{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T03:44:18Z","timestamp":1761709458992,"version":"3.37.3"},"reference-count":64,"publisher":"Public Library of Science (PLoS)","issue":"3","license":[{"start":{"date-parts":[[2018,3,19]],"date-time":"2018-03-19T00:00:00Z","timestamp":1521417600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001602","name":"Science Foundation Ireland","doi-asserted-by":"publisher","award":["09\/RFP\/GEN2447"],"award-info":[{"award-number":["09\/RFP\/GEN2447"]}],"id":[{"id":"10.13039\/501100001602","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0194445","type":"journal-article","created":{"date-parts":[[2018,3,19]],"date-time":"2018-03-19T17:29:25Z","timestamp":1521480565000},"page":"e0194445","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":13,"title":["Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine jejunal epithelium"],"prefix":"10.1371","volume":"13","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8338-5177","authenticated-orcid":true,"given":"Kate","family":"Keogh","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sinead M.","family":"Waters","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Paul","family":"Cormican","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alan K.","family":"Kelly","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David A.","family":"Kenny","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2018,3,19]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"249","DOI":"10.2527\/jas1955.141249x","article-title":"Compensatory growth of beef cattle: the effect of hay maturity","volume":"14","author":"VR Bohman","year":"1955","journal-title":"J Anim Sci"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/S0739-7240(00)00072-2","article-title":"Mechanisms of reduced and compensatory growth","volume":"19","author":"JL Hornick","year":"2000","journal-title":"Domest Anim Endocrinol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1071\/AR9931623","article-title":"Compensatory growth in sheep and cattle II. Changes in body composition and tissue weights","volume":"44","author":"WJ Ryan","year":"1993","journal-title":"Aust J Agric Res"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/0301-6226(96)00014-0","article-title":"Compensatory growth of carcass tissues and visceral organs in beef heifers","volume":"46","author":"ESK Yambayamba","year":"1996","journal-title":"Livest Prod Sci"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"249","DOI":"10.2527\/1998.761249x","article-title":"Different periods of feed restriction before compensatory growth in Belgian Blue bulls: I. animal performance, nitrogen balance, meat characteristics, and fat composition","volume":"76","author":"JL Hornick","year":"1998","journal-title":"J Anim Sci"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"3578","DOI":"10.2527\/jas.2014-8470","article-title":"Feed restriction and subsequent re-alimentation in Holstein Friesian bulls: I. Effect on animal performance; muscle, fat and linear body measurements; and slaughter characteristics","volume":"93","author":"K Keogh","year":"2015","journal-title":"J Anim Sci"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"e0149373","DOI":"10.1371\/journal.pone.0149373","article-title":"Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine skeletal muscle","volume":"11","author":"K Keogh","year":"2016","journal-title":"PLoS One"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1186\/s12864-016-2578-5","article-title":"Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of hepatic tissue in cattle","volume":"17","author":"K Keogh","year":"2016","journal-title":"BMC Genomics"},{"issue":"5","key":"ref9","doi-asserted-by":"crossref","first-page":"e0177852","DOI":"10.1371\/journal.pone.0177852","article-title":"Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine ruminal epithelium","volume":"12","author":"K Keogh","year":"2017","journal-title":"PLoS One"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"3251","DOI":"10.2527\/1991.6983251x","article-title":"Physical and chemical components of the empty body during compensatory growth in beef steers","volume":"69","author":"GE Carstens","year":"1991","journal-title":"J Anim Sci"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"765","DOI":"10.1023\/A:1022849112100","article-title":"Effects of incremental starvation on gut mucosa","volume":"48","author":"VL Chappell","year":"2003","journal-title":"Dig Dis Sci"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1016\/S1095-6433(01)00360-9","article-title":"Restoration of the jejunal mucosa in rats refed after prolonged fasting","volume":"129","author":"S Dunel-Erb","year":"2001","journal-title":"Comp Biochem Physiol Mol Integr Physiol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"1880","DOI":"10.1111\/j.1095-8649.2012.03407.x","article-title":"Compensatory growth in juvenile roach Rulilus caspicus: effect of starvation and re-feeding on growth and digestive surface area","volume":"81","author":"M Abolfathi","year":"2012","journal-title":"J Fish Biol"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1242\/jeb.204.2.325","article-title":"Structural flexibility of the intestine of Burmese python in response to feeding","volume":"204","author":"JM Starck","year":"2001","journal-title":"J Exp Biol"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"4336","DOI":"10.2527\/jas.2011-4500","article-title":"Effects of energy and protein restriction, followed by nutritional recovery on morphological development of the gastrointestinal tract of weaned kids","volume":"91","author":"ZH Sun","year":"2013","journal-title":"J Anim Sci"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"236","DOI":"10.2527\/jas.53981","article-title":"2015. Dynamic changes in digestive capability may contribute to compensatory growth following a nutritional insult in newly weaned pigs","volume":"90","author":"CL Levesque","year":"2015","journal-title":"J Anim Sci"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1 77","DOI":"10.17221\/5767-VETMED","article-title":"Influence of the diet on the morphology of ruminal and intestinal mucosa and on intestinal carbohydrate levels in cattle","volume":"48","author":"R Zitnan","year":"2003","journal-title":"Vet Med Czech"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"3590","DOI":"10.2527\/jas.2014-8471","article-title":"Feed restriction and subsequent re-alimentation in Holstein Friesian bulls: II. Effect on blood pressure and systemic concentrations of metabolites and metabolic hormones","volume":"93","author":"K Keogh","year":"2015","journal-title":"J Anim Sci"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"980","DOI":"10.1093\/bioinformatics\/btm051","article-title":"Analyzing gene expression data in terms of gene sets: methodological issues","volume":"23","author":"JJ Goeman","year":"2007","journal-title":"Bioinformatics"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"805","DOI":"10.1017\/S0021859613000531","article-title":"Bioeconomic modeling of compensatory growth for grass-based dairy calf-to-beef production systems","volume":"152","author":"A Ashfield","year":"2014","journal-title":"J Agric Sci"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1007\/s10142-009-0138-7","article-title":"Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth","volume":"10","author":"EE Connor","year":"2010","journal-title":"Funct Integr Genomics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1867","DOI":"10.1007\/s11033-009-9622-3","article-title":"Microarray analysis of high-glucose diet-induced changes in mRNA expression in jejunums of C57BL\/6J mice reveals impairment in digestion, absorption","volume":"37","author":"D Du","year":"2010","journal-title":"Mol Bio Rep"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/BF00200579","article-title":"Human pepsinogen A (PGA): an informative gene complex located at 11q13","volume":"84","author":"FH Boudi","year":"1990","journal-title":"Hum Genet"},{"article-title":"Proteins Are Degraded to Amino Acids In: Biochemistry","year":"2002","author":"JM Berg","key":"ref24"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1016\/S0092-8674(02)00872-3","article-title":"Crucial step in cholesterol homeostasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER","volume":"110","author":"T Yang","year":"2002","journal-title":"Cell"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"1507","DOI":"10.1016\/j.celrep.2014.10.026","article-title":"Characterization of the usage of the serine metabolic network in human cancer","volume":"9","author":"M Mehrmohamadi","year":"2014","journal-title":"Cell Rep"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1093\/jn\/115.4.417","article-title":"Reduced and compensatory growth: endocrine and metabolic changes during food restriction and refeeding in steers","volume":"115","author":"JW Blum","year":"1985","journal-title":"J Nutr"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"57","DOI":"10.2527\/1996.74157x","article-title":"Hormonal status, metabolic changes, and restring metabolic rate in beef heifers undergoing compensatory growth","volume":"74","author":"ES Yambayamba","year":"1996","journal-title":"J Anim Sci"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"260","DOI":"10.2527\/1998.761260x","article-title":"Different periods of feed restriction before compensatory growth in Belgian Blue bulls: II. Plasma metabolites and hormones","volume":"76","author":"JL Hornick","year":"1998","journal-title":"J Anim Sci"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1152\/physrev.00018.2006","article-title":"Amino acid transport across mammalian intestinal and renal epithelia","volume":"88","author":"S Broer","year":"2008","journal-title":"Physiol Rev"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1079\/PNS19850011","article-title":"Protein digestion and amino acid and peptide absorption","volume":"44","author":"DB Silk","year":"1985","journal-title":"Proc Nutr Soc"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"1304","DOI":"10.1038\/ncb3231","article-title":"AMPK and PFKFB3 mediate glycolysis and survival in response to mitophagy during mitotic arrest","volume":"17","author":"E Domenech","year":"2015","journal-title":"Nat Cell Biol"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1023\/A:1025461108348","article-title":"Digestive capacity and compensatory growth in Atlantic cod <italic>(Gadus morhua)<\/italic>","volume":"26","author":"F Belanger","year":"2002","journal-title":"Fish Physiol Biochem"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"1","DOI":"10.2527\/2005.8311","article-title":"Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction","volume":"83","author":"KA Byrne","year":"2005","journal-title":"J Anim Sci"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"3239","DOI":"10.2527\/jas.2006-192","article-title":"Gene expression profiling of bovine skeletal muscle in response to and during recovery from chronic and severe under nutrition","volume":"84","author":"SA Lehnert","year":"2006","journal-title":"J Anim Sci"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1016\/S0167-4889(97)00038-4","article-title":"Annexins and membrane dynamics","volume":"1357","author":"Moss SE GerkeV","year":"1997","journal-title":"Biochim Biophys Acta"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/s12017-015-8342-1","article-title":"A candidate gene association study identifies DAPL1 as a female-specific susceptibility locus for age-related macular degeneration","volume":"17","author":"F Grassmann","year":"2015","journal-title":"Neuromolecular Medecine"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1016\/S1357-2725(01)00046-2","article-title":"S100: A multigenic family of calcium-modulated proteins of the EF-hand type with intracellular and extracellular functional roles","volume":"33","author":"R Donato","year":"2001","journal-title":"Int J Biochem Cell Biol"},{"key":"ref39","first-page":"69","article-title":"The multifunctional S100 protein family","volume":"172","author":"CW Heizmann","year":"2002","journal-title":"Methods Mol Biol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1471-2156-15-21","article-title":"Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle","volume":"15","author":"MHA Santana","year":"2014","journal-title":"BMC Genetics"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"578","DOI":"10.1111\/cbdd.12348","article-title":"Down-regulation of asparagine synthetase induces cell cycle arrest and inhibits cell proliferation of breast cancer","volume":"84","author":"H Yang","year":"2014","journal-title":"Chem Biol Drug Des"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1016\/j.celrep.2014.07.018","article-title":"The TSC complex is required for the benefits of dietary protein restriction on stress resistance in vivo","volume":"8","author":"E Harputlugil","year":"2014","journal-title":"Cell Rep"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"2437","DOI":"10.1101\/gad.1235904","article-title":"Elongation by RNA polymerase II: the short and long of it","volume":"18","author":"RJ Sims","year":"2004","journal-title":"Gene Dev"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1007\/s10534-014-9779-7","article-title":"Effects of lactoferrin on intestinal epithelial cell growth and differentiation: an in vivo and in vitro study","volume":"5","author":"A Blais","year":"2014","journal-title":"Biometals"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1093\/ajcn\/54.1.123","article-title":"Changes in circulating leukocytes and mitogen responses during very-low-energy all-protein reducing diets","volume":"54","author":"CJ Field","year":"1991","journal-title":"Am J Clin Nutr"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"418","DOI":"10.1016\/j.jnutbio.2004.02.003","article-title":"Energy restriction restores the impaired immune response in overweight (cafeteria) rats","volume":"15","author":"O Lamas","year":"2004","journal-title":"J Nutr Biochem"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"882","DOI":"10.1189\/jlb.0108028","article-title":"Adipose-immune interactions during obesity and caloric restriction: reciprocal mechanisms regulating immunity and health span","volume":"84","author":"VD Dixit","year":"2008","journal-title":"J Leukoc Biol"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"1107","DOI":"10.1093\/gerona\/glp101","article-title":"Calorie restriction enhances T-cell-mediated immune response in adult overweight men and women","volume":"64","author":"T Ahmed","year":"2009","journal-title":"J Gerontol A Biol Sci Med Sci"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"395672","DOI":"10.1155\/2013\/395672","article-title":"Exercise and caloric restriction alter the immune system of mice submitted to a high-fat diet","volume":"2013","author":"F Wasinski","year":"2013","journal-title":"Mediators Inflamm"},{"key":"ref50","first-page":"38","article-title":"Influence of caloric restriction on aging immune system","volume":"8","author":"MA Pahlavani","year":"2004","journal-title":"J Nutr Health Aging"},{"key":"ref51","first-page":"1","article-title":"CXCR3 expression defines a novel subset of innate CD8+ T cells that enhance immunity against bacterial infection and cancer upon stimulation with IL-15","volume":"29","author":"S Oghumu","year":"2014","journal-title":"FASEB J"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"16225","DOI":"10.1074\/jbc.M113.454538","article-title":"Immune responsive gene 1 (IRG1) promotes endotoxin tolerance by increasing A20 expression in macrophages through reactive oxygen species","volume":"288","author":"Y Li","year":"2013","journal-title":"J Biol Chem"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1038\/nri2586","article-title":"Structure and signalling in the IL-17 receptor family","volume":"9","author":"SL Gaffen","year":"2009","journal-title":"Nat Rev Immunol"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1007\/s00018-004-4366-7","article-title":"Microsomal glutathione S-transferases: selective up-regulation of leukotriene C4 synthase during lipopolysaccharide-induced pyresis","volume":"62","author":"O Schroder","year":"2005","journal-title":"Cell Mol Life Sci"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1016\/j.critrevonc.2013.04.003","article-title":"CS1, a SLAM family receptor involved in immune regulation, is a therapeutic target in multiple myeloma","volume":"88","author":"A Veillette","year":"2013","journal-title":"Crit Rev Oncol Hematol"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1038\/nature09204","article-title":"Network organization of the human autophagy system","volume":"466","author":"C Behrends","year":"2010","journal-title":"Nature"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1186\/1471-2407-14-84","article-title":"Overexpression of miR-9 in mast cells is associated with invasive behaviour and spontaneous metastasis","volume":"14","author":"JM Fenger","year":"2014","journal-title":"BMC Cancer"},{"key":"ref58","first-page":"77","article-title":"Biology of Animal Stress","author":"TH Elsasser","year":"2000"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1038\/nrm1203","article-title":"Trefoil factors: initiators of mucosal healing","volume":"4","author":"D Taupin","year":"2003","journal-title":"Nat Rev Mol Cell Biol"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1093\/toxsci\/49.2.156","article-title":"Concise review of the glucathione S-transferases and their significance to toxicology","volume":"49","author":"DL Eaton","year":"1999","journal-title":"Toxicological sciences"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"35338","DOI":"10.1074\/jbc.M109.037036","article-title":"Role of dimethylarginine dimethylaminohydrolases in the regulation of endothelial nitric oxide production","volume":"284","author":"AJ Pope","year":"2009","journal-title":"J Biol Chem"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1152\/physiolgenomics.00002.2015","article-title":"Insulin secretion and signalling in response to dietary restriction and subsequent re-alimentation in cattle","volume":"47","author":"K Keogh","year":"2015","journal-title":"Physiol Genomics"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"54","DOI":"10.1186\/1471-2199-8-54","article-title":"Transcriptional response of pancreatic beta cells to metabolic stimulation: large scale identification of immediate-early and secondary response genes","volume":"8","author":"DA Glauser","year":"2007","journal-title":"BMC Mol Biol"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"2105","DOI":"10.1126\/science.1101731","article-title":"Nutrient availability regulates SIRT1 through a forkhead-dependent pathway","volume":"306","author":"S Nemoto","year":"2004","journal-title":"Science"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0194445","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,16]],"date-time":"2022-08-16T12:25:06Z","timestamp":1660652706000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0194445"}},"subtitle":[],"editor":[{"given":"Henrik","family":"Oster","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2018,3,19]]},"references-count":64,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2018,3,19]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0194445","relation":{},"ISSN":["1932-6203"],"issn-type":[{"type":"electronic","value":"1932-6203"}],"subject":[],"published":{"date-parts":[[2018,3,19]]}}}