{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T17:49:20Z","timestamp":1782409760530,"version":"3.54.5"},"reference-count":27,"publisher":"Public Library of Science (PLoS)","issue":"6","license":[{"start":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T00:00:00Z","timestamp":1782345600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS One"],"abstract":"<jats:sec id=\"sec001\">\n                    <jats:title>Objective<\/jats:title>\n                    <jats:p>Whole genome sequencing (WGS) is increasingly used to support infection prevention and control. However, its application for routine regional surveillance of vancomycin-resistant Enterococcus faecium (VREfm) across multiple healthcare facilities is still evolving.<\/jats:p>\n                    <jats:p>This study describes the implementation of routine centralised\u00a0multicenter\u00a0WGS surveillance of VREfm and explores its utility for detecting clusters and investigating transmission within and between healthcare institutions in a regional healthcare network.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec id=\"sec002\">\n                    <jats:title>Methods<\/jats:title>\n                    <jats:p>VREfm isolates identified from patient samples (clinical and screening) in five different hospitals in the Netherlands during a one-year period were whole genome sequenced and typed using core genome multilocus sequence typing (cgMLST). Sequence data were correlated with admission data of the year prior to the first positive VREfm culture of the respective patients. By combining epidemiological and sequence data within and between hospital transmission events were identified.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec id=\"sec003\">\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>57 VREfm isolates were detected during the study period. 38\/57 (66.7%) isolates clustered with at least one other isolate. Based on our definitions, intrahospital transmission could be demonstrated in 37 of 38 cases and interhospital transmission in 3 of 38 cases. Using this approach, a multicenter outbreak and two local outbreaks were detected.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec id=\"sec004\">\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>Routine whole genome sequencing of VREfm is a powerful tool for detecting, tracing and delineating outbreaks. When integrated into a centralised surveillance system spanning collaborative healthcare networks, it becomes an essential tool for\u00a0unraveling\u00a0the complex transmission dynamics of VRE within and between hospitals, ultimately strengthening infection control strategies.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1371\/journal.pone.0334734","type":"journal-article","created":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T17:31:52Z","timestamp":1782408712000},"page":"e0334734","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":0,"title":["Regional VRE surveillance using routine centralised, multicentre whole genome sequencing"],"prefix":"10.1371","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0009-0006-8148-6373","authenticated-orcid":true,"given":"Djamayl L. H. H.","family":"Engelen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3661-9035","authenticated-orcid":true,"given":"Jean-Luc","family":"Murk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1101-4494","authenticated-orcid":true,"given":"Veronica A. T. C.","family":"Weterings","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Heike","family":"Schmitt","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bram M. W.","family":"Diederen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreas L. 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Point prevalence survey of healthcare-associated infections and antimicrobial use in European acute care hospitals. Stockholm: European Centre for Disease Prevention and Control. 2024. https:\/\/www.ecdc.europa.eu\/en\/publications-data\/PPS-HAI-AMR-acute-care-europe-2022-2023"},{"issue":"9","key":"pone.0334734.ref002","doi-asserted-by":"crossref","first-page":"690","DOI":"10.1086\/502271","article-title":"Outcomes associated with vancomycin-resistant enterococci: a meta-analysis","volume":"24","author":"CD Salgado","year":"2003","journal-title":"Infect Control Hosp Epidemiol"},{"issue":"1","key":"pone.0334734.ref003","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1017\/ice.2015.228","article-title":"VRE and VSE Bacteremia Outcomes in the Era of Effective VRE Therapy: A Systematic Review and Meta-analysis","volume":"37","author":"C Prematunge","year":"2016","journal-title":"Infect Control Hosp Epidemiol"},{"issue":"2","key":"pone.0334734.ref004","doi-asserted-by":"crossref","first-page":"105","DOI":"10.3390\/antibiotics10020105","article-title":"Does Vancomycin Resistance Increase Mortality? Clinical Outcomes and Predictive Factors for Mortality in Patients with Enterococcus faecium Infections","volume":"10","author":"J Hemapanpairoa","year":"2021","journal-title":"Antibiotics (Basel)"},{"key":"pone.0334734.ref005","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1016\/j.jhin.2023.09.008","article-title":"Epidemiology and outcomes of vancomycin-resistant enterococcus infections: a systematic review and meta-analysis","volume":"141","author":"VM Eichel","year":"2023","journal-title":"J Hosp Infect"},{"issue":"1","key":"pone.0334734.ref006","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1007\/BF01967094","article-title":"Isolation of vancomycin-resistant enterococci in haematologic patients","volume":"10","author":"HF Guiot","year":"1991","journal-title":"Eur J Clin Microbiol Infect Dis"},{"issue":"8","key":"pone.0334734.ref007","doi-asserted-by":"crossref","first-page":"520","DOI":"10.1086\/501797","article-title":"Prevalence and determinants of fecal colonization with vancomycin-resistant Enterococcus in hospitalized patients in The Netherlands","volume":"21","author":"N van den Braak","year":"2000","journal-title":"Infect Control Hosp Epidemiol"},{"key":"pone.0334734.ref008","volume-title":"NethMap 2023: Consumption of antimicrobial agents and antimicrobial resistance among medically important bacteria in the Netherlands","author":"S De Geef","year":"2023"},{"key":"pone.0334734.ref009","unstructured":"Antimicrobial resistance surveillance in Europe 2023 - 2021 data. Stockholm: European Centre for Disease Prevention and Control and World Health Organization. 2023. https:\/\/www.ecdc.europa.eu\/en\/publications-data\/antimicrobial-resistance-surveillance-europe-2023-2021-data"},{"key":"pone.0334734.ref010","unstructured":"De Geef S MJ. NethMap 2018 Consumption of antimicrobial agents and antimicrobial resistance among medically important bacteria in the Netherlands in 2017. Bilthoven: National Institute for Public Health and the Environment; 2018."},{"key":"pone.0334734.ref011","unstructured":"SRI (Samenwerkingsverband Richtlijnen Infectiepreventie). Richtlijn Bijzonder Resistente Micro-organismen (BRMO). 2024. https:\/\/richtlijnendatabase.nl\/richtlijn\/bijzonder_resistente_micro-organismen_brmo\/startpagina_-_bijzonder_resistente_micro-organismen_brmo.html"},{"issue":"3","key":"pone.0334734.ref012","doi-asserted-by":"crossref","DOI":"10.1093\/cid\/ciac726","article-title":"Clinical Implementation of Routine Whole-genome Sequencing for Hospital Infection Control of Multi-drug Resistant Pathogens","volume":"76","author":"BM Forde","year":"2023","journal-title":"Clin Infect Dis"},{"issue":"4","key":"pone.0334734.ref013","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1128\/CMR.00016-17","article-title":"Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis","volume":"30","author":"S Quainoo","year":"2017","journal-title":"Clin Microbiol Rev"},{"key":"pone.0334734.ref014","unstructured":"European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. 2024. https:\/\/www.eucast.org\/clinical_breakpoints"},{"key":"pone.0334734.ref015","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1016\/j.jhin.2021.02.007","article-title":"Successful containment of two vancomycin-resistant Enterococcus faecium (VRE) outbreaks in a Dutch teaching hospital using environmental sampling and whole-genome sequencing","volume":"111","author":"KB Gast","year":"2021","journal-title":"J Hosp Infect"},{"issue":"12","key":"pone.0334734.ref016","doi-asserted-by":"crossref","first-page":"3788","DOI":"10.1128\/JCM.01946-15","article-title":"Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium","volume":"53","author":"M de Been","year":"2015","journal-title":"J Clin Microbiol"},{"issue":"9","key":"pone.0334734.ref017","doi-asserted-by":"crossref","first-page":"1395","DOI":"10.1101\/gr.232397.117","article-title":"GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens","volume":"28","author":"Z Zhou","year":"2018","journal-title":"Genome Res"},{"key":"pone.0334734.ref018","article-title":"SPREAD: Spatiotemporal Pathogen Relationships and Epidemiological Analysis Dashboard","volume":"60","author":"A De Ruvo","year":"2024","journal-title":"Vet Ital"},{"issue":"1","key":"pone.0334734.ref019","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1038\/s41564-020-00806-7","article-title":"Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance","volume":"6","author":"T Gouliouris","year":"2021","journal-title":"Nat Microbiol"},{"key":"pone.0334734.ref020","first-page":"100446","article-title":"Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis","volume":"23","author":"NL Sherry","year":"2022","journal-title":"Lancet Reg Health West Pac"},{"issue":"1","key":"pone.0334734.ref021","doi-asserted-by":"crossref","DOI":"10.1017\/ash.2021.241","article-title":"Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: A systematic review and summary","volume":"2","author":"AJ Sundermann","year":"2022","journal-title":"Antimicrob Steward Healthc Epidemiol"},{"issue":"417","key":"pone.0334734.ref022","doi-asserted-by":"crossref","DOI":"10.1126\/scitranslmed.aan0093","article-title":"Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak","volume":"9","author":"ES Snitkin","year":"2017","journal-title":"Sci Transl Med"},{"issue":"6","key":"pone.0334734.ref023","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1007\/s11908-018-0620-2","article-title":"The Role of Environmental Contamination in the Transmission of Nosocomial Pathogens and Healthcare-Associated Infections","volume":"20","author":"G Suleyman","year":"2018","journal-title":"Curr Infect Dis Rep"},{"issue":"4","key":"pone.0334734.ref024","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.05107-22","article-title":"New Multilocus Sequence Typing Scheme for Enterococcus faecium Based on Whole Genome Sequencing Data","volume":"11","author":"M Bezdicek","year":"2023","journal-title":"Microbiol Spectr"},{"key":"pone.0334734.ref025","article-title":"Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak analyses across different hospitals and hospitals networks in Berlin, Germany","volume":"9","author":"F Maechler","year":"2023","journal-title":"Microb Genom"},{"key":"pone.0334734.ref026","article-title":"Genomic sequencing surveillance of patients colonized with vancomycin-resistant Enterococcus (VRE) improves detection of hospital-associated transmission","author":"A 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