{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,1]],"date-time":"2026-08-01T06:29:18Z","timestamp":1785565758337,"version":"3.56.0"},"reference-count":136,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2024,8,19]],"date-time":"2024-08-19T00:00:00Z","timestamp":1724025600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["INV-008459"],"award-info":[{"award-number":["INV-008459"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["Project PEN0464 and Accession 1015787"],"award-info":[{"award-number":["Project PEN0464 and Accession 1015787"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000038","name":"U.S. Food and Drug Administration","doi-asserted-by":"publisher","award":["LFFM program"],"award-info":[{"award-number":["LFFM program"]}],"id":[{"id":"10.13039\/100000038","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000038","name":"U.S. Food and Drug Administration","doi-asserted-by":"publisher","award":["LFFM program"],"award-info":[{"award-number":["LFFM program"]}],"id":[{"id":"10.13039\/100000038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS ONE"],"abstract":"<jats:p>Campylobacteriosis outbreaks have previously been linked to dairy foods. While the genetic diversity of <jats:italic>Campylobacter<\/jats:italic> is well understood in high-income countries, it is largely unknown in low-income countries, such as Ethiopia. This study therefore aimed to conduct the first genomic characterization of <jats:italic>Campylobacter<\/jats:italic> isolates from the Ethiopian dairy supply chain to aid in future epidemiological studies. Fourteen <jats:italic>C<\/jats:italic>. <jats:italic>jejuni<\/jats:italic> and four <jats:italic>C<\/jats:italic>. <jats:italic>coli<\/jats:italic> isolates were whole genome sequenced using an Illumina platform. Sequences were analyzed using the bioinformatics tools in the GalaxyTrakr platform to identify MLST types, and single nucleotide polymorphisms, and infer phylogenetic relationships among the studied isolates. Assembled genomes were further screened to detect antimicrobial resistance and virulence gene sequences. Among 14 <jats:italic>C<\/jats:italic>. <jats:italic>jejuni<\/jats:italic>, ST 2084 and ST 51, which belong to the clonal complexes ST-353 and ST-443, respectively, were identified. Among the 4 sequenced <jats:italic>C<\/jats:italic>. <jats:italic>coli<\/jats:italic> isolates, two isolates belonged to ST 1628 and two to ST 830 from the clonal complex ST-828. The isolates of <jats:italic>C<\/jats:italic>. <jats:italic>jejuni<\/jats:italic> ST 2084 and ST 51 carried \u03b2-lactam resistance gene <jats:italic>blaOXA-605<\/jats:italic>, a fluoroquinolone resistance-associated mutation T86I in the <jats:italic>gryA<\/jats:italic> gene, and a macrolide resistance-associated mutation A103V in <jats:italic>50S L22<\/jats:italic>. Only ST 2084 isolates carried the tetracycline resistance gene <jats:italic>tetO<\/jats:italic>. Conversely, all four <jats:italic>C<\/jats:italic>. <jats:italic>coli<\/jats:italic> ST 830 and ST 1628 isolates carried <jats:italic>tetO<\/jats:italic>, but only ST 1628 isolates also carried <jats:italic>blaOXA-605<\/jats:italic>. Lastly, <jats:italic>C<\/jats:italic>. <jats:italic>jejuni<\/jats:italic> ST 2084 isolates carried a total of 89 virulence genes, and ST 51 isolates carried up to 88 virulence genes. Among <jats:italic>C<\/jats:italic>. <jats:italic>coli<\/jats:italic>, ST 830 isolates carried 71 genes involved in virulence, whereas two ST 1628 isolates carried up to 82 genes involved in virulence. Isolates from all identified STs have previously been isolated from human clinical cases, demonstrating a potential food safety concern. This finding warrants further monitoring of <jats:italic>Campylobacter<\/jats:italic> in dairy foods in Ethiopia to better understand and manage the risks associated with <jats:italic>Campylobacter<\/jats:italic> contamination and transmission.<\/jats:p>","DOI":"10.1371\/journal.pone.0305581","type":"journal-article","created":{"date-parts":[[2024,8,19]],"date-time":"2024-08-19T17:40:25Z","timestamp":1724089225000},"page":"e0305581","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":8,"title":["Genomic diversity of Campylobacter jejuni and Campylobacter coli isolated from the Ethiopian dairy supply chain"],"prefix":"10.1371","volume":"19","author":[{"given":"Abera","family":"Admasie","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoyuan","family":"Wei","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beth","family":"Johnson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Logan","family":"Burns","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Preeti","family":"Pawar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashley","family":"Aurand-Cravens","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olena","family":"Voloshchuk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Edward G.","family":"Dudley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4103-5029","authenticated-orcid":true,"given":"Tesfaye","family":"Sisay Tessema","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ashagrie","family":"Zewdu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9465-4552","authenticated-orcid":true,"given":"Jasna","family":"Kovac","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2024,8,19]]},"reference":[{"key":"pone.0305581.ref001","first-page":"701","volume-title":"The health burden of Campylobacter infection and the impact of antimicrobial resistance: playing chicken","author":"GM Ruiz-Palacios","year":"2007"},{"key":"pone.0305581.ref002","first-page":"87","volume-title":"Campylobacteriosis. 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