{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T02:02:39Z","timestamp":1791165759027,"version":"4.1.0"},"reference-count":84,"publisher":"Public Library of Science (PLoS)","issue":"9","license":[{"start":{"date-parts":[[2018,9,25]],"date-time":"2018-09-25T00:00:00Z","timestamp":1537833600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100007435","name":"\u00c5ke Wiberg Stiftelse","doi-asserted-by":"publisher","award":["M14-0127"],"award-info":[{"award-number":["M14-0127"]}],"id":[{"id":"10.13039\/100007435","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006285","name":"Magnus Bergvalls Stiftelse","doi-asserted-by":"publisher","award":["2015-01200"],"award-info":[{"award-number":["2015-01200"]}],"id":[{"id":"10.13039\/501100006285","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006285","name":"Magnus Bergvalls Stiftelse","doi-asserted-by":"publisher","award":["2016-01675"],"award-info":[{"award-number":["2016-01675"]}],"id":[{"id":"10.13039\/501100006285","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002805","name":"Carl Tryggers Stiftelse f\u00f6r Vetenskaplig Forskning","doi-asserted-by":"publisher","award":["CST 15:57"],"award-info":[{"award-number":["CST 15:57"]}],"id":[{"id":"10.13039\/501100002805","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006350","name":"Stiftelsen Clas Groschinskys Minnesfond","doi-asserted-by":"publisher","award":["M1603"],"award-info":[{"award-number":["M1603"]}],"id":[{"id":"10.13039\/501100006350","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006350","name":"Stiftelsen Clas Groschinskys Minnesfond","doi-asserted-by":"publisher","award":["M1742"],"award-info":[{"award-number":["M1742"]}],"id":[{"id":"10.13039\/501100006350","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006353","name":"Kjell och M\u00e4rta Beijers Stiftelse","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100006353","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0204522","type":"journal-article","created":{"date-parts":[[2018,9,25]],"date-time":"2018-09-25T17:36:31Z","timestamp":1537896991000},"page":"e0204522","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":17,"title":["Time-resolved proteomics of adenovirus infected cells"],"prefix":"10.1371","volume":"13","author":[{"given":"Alberto","family":"Vald\u00e9s","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hongxing","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ulf","family":"Pettersson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9510-3816","authenticated-orcid":true,"given":"Sara Bergstr\u00f6m","family":"Lind","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2018,9,25]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1038\/374081a0","article-title":"A family of transcriptional adaptor proteins targeted by the E1A oncoprotein","volume":"374","author":"Z Arany","year":"1995","journal-title":"Nature"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"659","DOI":"10.1016\/0092-8674(90)90112-R","article-title":"Adenovirus E1A proteins can dissociate heteromeric complexes involving the E2F transcription factor: a novel mechanism for E1A trans-activation","volume":"62","author":"S Bagchi","year":"1990","journal-title":"Cell"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1146\/annurev.genet.31.1.177","article-title":"Viral transactivating proteins","volume":"31","author":"J Flint","year":"1997","journal-title":"Annu Rev Genet"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"3104","DOI":"10.1101\/gad.926401","article-title":"Degradation of p53 by adenovirus E4orf6 and E1B55K proteins occurs via a novel mechanism involving a Cullin-containing complex","volume":"15","author":"E Querido","year":"2001","journal-title":"Gene Dev"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1038\/357082a0","article-title":"Inhibition of p53 transactivation required for transformation by adenovirus early 1B protein","volume":"357","author":"PR Yew","year":"1992","journal-title":"Nature"},{"key":"ref6","first-page":"237","article-title":"E3 transcription unit of adenovirus","volume":"199","author":"WS Wold","year":"1995","journal-title":"Curr Top Microbiol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1006\/viro.1999.9866","article-title":"Adenovirus E4 34k and E4 11k inhibit double strand break repair and are physically associated with the cellular DNA-dependent protein kinase","volume":"263","author":"J Boyer","year":"1999","journal-title":"Virology"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1016\/j.virol.2007.02.013","article-title":"How adenovirus strives to control cellular gene expression","volume":"363","author":"H Zhao","year":"2007","journal-title":"Virology"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1016\/j.virol.2011.12.006","article-title":"The transcriptome of the adenovirus infected cell","volume":"424","author":"H Zhao","year":"2012","journal-title":"Virology"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/j.virol.2015.01.033","article-title":"Fluctuating expression of microRNAs in adenovirus infected cells","volume":"478","author":"H Zhao","year":"2015","journal-title":"Virology"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1016\/j.virol.2016.02.017","article-title":"Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection","volume":"492","author":"H Zhao","year":"2016","journal-title":"Virology"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1146\/annurev-bioeng-061008-124934","article-title":"Proteomics by Mass Spectrometry: Approaches, Advances, and Applications","volume":"11","author":"JR Yates","year":"2009","journal-title":"Annu Rev Biomed Eng"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"160015","DOI":"10.1038\/sdata.2016.15","article-title":"A large dataset of protein dynamics in the mammalian heart proteome","volume":"3","author":"E Lau","year":"2016","journal-title":"Sci Data"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1016\/j.immuni.2017.02.010","article-title":"Integrative Proteomics and Phosphoproteomics Profiling Reveals Dynamic Signaling Networks and Bioenergetics Pathways Underlying T Cell Activation","volume":"46","author":"H Tan","year":"2017","journal-title":"Immunity"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1074\/mcp.M116.061481","article-title":"Nano\u2013liquid chromatography\u2013orbitrap ms\u2013based quantitative proteomics reveals differences between the mechanisms of action of carnosic acid and carnosol in colon cancer cells","volume":"16","author":"A Vald\u00e9s","year":"2017","journal-title":"Mol Cell Proteomics"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"S92","DOI":"10.1074\/mcp.M116.065987","article-title":"Time-resolved Global and Chromatin Proteomics during Herpes Simplex Virus Type 1 [HSV-1] Infection","volume":"16","author":"K Kulej","year":"2017","journal-title":"Mol Cell Proteomics"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"16027","DOI":"10.1038\/npjsba.2016.27","article-title":"A time-resolved molecular map of the macrophage response to VSV infection","volume":"2","author":"RK Kandasamy","year":"2016","journal-title":"Syst Biol Applications"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1002\/pmic.200700757","article-title":"Proteomics analysis of differential expression of cellular proteins in response to avian H9N2 virus infection in human cells","volume":"8","author":"N Liu","year":"2008","journal-title":"Proteomics"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"S65","DOI":"10.1074\/mcp.O116.065201","article-title":"The Promise of Proteomics in the Study of Oncogenic Viruses","volume":"16","author":"AA McBride","year":"2017","journal-title":"Mol Cell Proteomics"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1016\/j.jpba.2015.04.013","article-title":"Stable isotope labelling methods in mass spectrometry\u2013based quantitative proteomics","volume":"113","author":"O Chahrour","year":"2015","journal-title":"J Pharm Biomed Anal"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1074\/mcp.M200025-MCP200","article-title":"Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics","volume":"1","author":"SE Ong","year":"2002","journal-title":"Mol Cell Proteomics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1074\/mcp.M400219-MCP200","article-title":"Quantitative Phosphoproteomics Applied to the Yeast Pheromone Signaling Pathway","volume":"4","author":"A Gruhler","year":"2005","journal-title":"Mol Cell Proteomics"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1038\/nmeth0309-184","article-title":"A Computational Approach to Correct Arginine\u2013to\u2013Proline Conversion in Quantitative Proteomics","volume":"6","author":"SK Park","year":"2009","journal-title":"Nat Methods"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"3720","DOI":"10.1016\/j.jprot.2012.04.035","article-title":"Effective correction of experimental errors in quantitative proteomics using stable isotope labeling by amino acids in cell culture [SILAC]","volume":"75","author":"SS Park","year":"2012","journal-title":"J Proteomics"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1093\/bioinformatics\/btt703","article-title":"Causal analysis approaches in Ingenuity Pathway Analysis","volume":"30","author":"A Kr\u00e4mer","year":"2014","journal-title":"Bioinformatics"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"2129","DOI":"10.1101\/gr.772403","article-title":"PANTHER: a library of protein families and subfamilies indexed by function","volume":"13","author":"PD Thomas","year":"2003","journal-title":"Genome Res"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"1325","DOI":"10.1128\/AEM.03457-12","article-title":"Mechanisms of Human Adenovirus Inactivation by Sunlight and UVC Light as Examined by Quantitative PCR and Quantitative Proteomics","volume":"79","author":"F Bosshard","year":"2013","journal-title":"Appl Environ Microbiol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1074\/mcp.M900338-MCP200","article-title":"Proteomics analysis of the nucleolus in adenovirus\u2013infected cells","volume":"9","author":"YW Lam","year":"2010","journal-title":"Mol Cell Proteomics"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1016\/j.virol.2017.08.032","article-title":"Temporal characterization of the non\u2013structural Adenovirus type 2 proteome and phosphoproteome using high\u2013resolving mass spectrometry","volume":"511","author":"M K\u00e4llsten","year":"2017","journal-title":"Virology"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"1207","DOI":"10.1038\/nmeth.2227","article-title":"De novo derivation of proteomes from transcriptomes for transcript and protein identification","volume":"9","author":"VC Evans","year":"2012","journal-title":"Nat Methods"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"872","DOI":"10.1021\/acs.jproteome.6b00834","article-title":"Posttranscriptional Regulation in Adenovirus Infected Cells","volume":"16","author":"H Zhao","year":"2017","journal-title":"J Proteome Res"},{"key":"ref32","first-page":"1512","article-title":"Global signatures of protein and mRNA expression levels","volume":"5","author":"RS Abreu","year":"2009","journal-title":"Mol Biosyst"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1038\/nrg3185","article-title":"Insights into the regulation of protein abundance from proteomic and transcriptomic analyses","volume":"13","author":"C Vogel","year":"2012","journal-title":"Nat Rev Gen"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1016\/j.cell.2016.03.014","article-title":"On the Dependency of Cellular Protein Levels on mRNA Abundance","volume":"165","author":"Y Liu","year":"2016","journal-title":"Cell"},{"key":"ref35","first-page":"1","article-title":"De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole\/time\u2013of\u2013flight instruments","volume":"146","author":"A Shevchenko","year":"2000","journal-title":"Methods Mol Biol"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1038\/nbt.1511","article-title":"MaxQuant enables high peptide identification rates, individualized p.p.b.\u2013range mass accuracies and proteome\u2013wide protein quantification","volume":"26","author":"J Cox","year":"2008","journal-title":"Nat Biotechnol"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"1794","DOI":"10.1021\/pr101065j","article-title":"Andromeda: a peptide search engine integrated into the MaxQuant environment","volume":"10","author":"J Cox","year":"2011","journal-title":"J Proteome Res"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1038\/nbt.2839","article-title":"ProteomeXchange provides globally coordinated proteomics data submission and dissemination","volume":"32","author":"JA Vizca\u00edno","year":"2014","journal-title":"Nat Biotechnol"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1016\/j.virol.2005.08.023","article-title":"Modulation of host cell gene expression during onset of the late phase of an adenovirus infection is focused on growth inhibition and cell architecture","volume":"343","author":"F Granberg","year":"2005","journal-title":"Virology"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"11006","DOI":"10.1128\/JVI.77.20.11006-11015.2003","article-title":"Strategic attack on host cell gene expression during adenovirus infection","volume":"77","author":"H Zhao","year":"2003","journal-title":"J Virol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1016\/0092-8674(94)90202-X","article-title":"Adenovirus E1B 19 kDa and Bcl\u20132 proteins interact with a common set of cellular proteins","volume":"79","author":"JM Boyd","year":"1994","journal-title":"Cell"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1016\/j.biocel.2008.07.025","article-title":"Functions and Mechanisms of Action of CCN Matricellular Proteins","volume":"41","author":"CC Chen","year":"2009","journal-title":"Int J Biochem Cell Biol"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1002\/cbf.2853","article-title":"The matrix protein CCN1\/CYR61 is required for \u03b1V\u03b25\u2013mediated cancer cell migration","volume":"30","author":"J Jandova","year":"2012","journal-title":"Cell Biochem Funct"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"3090","DOI":"10.1074\/jbc.273.5.3090","article-title":"Adhesion of human umbilical vein endothelial cells to the immediate\u2013early gene product Cyr61 is mediated through integrin alphavbeta3","volume":"273","author":"ML Kireeva","year":"1998","journal-title":"J Biol Chem"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/ncb2070","article-title":"The matricellular protein CCN1 induces fibroblast senescence and restricts fibrosis in cutaneous wound healing","volume":"12","author":"JI Jun","year":"2010","journal-title":"Nat Cell Biol"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1016\/0092-8674(93)90231-E","article-title":"Integrins alpha v beta 3 and alpha v beta 5 promote adenovirus internalization but not virus attachment","volume":"73","author":"TJ Wickham","year":"1993","journal-title":"Cell"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1128\/MMBR.63.3.725-734.1999","article-title":"Role of alpha(v) integrins in adenovirus cell entry and gene delivery","volume":"63","author":"GR Nemerow","year":"1999","journal-title":"Microbiol Mol Biol Rev"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1186\/1743-422X-7-148","article-title":"Integrin \u03b1v\u03b25 is a primary receptor for adenovirus in CAR-negative cells","volume":"7","author":"C Lyle","year":"2010","journal-title":"Virol J"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"2994","DOI":"10.1128\/MCB.6.8.2994","article-title":"The E1A 13S product of adenovirus 5 activates transcription of the cellular human HSP70 gene","volume":"6","author":"BJ Wu","year":"1986","journal-title":"Mol Cell Biol"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.cytogfr.2008.01.002","article-title":"Regulation and function of connective tissue growth factor\/CCN2 in tissue repair, scarring and fibrosis","volume":"19","author":"X Shi-Wen","year":"2008","journal-title":"Cytokine Growth F R"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1016\/j.bbrc.2014.06.021","article-title":"Mannose metabolism: more than meets the eye","volume":"453","author":"V Sharma","year":"2014","journal-title":"Biochem Biophys Res Commun"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"3559","DOI":"10.4161\/cc.21572","article-title":"Toll\u2013like receptors, signaling adapters and regulation of the pro\u2013inflammatory response by PI3K","volume":"11","author":"TD Troutman","year":"2012","journal-title":"Cell Cycle"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"3170","DOI":"10.1128\/JVI.02192-06","article-title":"Innate immune response to adenoviral vectors is mediated by both Toll\u2013like receptor\u2013dependent and\u2013independent pathways","volume":"81","author":"J Zhu","year":"2007","journal-title":"J Virol"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1038\/nature08247","article-title":"Direct Activation of Protein Kinases by Unanchored Polyubiquitin Chains","volume":"461","author":"Z Xia","year":"2009","journal-title":"Nature"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"461","DOI":"10.3389\/fimmu.2014.00461","article-title":"Toll\u2013like receptor signaling pathways","volume":"5","author":"T Kawasaki","year":"2014","journal-title":"Front Immunol"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1186\/1478-811X-11-97","article-title":"Targeting the PDGF signaling pathway in tumor treatment","volume":"11","author":"CH Heldin","year":"2013","journal-title":"Cell Commun Signal"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"6387","DOI":"10.1128\/MCB.21.19.6387-6394.2001","article-title":"Receptor heterodimerization: essential mechanism for platelet\u2013derived growth factor\u2013induced epidermal growth factor receptor transactivation","volume":"11","author":"Y Saito","year":"2001","journal-title":"Mol Cell Biol"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"741","DOI":"10.1083\/jcb.132.4.741","article-title":"Stimulation of \u03b21 integrins on fibroblasts induces PDGF independent tyrosine phosphorylation of PDGF \u03b2\u2013receptors","volume":"11","author":"C Sundberg","year":"1996","journal-title":"J Cell Biol"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"8806","DOI":"10.1128\/JVI.72.11.8806-8812.1998","article-title":"Adenovirus Endocytosis Requires Actin Cytoskeleton Reorganization Mediated by Rho Family GTPases","volume":"72","author":"E Li","year":"1998","journal-title":"J Virol"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1242\/jcs.108.1.225","article-title":"Activation of the small GTP\u2013binding proteins Rho and Rac by growth factor receptors","volume":"108","author":"CD Nobes","year":"1995","journal-title":"J Cell Science"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1038\/367040a0","article-title":"A brain serine\/threonine protein kinase activated by Cdc42 and Rac1","volume":"367","author":"E Manser","year":"1994","journal-title":"Nature"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1016\/j.ceb.2010.10.007","article-title":"New mechanisms and functions of actin nucleation","volume":"23","author":"EN Firat-Karalar","year":"2011","journal-title":"Curr Opin Cell Biol"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1016\/j.gde.2009.01.002","article-title":"The molecular determinants of de novo nucleotide biosynthesis in cancer cells","volume":"19","author":"X Tong","year":"2009","journal-title":"Curr Opin Genet Dev"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"653","DOI":"10.1042\/bj20021785","article-title":"L\u2013serine in disease and development","volume":"371","author":"TJ de Koning","year":"2003","journal-title":"Biochem J"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"2466","DOI":"10.1093\/nar\/gkv047","article-title":"Regulation of mammalian nucleotide metabolism and biosynthesis","volume":"43","author":"AN Lane","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"ref66","doi-asserted-by":"crossref","first-page":"41191","DOI":"10.1038\/srep41191","article-title":"SWATH-based proteomics identified carbonic anhydrase 2 as a potential diagnosis biomarker for nasopharyngeal carcinoma","volume":"7","author":"Y Luo","year":"2017","journal-title":"Sci Rep"},{"key":"ref67","doi-asserted-by":"crossref","first-page":"538","DOI":"10.1016\/j.bbrc.2014.06.008","article-title":"Functional proteomics revealed IL-1\u03b2 amplifies TNF downstream protein signals in human synoviocytes in a TNF-independent manner","volume":"450","author":"S Shen","year":"2014","journal-title":"Biochem Biophys Res Commun"},{"key":"ref68","doi-asserted-by":"crossref","first-page":"10775","DOI":"10.1038\/srep10775","article-title":"Relationship between differentially expressed mRNA and mRNA-protein correlations in a xenograft model system","volume":"5","author":"A Koussounadis","year":"2015","journal-title":"Sci Rep"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1186\/gb-2003-4-9-117","article-title":"Comparing protein abundance and mRNA expression levels on a genomic scale","volume":"4","author":"D Greenbaum","year":"2003","journal-title":"Genome Biol"},{"key":"ref70","doi-asserted-by":"crossref","first-page":"7936","DOI":"10.1128\/JVI.77.14.7936-7944.2003","article-title":"Mutual interference of adenovirus infection and myc expression","volume":"77","author":"K L\u00f6hr","year":"2003","journal-title":"J Virol"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"6103","DOI":"10.1073\/pnas.0802095105","article-title":"Adenovirus E1A targets p400 to induce the cellular oncoprotein Myc","volume":"105","author":"KA Tworkowski","year":"2008","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"3071","DOI":"10.1073\/pnas.1200494109","article-title":"Human kinome profiling identifies a requirement for AMP\u2013activated protein kinase during human cytomegalovirus infection","volume":"109","author":"LJ Terry","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"694","DOI":"10.1016\/j.cmet.2014.03.009","article-title":"Adenovirus E4ORF1\u2013induced MYC activation promotes host cell anabolic glucose metabolism and virus replication","volume":"19","author":"M Thai","year":"2014","journal-title":"Cell Metab"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"2603","DOI":"10.1002\/j.1460-2075.1992.tb05325.x","article-title":"Adenovirus E1a prevents the retinoblastoma gene product from repressing the activity of a cellular transcription factor","volume":"11","author":"M Zamanian","year":"1992","journal-title":"EMBO J"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1038\/sj.cdd.4401833","article-title":"Viruses, endoplasmic reticulum stress, and interferon responses","volume":"13","author":"B He","year":"2006","journal-title":"Cell Death Differ"},{"key":"ref76","first-page":"1","article-title":"Role of Coatomer Protein I in Virus Replication","volume":"1","author":"JA Thompson","year":"2012","journal-title":"J Virol Antivir Res"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1101\/gad.10.4.461","article-title":"The E1B 19K protein blocks apoptosis by interacting with and inhibiting the p53\u2013inducible and death\u2013promoting Bax protein","volume":"10","author":"J Han","year":"1996","journal-title":"Genes Dev"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1016\/j.virol.2006.08.041","article-title":"Adenoviral infection induces a multi-faceted innate cellular immune response that is mediated by the toll-like receptor pathway in A549 cells","volume":"358","author":"ZC Hartman","year":"2007","journal-title":"Virology"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"24592","DOI":"10.1074\/jbc.M313620200","article-title":"Endotoxin inhibits intestinal epithelial restitution through activation of Rho-GTPase and increased focal adhesions","volume":"279","author":"S Cetin","year":"2004","journal-title":"J Biol Chem"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"7393","DOI":"10.4049\/jimmunol.174.11.7393","article-title":"Cross talk between MyD88 and focal adhesion kinase pathways","volume":"174","author":"MB Zeisel","year":"2005","journal-title":"J Immunol"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1002\/hep.23733","article-title":"Transcriptome sequencing, microarray, and proteomic analyses reveal cellular and metabolic impact of hepatitis C virus infection in vitro","volume":"52","author":"SD Woodhouse","year":"2010","journal-title":"Hepatology"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"224","DOI":"10.1016\/j.tox.2010.02.005","article-title":"Functional inactivation of triosephosphate isomerase through phosphorylation during etoposide-induced apoptosis in HeLa cells: potential role of Cdk2","volume":"278","author":"WH Lee","year":"2010","journal-title":"Toxicology"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"681","DOI":"10.1038\/ncb838","article-title":"Filamin is essential in actin cytoskeletal assembly mediated by p21-activated kinase 1","volume":"4","author":"RK Vadlamudi","year":"2002","journal-title":"Nat Cell Biol"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"3289","DOI":"10.1007\/s00018-009-0086-3","article-title":"Heat shock protein 27 phosphorylation: kinases, phosphatases, functions and pathology","volume":"66","author":"S Kostenko","year":"2009","journal-title":"Cell Mol Life Sci"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pone.0204522","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,9,2]],"date-time":"2022-09-02T18:41:08Z","timestamp":1662144068000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0204522"}},"subtitle":[],"editor":[{"given":"Michael","family":"Nevels","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2018,9,25]]},"references-count":84,"journal-issue":{"issue":"9","published-online":{"date-parts":[[2018,9,25]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0204522","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,9,25]]}}}