC Holt","year":"2003","journal-title":"J Invest Dermatol"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"7809","DOI":"10.4049\/jimmunol.0804205","article-title":"Scabies mite inactivated serine protease paralogs inhibit the human complement system","volume":"182","author":"FC Bergstrom","year":"2009","journal-title":"J Immunol"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1016\/j.jmb.2009.04.082","article-title":"Structural mechanisms of inactivation in scabies mite serine protease paralogues","volume":"390","author":"K Fischer","year":"2009","journal-title":"J Mol Biol"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0183535","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,20]],"date-time":"2018-10-20T10:21:53Z","timestamp":1540030913000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0183535"}},"subtitle":[],"editor":[{"given":"Joshua B.","family":"Benoit","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2017,8,22]]},"references-count":44,"journal-issue":{"issue":"8","published-online":{"date-parts":[[2017,8,22]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0183535","relation":{},"ISSN":["1932-6203"],"issn-type":[{"type":"electronic","value":"1932-6203"}],"subject":[],"published":{"date-parts":[[2017,8,22]]}}}