{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T18:17:57Z","timestamp":1788200277087,"version":"build-2803163510"},"reference-count":84,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T00:00:00Z","timestamp":1788134400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.plosone.org"],"crossmark-restriction":false},"short-container-title":["PLoS One"],"abstract":"<jats:p>\n                    P\u00e1ramo, a tropical high-altitude ecosystem, is threatened by climate change and land-use change. This ecosystem hosts unique biodiversity like the endangered bromeliad\n                    <jats:italic>Puya goudotiana<\/jats:italic>\n                    . While root-associated microbiomes are essential for plant survival and stress tolerance, the microbial communities associated with this species remain uncharacterized. Oxford Nanopore amplicon sequencing was used on root endosphere and bulk soil samples of\n                    <jats:italic>P. goudotiana<\/jats:italic>\n                    , targeting the 16S rRNA gene to evaluate bacterial communities, and the 18S rRNA gene as an exploratory marker for fungal communities. We assessed the taxonomic composition, diversity, functional profiles and co-occurrence networks. Microbial communities were highly differentiated by sample type, with roots exhibiting lower alpha diversity than bulk soil. The root microbiome showed higher prevalence of acidophilic taxa such as\n                    <jats:italic>Granulicella<\/jats:italic>\n                    and\n                    <jats:italic>Acidipila<\/jats:italic>\n                    and symbionts like\n                    <jats:italic>Bradyrhizobium<\/jats:italic>\n                    , whereas bulk soils were dominated by typical p\u00e1ramo taxa, including\n                    <jats:italic>Candidatus Solibacter<\/jats:italic>\n                    ,\n                    <jats:italic>Candidatus Koribacter<\/jats:italic>\n                    and\n                    <jats:italic>Bryobacter<\/jats:italic>\n                    . Both bulk soil and roots were characterized by a high abundance of saprotrophic fungi (e.g.,\n                    <jats:italic>Psilocybe<\/jats:italic>\n                    ) and potential pathogens such as\n                    <jats:italic>Fusarium<\/jats:italic>\n                    ,\n                    <jats:italic>Botrytis<\/jats:italic>\n                    and\n                    <jats:italic>Puccinia<\/jats:italic>\n                    . Functional predictions indicated higher prevalence of chemoheterotrophic functions in the roots, while nitrogen and sulfur cycling functions were enriched in bulk soil. Notably, and contrary to prior expectations, co-occurrence networks were more complex in the root endosphere than in bulk soil, suggesting that rhizosphere filtering promotes structured microbial assemblages despite reducing overall diversity. These findings provide a first microbial baseline for\n                    <jats:italic>P. goudotiana<\/jats:italic>\n                    and open new perspectives for understanding plant\u2013microbe interactions and enhancing p\u00e1ramo vegetation resilience under climate change.\n                  <\/jats:p>","DOI":"10.1371\/journal.pone.0357104","type":"journal-article","created":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T17:28:21Z","timestamp":1788197301000},"page":"e0357104","update-policy":"https:\/\/doi.org\/10.1371\/journal.pone.corrections_policy","source":"Crossref","is-referenced-by-count":0,"title":["Root-associated bacterial and fungal communities of the endangered p\u00e1ramo bromeliad Puya goudotiana"],"prefix":"10.1371","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0009-0000-5359-8761","authenticated-orcid":true,"given":"Nataly","family":"Rodr\u00edguez-Lugo","sequence":"first","affiliation":[{"name":"Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"],"department":["Departamento de Biolog\u00eda"]},{"name":"Centro de Investigaciones en Microbiolog\u00eda y Biotecnolog\u00eda-UR (CIMBIUR), Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luz H.","family":"Pati\u00f1o","sequence":"additional","affiliation":[{"name":"Centro de Investigaciones en Microbiolog\u00eda y Biotecnolog\u00eda-UR (CIMBIUR), Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tatiana M.","family":"C\u00e1ceres","sequence":"additional","affiliation":[{"name":"Centro de Investigaciones en Microbiolog\u00eda y Biotecnolog\u00eda-UR (CIMBIUR), Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura","family":"Vega","sequence":"additional","affiliation":[{"name":"Centro de Investigaciones en Microbiolog\u00eda y Biotecnolog\u00eda-UR (CIMBIUR), Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stijn","family":"Hantson","sequence":"additional","affiliation":[{"name":"Programa en Ciencias del Sistema Tierra, Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juan David","family":"Ram\u00edrez","sequence":"additional","affiliation":[{"name":"Centro de Investigaciones en Microbiolog\u00eda y Biotecnolog\u00eda-UR (CIMBIUR), Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"]},{"name":"Environmental and Genomic Health Sciences, College of Public Health, University of South Florida","place":["Tampa, Florida, United States of America"],"department":["Center for Global Health and Interdisciplinary Research, USF Genomics Program, Department of Global"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2334-5741","authenticated-orcid":true,"given":"Adriana","family":"Sanchez","sequence":"additional","affiliation":[{"name":"Escuela de Ciencias e Ingenier\u00eda, Universidad del Rosario","place":["Bogot\u00e1, Colombia"],"department":["Departamento de Biolog\u00eda"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2026,8,31]]},"reference":[{"key":"pone.0357104.ref001","doi-asserted-by":"crossref","first-page":"192","DOI":"10.3389\/fgene.2013.00192","article-title":"P\u00e1ramo is the world\u2019s fastest evolving and coolest biodiversity hotspot","volume":"4","author":"S Madri\u00f1\u00e1n","year":"2013","journal-title":"Front 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