{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,7]],"date-time":"2026-01-07T23:46:12Z","timestamp":1767829572988,"version":"3.49.0"},"reference-count":21,"publisher":"Public Library of Science (PLoS)","issue":"2","license":[{"start":{"date-parts":[[2020,2,21]],"date-time":"2020-02-21T00:00:00Z","timestamp":1582243200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"DOI":"10.1371\/journal.pone.0228116","type":"journal-article","created":{"date-parts":[[2020,2,21]],"date-time":"2020-02-21T13:34:18Z","timestamp":1582292058000},"page":"e0228116","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":10,"title":["Epidemiological and comparative genomic analysis of Bacillus anthracis isolated from northern Vietnam"],"prefix":"10.1371","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3075-1820","authenticated-orcid":true,"given":"Thi Thu Ha","family":"Hoang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Duc Anh","family":"Dang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thanh Hai","family":"Pham","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Minh Hoa","family":"Luong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nhu Duong","family":"Tran","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tran Hien","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thuy Tram","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tran Tuan","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Satoshi","family":"Inoue","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shigeru","family":"Morikawa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Akiko","family":"Okutani","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2020,2,21]]},"reference":[{"issue":"5","key":"pone.0228116.ref001","first-page":"295","article-title":"The ecology of anthrax spores: tough but not invincible","volume":"36","author":"DC Dragon","year":"1995","journal-title":"Can Vet J"},{"issue":"6","key":"pone.0228116.ref002","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1016\/j.mam.2009.08.003","article-title":"The ecology of Bacillus anthracis","volume":"30","author":"M Hugh-Jones","year":"2009","journal-title":"Mol Aspects Med"},{"key":"pone.0228116.ref003","unstructured":"World Health Organization. Guidelines for the surveillance and control of anthrax in humans and animals. 1998. http:\/\/www.who.int\/csr\/resources\/publications\/anthrax\/WHO_EMC_ZDI_98_6\/en\/"},{"issue":"2","key":"pone.0228116.ref004","doi-asserted-by":"crossref","first-page":"322","DOI":"10.3201\/eid2002.120921","article-title":"Injectional anthrax in heroin users, europe, 2000\u20132012","volume":"20","author":"M Hanczaruk","year":"2014","journal-title":"Emerg Infect Dis"},{"issue":"2","key":"pone.0228116.ref005","first-page":"14","article-title":"Epidemiological characteristics of human anthrax in the northern region of Vietnam, 2006\u20132011","volume":"22","author":"TN Duong","year":"2012","journal-title":"Viet J Prevent Med"},{"issue":"6","key":"pone.0228116.ref006","doi-asserted-by":"crossref","first-page":"1218","DOI":"10.1016\/j.meegid.2011.05.013","article-title":"Bacillus anthracis: molecular taxonomy, population genetics, phylogeny and patho-evolution","volume":"11","author":"P Pilo","year":"2011","journal-title":"Infect Genet Evol"},{"issue":"5","key":"pone.0228116.ref007","article-title":"A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens","volume":"7","author":"JW Sahl","year":"2016","journal-title":"mBio"},{"issue":"5","key":"pone.0228116.ref008","doi-asserted-by":"crossref","first-page":"e461","DOI":"10.1371\/journal.pone.0000461","article-title":"Global genetic population structure of Bacillus anthracis","volume":"2","author":"MN Van Ert","year":"2007","journal-title":"PLoS One"},{"issue":"1","key":"pone.0228116.ref009","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1128\/JCM.01233-06","article-title":"Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain","volume":"45","author":"MN Van Ert","year":"2007","journal-title":"J Clin Microbiol"},{"issue":"37","key":"pone.0228116.ref010","doi-asserted-by":"crossref","first-page":"13536","DOI":"10.1073\/pnas.0403844101","article-title":"Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing","volume":"101","author":"T Pearson","year":"2004","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"5","key":"pone.0228116.ref011","doi-asserted-by":"crossref","first-page":"1010","DOI":"10.1016\/j.meegid.2009.05.014","article-title":"Phylogenetic understanding of clonal populations in an era of whole genome sequencing","volume":"9","author":"T Pearson","year":"2009","journal-title":"Infect Genet Evol"},{"issue":"7","key":"pone.0228116.ref012","first-page":"669","article-title":"Application of High-Throughput Sequencing: Discovery of Informative SNPs to Subtype Bacillus anthracis","volume":"5","author":"G Girault","year":"2014","journal-title":"Scientific Research"},{"key":"pone.0228116.ref013","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.vetmic.2016.10.014","article-title":"Whole genome SNP analysis of bovine Bacillus anthracis strains from Switzerland reflects strict regional separation of Simmental and Swiss Brown breeds in the past","volume":"196","author":"S Derzelle","year":"2016","journal-title":"Vet Microbiol"},{"key":"pone.0228116.ref014","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1016\/j.meegid.2015.03.030","article-title":"Molecular diversity of Bacillus anthracis in the Netherlands: investigating the relationship to the worldwide population using whole-genome SNP discovery","volume":"32","author":"S Derzelle","year":"2015","journal-title":"Infect Genet Evol"},{"key":"pone.0228116.ref015","doi-asserted-by":"crossref","first-page":"128","DOI":"10.1016\/j.meegid.2019.03.022","article-title":"Comparative genomics and phylogenetic analysis of Bacillus anthracis strains isolated from domestic animals in Japan","volume":"71","author":"A Okutani","year":"2019","journal-title":"Infect Genet Evol"},{"key":"pone.0228116.ref016","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.meegid.2016.10.019","article-title":"Comparative genomics of Bacillus anthracis from the wool industry highlights polymorphisms of lineage A.Br.Vollum","volume":"46","author":"S Derzelle","year":"2016","journal-title":"Infect Genet Evol"},{"issue":"2","key":"pone.0228116.ref017","doi-asserted-by":"crossref","first-page":"e0146216","DOI":"10.1371\/journal.pone.0146216","article-title":"Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade","volume":"11","author":"G Vergnaud","year":"2016","journal-title":"PLoS One"},{"issue":"1","key":"pone.0228116.ref018","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1186\/1471-2180-13-167","article-title":"Ground Anthrax Bacillus Refined Isolation (GABRI) method for analyzing environmental samples with low levels of Bacillus anthracis contamination","volume":"13","author":"A Fasanella","year":"2013","journal-title":"BMC Microbiol"},{"issue":"1","key":"pone.0228116.ref019","article-title":"Purification of nucleic acids by extraction with phenol:chloroform","volume":"2006","author":"J Sambrook","year":"2006","journal-title":"Cold Spring Harbor Protocols"},{"issue":"11","key":"pone.0228116.ref020","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1186\/s13059-014-0524-x","article-title":"The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes","volume":"15","author":"TJ Treangen","year":"2014","journal-title":"Genome Biol"},{"issue":"D1","key":"pone.0228116.ref021","doi-asserted-by":"crossref","first-page":"D682","DOI":"10.1093\/nar\/gkv1004","article-title":"BacWGSTdb, a database for genotyping and source tracking bacterial pathogens","volume":"44","author":"Z Ruan","year":"2016","journal-title":"Nucleic Acids Res"}],"container-title":["PLOS ONE"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0228116","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,2,21]],"date-time":"2020-02-21T13:34:40Z","timestamp":1582292080000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pone.0228116"}},"subtitle":[],"editor":[{"given":"Zhi","family":"Ruan","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2020,2,21]]},"references-count":21,"journal-issue":{"issue":"2","published-online":{"date-parts":[[2020,2,21]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pone.0228116","relation":{},"ISSN":["1932-6203"],"issn-type":[{"value":"1932-6203","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,2,21]]}}}