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<italic>Salmonella<\/italic> infections","volume":"28","author":"JA Crump","year":"2015","journal-title":"Clin Microbiol Rev"},{"key":"ref11","unstructured":"World Health Organization (WHO). The diagnosis, treatment and prevention of typhoid fever. WHO\/V&amp;B\/03.07. Geneva: WHO; 2003; Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/apps.who.int\/iris\/handle\/10665\/68122\" xlink:type=\"simple\">http:\/\/apps.who.int\/iris\/handle\/10665\/68122<\/ext-link>."},{"key":"ref12","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1186\/s13613-015-0061-0","article-title":"Mechanisms of antimicrobial resistance in Gram-negative bacilli","volume":"5","author":"\u00c9 Rupp\u00e9","year":"2015","journal-title":"Ann Intensive Care"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"4214","DOI":"10.1128\/AAC.00663-12","article-title":"Impact of antibiotic MIC on infection outcome in patients with susceptible Gram-Negative bacteria: a systematic review and meta-Analysis","volume":"56","author":"ME Falagas","year":"2012","journal-title":"Antimicrob Agents Chemother"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.1093\/cid\/cis600","article-title":"In vitro susceptibility testing of fluoroquinolone activity against Salmonella: recent changes to CLSI standards","volume":"55","author":"RM Humphries","year":"2012","journal-title":"Clin Infect Dis"},{"key":"ref15","article-title":"Performance Standards for Antimicrobial Susceptibility Testing","year":"2016"},{"key":"ref16","unstructured":"European Committee on Antimicrobial Susceptibility Testing (EUCAST). Breakpoint tables for interpretation of MICs and zone diameters. EUCAST Version 7.1. 2017; Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/www.eucast.org\/clinical_breakpoints\/\" xlink:type=\"simple\">http:\/\/www.eucast.org\/clinical_breakpoints\/<\/ext-link>."},{"key":"ref17","doi-asserted-by":"crossref","first-page":"e0120470","DOI":"10.1371\/journal.pone.0120470","article-title":"Frequency and geographic distribution of <italic>gyrA<\/italic> and <italic>gyrB<\/italic> mutations associated with fluoroquinolone resistance in clinical <italic>Mycobacterium tuberculosis<\/italic> isolates: a systematic review","volume":"10","author":"E Avalos","year":"2015","journal-title":"PLoS ONE"},{"key":"ref18","unstructured":"World Health Organization (WHO). Antimicrobial resistance: global report on surveillance. 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Dis"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1038\/ng.3644","article-title":"Distinct <italic>Salmonella<\/italic> Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings","volume":"48","author":"NA Feasey","year":"2016","journal-title":"Nat Genet"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"e310","DOI":"10.1016\/S2214-109X(17)30022-0","article-title":"Incidence of invasive salmonella disease in sub-Saharan Africa: a multicentre population-based surveillance study","volume":"5","author":"F Marks","year":"2017","journal-title":"Lancet Glob Health"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1186\/s12889-015-2109-3","article-title":"Household antimicrobial self-medication: a systematic review and meta-analysis of the burden, risk factors and outcomes in developing countries","volume":"15","author":"M Ocan","year":"2015","journal-title":"BMC Public Health"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"e1001974","DOI":"10.1371\/journal.pmed.1001974","article-title":"Antibiotic resistance in India: drivers and opportunities for action","volume":"13","author":"R Laxminarayan","year":"2016","journal-title":"PLoS Med"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"c2096","DOI":"10.1136\/bmj.c2096","article-title":"Effect of antibiotic prescribing in primary care on antimicrobial resistance in individual patients: systematic review and meta-analysis","volume":"340","author":"C Costelloe","year":"2010","journal-title":"BMJ"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"692","DOI":"10.1016\/S1473-3099(11)70054-8","article-title":"Non-prescription antimicrobial use worldwide: a systematic review","volume":"11","author":"DJ Morgan","year":"2011","journal-title":"Lancet Infect Dis"},{"key":"ref83","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2334-11-312","article-title":"Rapid evolution of fluoroquinolone resistant <italic>Escherichia coli<\/italic> in Nigeria is temporally associated with fluoroquinolone use","volume":"11","author":"A Lamikanra","year":"2011","journal-title":"BMC Infect Dis"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1136\/bmj.333.7563.353-b","article-title":"Fluoroquinolone resistance in <italic>Salmonella<\/italic> Typhi","volume":"333","author":"FJ Cooke","year":"2006","journal-title":"BMJ"},{"key":"ref85","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1128\/AAC.01509-07","article-title":"Clinical response and outcome of infection with <italic>Salmonella enterica<\/italic> serotype Typhi with decreased susceptibility to fluoroquinolones: a United States Foodnet multi-center retrospective cohort study","volume":"52","author":"JA Crump","year":"2008","journal-title":"Antimicrob Agents Chemother"},{"key":"ref86","first-page":"105","article-title":"Predictive efficacy of nalidixic acid resistance as a marker of fluoroquinolone resistance in <italic>Salmonella enterica<\/italic> var Typhi","volume":"124","author":"P Ray","year":"2006","journal-title":"Indian J Med Res"},{"key":"ref87","doi-asserted-by":"crossref","first-page":"1271","DOI":"10.1128\/AAC.34.6.1271","article-title":"Quinolone resistance-determining region in the DNA gyrase <italic>gyrA<\/italic> gene of Escherichia coli","volume":"34","author":"H Yoshida","year":"1990","journal-title":"Antimicrob Agents Chemother"},{"key":"ref88","doi-asserted-by":"crossref","first-page":"1281","DOI":"10.1017\/S0950268810002487","article-title":"<italic>Salmonella enterica<\/italic> serovar Typhi and <italic>S<\/italic>. Paratyphi A: need to expand the QRDR region?","volume":"139","author":"J Walther-Rasmussen","year":"2011","journal-title":"Epidemiol Infect"},{"key":"ref89","first-page":"346","article-title":"The global burden of typhoid fever","volume":"82","author":"JA Crump","year":"2004","journal-title":"Bull World Health Organ"},{"key":"ref90","doi-asserted-by":"crossref","first-page":"882","DOI":"10.1086\/650733","article-title":"The global burden of nontyphoidal <italic>Salmonella<\/italic> gastroenteritis","volume":"50","author":"SE Majowicz","year":"2010","journal-title":"Clin Infect Dis"},{"key":"ref91","doi-asserted-by":"crossref","first-page":"2489","DOI":"10.1016\/S0140-6736(11)61752-2","article-title":"Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa","volume":"379","author":"NA Feasey","year":"2012","journal-title":"Lancet"},{"key":"ref92","first-page":"147","article-title":"Interaction of nalidixic acid and ciprofloxacin with wild type and mutated quinolone resistant determining region of DNA gyrase A","volume":"49","author":"J Vashist","year":"2009","journal-title":"Indian J Biochem Biophys"},{"key":"ref93","article-title":"Specific patterns of <italic>gyrA<\/italic> mutations determine the resistance difference to ciprofloxacin and levofloxacin in <italic>Klebsiella pneumoniae<\/italic> and <italic>Escherichia co<\/italic>li","volume":"13","author":"Y Fu","year":"2013","journal-title":"BMC Infect Dis"},{"key":"ref94","doi-asserted-by":"crossref","first-page":"2761","DOI":"10.1128\/AAC.06414-11","article-title":"Highly resistant <italic>Salmonella enterica<\/italic> Serovar Typhi with a novel <italic>gyrA<\/italic> mutation raises questions about the long-term efficacy of older fluoroquinolones for treating typhoid Fever","author":"KD Koirala","year":"2012","journal-title":"Antimicrob Agents Chemother"},{"key":"ref95","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1128\/AAC.00722-08","article-title":"Relationships among ciprofloxacin, gatifloxacin, levofloxacin, and norfloxacin MICs for fluoroquinolone-resistant <italic>Escherichia coli<\/italic> clinical isolates","volume":"53","author":"LB Boyd","year":"2009","journal-title":"Antimicrob Agents Chemother"},{"key":"ref96","article-title":"Genetic mechanisms of antimicrobial resistance identified in <italic>Salmonella enterica<\/italic>, <italic>Escherichia coli<\/italic>, and <italic>Enteroccocus<\/italic> spp. isolated from US food animals","volume":"4","author":"JG Frye","year":"2013","journal-title":"Front Microbiol"},{"key":"ref97","doi-asserted-by":"crossref","first-page":"1278","DOI":"10.1093\/jac\/dkr084","article-title":"International collaborative study on the occurrence of plasmid-mediated quinolone resistance in <italic>Salmonella enterica<\/italic> and <italic>Escherichia coli<\/italic> isolated from animals, humans, food and the environment in 13 European countries","volume":"66","author":"K Veldman","year":"2011","journal-title":"J Antimicrob Chemother"},{"key":"ref98","article-title":"High incidence of plasmid-mediated quinolone resistance genes among ciprofloxacin-resistant clinical isolates of <italic>Enterobacteriaceae<\/italic> at a tertiary care Hospital in Puducherry, India.","author":"T Yugendran","year":"2016","journal-title":"Peer J"},{"key":"ref99","doi-asserted-by":"crossref","first-page":"1591","DOI":"10.1099\/jmm.0.043307-0","article-title":"Detection of mutations in the <italic>gyrA<\/italic> and <italic>parC<\/italic> genes in <italic>Escherichia coli<\/italic> isolates carrying plasmid-mediated quinolone resistance genes from diseased food-producing animals","volume":"61","author":"BT Liu","year":"2012","journal-title":"J Medic Microbiol"},{"key":"ref100","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.PLAS-0006-2013","article-title":"Plasmid-mediated quinolone resistance","volume":"2","author":"GA Jacoby","year":"2014","journal-title":"Microbiol Spectr"},{"key":"ref101","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1016\/j.tim.2014.04.007","article-title":"Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success","volume":"22","author":"LS Redgrave","year":"2014","journal-title":"Trends Microbiol"},{"key":"ref102","doi-asserted-by":"crossref","first-page":"1611","DOI":"10.3201\/eid1210.060589","article-title":"Ciprofloxacin-resistant <italic>Salmonella<\/italic> Kentucky in travelers","volume":"12","author":"FX Weill","year":"2006","journal-title":"Emerg Infect Dis"},{"key":"ref103","doi-asserted-by":"crossref","first-page":"9","DOI":"10.3390\/antibiotics6010009","article-title":"A risk assessment of antibiotic Pan-Drug-Resistance in the UK: Bayesian analysis of an expert elicitation study","volume":"6","author":"D Carter","year":"2017","journal-title":"Antibiotics"},{"issue":"Suppl 2","key":"ref104","doi-asserted-by":"crossref","first-page":"S120","DOI":"10.1086\/428052","article-title":"Mechanisms of resistance to quinolones","volume":"41","author":"GA Jacoby","year":"2005","journal-title":"Clin Infect Dis"},{"key":"ref105","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1128\/CMR.00117-14","article-title":"The challenge of efflux mediated antibiotic resistance in Gram-negative bacteria","volume":"28","author":"X-Z Li","year":"2015","journal-title":"Clin Microbiol Rev"},{"key":"ref106","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2014.00012","article-title":"Lack of efflux mediated quinolone resistance in <italic>Salmonella<\/italic> enterica serovars Typhi and Paratyphi A","volume":"5","author":"S Baucheron","year":"2014","journal-title":"Front Microbiol"},{"key":"ref107","doi-asserted-by":"crossref","first-page":"2428","DOI":"10.1128\/AAC.00084-08","article-title":"<italic>ramR<\/italic> mutations involved in efflux-mediated multidrug resistance in <italic>Salmonella enterica<\/italic> Serovar Typhimurium","volume":"52","author":"YM Abouzeed","year":"2008","journal-title":"Antimicrob Agents Chemother"},{"key":"ref108","doi-asserted-by":"crossref","first-page":"e23471","DOI":"10.1371\/journal.pone.0023471","article-title":"The role of <italic>ramA<\/italic> on the development of ciprofloxacin resistance in <italic>Salmonella enterica<\/italic> Serovar Typhimurium","volume":"6","author":"Y Sun","year":"2011","journal-title":"PLoS ONE"},{"key":"ref109","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2013.00213","article-title":"<italic>ramR<\/italic> mutations affecting fluoroquinolone susceptibility in epidemic multidrug-resistant <italic>Salmonella enterica<\/italic> serovar Kentucky ST198","volume":"4","author":"S Baucheron","year":"2013","journal-title":"Front Microbiol"},{"key":"ref110","doi-asserted-by":"crossref","first-page":"e1001300","DOI":"10.1371\/journal.pmed.1001300","article-title":"Multidrug resistant pulmonary tuberculosis treatment regimens and patient outcomes: an individual patient data meta-analysis of 9,153 patients","volume":"9","author":"SD Ahuja","journal-title":"PLoS Med"},{"key":"ref111","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2288-14-69","article-title":"Evidence-based decision-making in infectious diseases epidemiology, prevention and control: matching research questions to study designs and quality appraisal tools","volume":"14","author":"T Harder","year":"2014","journal-title":"BMC Med Res Methodol"},{"key":"ref112","doi-asserted-by":"crossref","first-page":"666","DOI":"10.1093\/ije\/dym018","article-title":"Tools for assessing quality and susceptibility to bias in observational studies in epidemiology: a systematic review and annotated bibliography","volume":"36","author":"S Sanderson","year":"2007","journal-title":"Int J Epidemiol"},{"issue":"40","key":"ref113","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2017.22.40.16-00620","article-title":"PRECEPT: an evidence assessment framework for infectious disease epidemiology, prevention and control","volume":"22","author":"T Harder","year":"2017","journal-title":"Euro Surveill"},{"key":"ref114","article-title":"PRECEPT project","year":"2017"},{"key":"ref115","doi-asserted-by":"crossref","first-page":"e58","DOI":"10.1097\/EDE.0000000000000733","article-title":"On a square root transformation of the odds ratio for a common outcome","volume":"28","author":"TJ VanderWeele","year":"2017","journal-title":"Epidemiology"},{"key":"ref116","unstructured":"Mathur MB, VanderWeele TJ. Sensitivity analysis for unmeasured confounding in meta-analyses. 2017; <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"http:\/\/arXiv:1707.09076\" xlink:type=\"simple\">http:\/\/arXiv:1707.09076<\/ext-link> [stat.ME]."},{"key":"ref117","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1136\/emj.20.1.54","article-title":"Observational research methods. Research design II: cohort, cross-sectional, and case-control studies","volume":"20","author":"CJ Mann","year":"2003","journal-title":"Emerg Med J"},{"key":"ref118","unstructured":"Higgins J, Green S. Cochrane handbook for systematic reviews and interventions. 2011; Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/dhosth.files.wordpress.com\/2011\/12\/cochrane-handbook-for-systematic-reviews-of-interventions.pdf\" xlink:type=\"simple\">https:\/\/dhosth.files.wordpress.com\/2011\/12\/cochrane-handbook-for-systematic-reviews-of-interventions.pdf<\/ext-link>."},{"key":"ref119","doi-asserted-by":"crossref","DOI":"10.1186\/s12915-017-0357-7","article-title":"Meta-evaluation of meta-analysis: ten appraisal questions for biologists","volume":"15","author":"S Nakagawa","year":"2017","journal-title":"BMC Biology"},{"key":"ref120","doi-asserted-by":"crossref","first-page":"1277","DOI":"10.1016\/j.jclinepi.2011.01.011","article-title":"GRADE guidelines: 5. Rating the quality of evidence\u2013publication bias","volume":"64","author":"GH Guyatt","year":"2011","journal-title":"J Clin Epidemiol"},{"key":"ref121","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1128\/JCM.02422-13","article-title":"Nosocomial outbreak of <italic>Salmonella<\/italic> Typhimurium primarily affecting a pediatric ward, South Africa, 2012","volume":"52","author":"AM Smith","year":"2014","journal-title":"J Clin Microbiol"},{"key":"ref122","doi-asserted-by":"crossref","first-page":"757","DOI":"10.2471\/BLT.11.088179","article-title":"Health-care-associated infection in Africa: a systematic review","volume":"89","author":"SB Nejad","year":"2011","journal-title":"Bull World Health Organ"},{"key":"ref123","doi-asserted-by":"crossref","first-page":"2021","DOI":"10.1016\/S0140-6736(11)61622-X","article-title":"Risk and causes of paediatric hospital-acquired bacteraemia in Kilifi District Hospital, Kenya: a prospective cohort study","volume":"378","author":"AM Aiken","year":"2011","journal-title":"Lancet"},{"key":"ref124","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1093\/intqhc\/mzh005","article-title":"Rating the strength of scientific evidence: relevance for quality improvement programs","volume":"16","author":"K.N. Lohr","year":"2004","journal-title":"Int J Qual Health Care"},{"key":"ref125","unstructured":"GRADE Handbook: Handbook for grading the quality of evidence and the strength of recommendations using the GRADE approach. 2013. Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/gdt.gradepro.org\/app\/handbook\/handbook.html\" xlink:type=\"simple\">https:\/\/gdt.gradepro.org\/app\/handbook\/handbook.html<\/ext-link>."},{"key":"ref126","unstructured":"PRECEPT. Development of an evidence assessment framework for public health\/ infectious disease prevention and control in Europe. 2015; Available from: <ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" ext-link-type=\"uri\" xlink:href=\"https:\/\/www.rki.de\/EN\/Content\/Institute\/DepartmentsUnits\/InfDiseaseEpidem\/Div33\/PRECEPT\/PRECEPTFramework.pdf?blob=publi\" xlink:type=\"simple\">https:\/\/www.rki.de\/EN\/Content\/Institute\/DepartmentsUnits\/InfDiseaseEpidem\/Div33\/PRECEPT\/PRECEPTFramework.pdf?blob=publi<\/ext-link>."},{"key":"ref127","article-title":"Discovery, research and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis","author":"E Tacconelli","year":"2017","journal-title":"Lancet Infect Dis"},{"key":"ref128","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1016\/j.diagmicrobio.2014.12.003","article-title":"Improved allele-specific PCR assays for detection of clarithromycin and fluoroquinolone resistant Helicobacter pylori in gastric biopsies: identification of N87I mutation in GyrA","volume":"8","author":"AA Trespalacios","year":"2015","journal-title":"Diagn Microbiol Infect Dis"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0192575","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,14]],"date-time":"2022-08-14T06:11:32Z","timestamp":1660457492000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0192575"}},"subtitle":[],"editor":[{"given":"Jose A.","family":"Chabalgoity","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2018,2,12]]},"references-count":128,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2018,2,12]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0192575","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,2,12]]}}}