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Virol"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"2621","DOI":"10.1242\/jcs.02982","article-title":"Nucleolar protein upstream binding factor is sequestered into adenovirus DNA replication centres during infection without affecting RNA polymerase I location or ablating rRNA synthesis","volume":"119","author":"FJ Lawrence","year":"2006","journal-title":"J Cell Sci"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"2791","DOI":"10.1128\/MCB.19.4.2791","article-title":"A kinase activity associated with simian virus 40 large T antigen phosphorylates upstream binding factor (UBF) and promotes formation of a stable initiation complex between UBF and SL1","volume":"19","author":"W Zhai","year":"1999","journal-title":"Mol Cell Biol"},{"key":"ref85","doi-asserted-by":"crossref","first-page":"2057","DOI":"10.1158\/0008-5472.CAN-08-3468","article-title":"Activation of ribosomal RNA transcription by hepatitis C virus involves upstream binding factor phosphorylation via induction of cyclin D1","volume":"69","author":"S Raychaudhuri","year":"2009","journal-title":"Cancer Res"},{"key":"ref86","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1111\/j.1348-0421.2005.tb03672.x","article-title":"Cell-specific inhibition of paramyxovirus maturation by proteasome inhibitors","volume":"49","author":"H Watanabe","year":"2005","journal-title":"Microbiol Immunol"},{"key":"ref87","doi-asserted-by":"crossref","first-page":"1306","DOI":"10.1111\/j.1600-0854.2011.01242.x","article-title":"How ubiquitin functions with ESCRTs","volume":"12","author":"SB Shields","year":"2011","journal-title":"Traffic"},{"key":"ref88","doi-asserted-by":"crossref","first-page":"232","DOI":"10.1016\/j.chom.2013.08.012","article-title":"Virus budding and the ESCRT pathway","volume":"14","author":"J Votteler","year":"2013","journal-title":"Cell Host Microbe"},{"key":"ref89","doi-asserted-by":"crossref","first-page":"2263","DOI":"10.1128\/JVI.02218-06","article-title":"The YLDL sequence within Sendai virus M protein is critical for budding of virus-like particles and interacts with Alix\/AIP1 independently of C protein","volume":"81","author":"T Irie","year":"2007","journal-title":"J Virol"},{"key":"ref90","doi-asserted-by":"crossref","first-page":"e59096","DOI":"10.1371\/journal.pone.0059096","article-title":"Proteasome activity influences UV-mediated subnuclear localization changes of NPM","volume":"8","author":"HM Moore","year":"2013","journal-title":"PLoS One"},{"key":"ref91","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1038\/cdd.2011.118","article-title":"The PML nuclear bodies-associated protein TTRAP regulates ribosome biogenesis in nucleolar cavities upon proteasome inhibition","volume":"19","author":"S Vilotti","year":"2012","journal-title":"Cell Death Differ"},{"key":"ref92","doi-asserted-by":"crossref","first-page":"e51184","DOI":"10.1371\/journal.pone.0051184","article-title":"A novel bipartite nuclear localization signal guides BPM1 protein to nucleolus suggesting its Cullin3 independent function","volume":"7","author":"D Leljak Levanic","year":"2012","journal-title":"PLoS One"},{"key":"ref93","doi-asserted-by":"crossref","first-page":"790","DOI":"10.1038\/onc.2010.469","article-title":"Proteasome inhibitors induce nucleolar aggregation of proteasome target proteins and polyadenylated RNA by altering ubiquitin availability","volume":"30","author":"L Latonen","year":"2011","journal-title":"Oncogene"},{"key":"ref94","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1158\/0008-5472.CAN-09-1397","article-title":"Nucleolar targeting of RelA(p65) is regulated by COMMD1-dependent ubiquitination","volume":"70","author":"HC Thoms","year":"2010","journal-title":"Cancer Res"},{"key":"ref95","doi-asserted-by":"crossref","first-page":"1203","DOI":"10.1242\/jcs.062398","article-title":"p53 localizes to intranucleolar regions distinct from the ribosome production compartments","volume":"123","author":"T Kruger","year":"2010","journal-title":"J Cell Sci"},{"key":"ref96","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1038\/nature03207","article-title":"Nucleolar proteome dynamics","volume":"433","author":"JS Andersen","year":"2005","journal-title":"Nature"},{"key":"ref97","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1099\/0022-1317-82-2-345","article-title":"Proteasome inhibitor induces nucleolar translocation of Epstein-Barr virus-encoded EBNA-5","volume":"82","author":"K Pokrovskaja","year":"2001","journal-title":"J Gen Virol"},{"key":"ref98","doi-asserted-by":"crossref","first-page":"1012","DOI":"10.1073\/pnas.98.3.1012","article-title":"Proteins associated with the promyelocytic leukemia gene product (PML)-containing nuclear body move to the nucleolus upon inhibition of proteasome-dependent protein degradation","volume":"98","author":"K Mattsson","year":"2001","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref99","doi-asserted-by":"crossref","first-page":"2243","DOI":"10.1074\/mcp.M900079-MCP200","article-title":"Proteomics analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition","volume":"8","author":"V Matafora","year":"2009","journal-title":"Mol Cell Proteomics"},{"key":"ref100","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1016\/j.virol.2014.01.011","article-title":"The nucleolar phosphoprotein B23 targets Newcastle disease virus matrix protein to the nucleoli and facilitates viral replication","volume":"452\u2013453","author":"Z Duan","year":"2014","journal-title":"Virology"},{"key":"ref101","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1186\/1471-2105-12-317","article-title":"NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins","volume":"12","author":"MS Scott","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"ref102","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1038\/embor.2009.14","article-title":"Nucleolar targeting: the hub of the matter","volume":"10","author":"E Emmott","year":"2009","journal-title":"EMBO Rep"},{"key":"ref103","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1002\/rmv.614","article-title":"Involvement of the nucleolus in replication of human viruses","volume":"19","author":"A Greco","year":"2009","journal-title":"Rev Med Virol"},{"key":"ref104","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/nrmicro1597","article-title":"RNA viruses: hijacking the dynamic nucleolus","volume":"5","author":"JA Hiscox","year":"2007","journal-title":"Nat Rev Microbiol"},{"key":"ref105","article-title":"Viruses and the nucleolus: The fatal attraction","author":"A Salvetti","year":"2013","journal-title":"Biochim Biophys Acta"},{"key":"ref106","doi-asserted-by":"crossref","first-page":"1853","DOI":"10.1073\/pnas.0610977104","article-title":"Influenza virus targets the mRNA export machinery and the nuclear pore complex","volume":"104","author":"N Satterly","year":"2007","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref107","doi-asserted-by":"crossref","first-page":"1243","DOI":"10.1016\/S1097-2765(00)00120-9","article-title":"Vesicular stomatitis virus matrix protein inhibits host cell gene expression by targeting the nucleoporin Nup98","volume":"6","author":"C von Kobbe","year":"2000","journal-title":"Mol Cell"},{"key":"ref108","doi-asserted-by":"crossref","first-page":"1419","DOI":"10.1007\/s00705-003-0112-y","article-title":"The matrix protein of Human respiratory syncytial virus localises to the nucleus of infected cells and inhibits transcription","volume":"148","author":"R Ghildyal","year":"2003","journal-title":"Arch Virol"},{"key":"ref109","doi-asserted-by":"crossref","first-page":"e38052","DOI":"10.1371\/journal.pone.0038052","article-title":"Respiratory syncytial virus matrix protein induces lung epithelial cell cycle arrest through a p53 dependent pathway","volume":"7","author":"T Bian","year":"2012","journal-title":"PLoS One"},{"key":"ref110","doi-asserted-by":"crossref","first-page":"866","DOI":"10.1101\/gad.1624008","article-title":"WD40 protein FBW5 promotes ubiquitination of tumor suppressor TSC2 by DDB1-CUL4-ROC1 ligase","volume":"22","author":"J Hu","year":"2008","journal-title":"Genes Dev"},{"key":"ref111","doi-asserted-by":"crossref","first-page":"4534","DOI":"10.1038\/sj.onc.1209490","article-title":"Cytoplasmic localized ubiquitin ligase cullin 7 binds to p53 and promotes cell growth by antagonizing p53 function","volume":"25","author":"P Andrews","year":"2006","journal-title":"Oncogene"},{"key":"ref112","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1016\/S1097-2765(00)80482-7","article-title":"ROC1, a homolog of APC11, represents a family of cullin partners with an associated ubiquitin ligase activity","volume":"3","author":"T Ohta","year":"1999","journal-title":"Mol Cell"},{"key":"ref113","doi-asserted-by":"crossref","first-page":"1511","DOI":"10.1016\/S1097-2765(02)00783-9","article-title":"NEDD8 modification of CUL1 dissociates p120(CAND1), an inhibitor of CUL1-SKP1 binding and SCF ligases","volume":"10","author":"J Liu","year":"2002","journal-title":"Mol Cell"},{"key":"ref114","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1126\/science.1076164","article-title":"A kinetic framework for a mammalian RNA polymerase in vivo","volume":"298","author":"M Dundr","year":"2002","journal-title":"Science"},{"key":"ref115","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1038\/ncb1282","article-title":"Temporal and spatial control of nucleophosmin by the Ran-Crm1 complex in centrosome duplication","volume":"7","author":"W Wang","year":"2005","journal-title":"Nat Cell Biol"},{"key":"ref116","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/msb.2011.75","article-title":"Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega","volume":"7","author":"F Sievers","year":"2011","journal-title":"Mol Syst Biol"},{"key":"ref117","doi-asserted-by":"crossref","first-page":"61","DOI":"10.2144\/000112036","article-title":"Identification of new fluorescent protein fragments for bimolecular fluorescence complementation analysis under physiological conditions","volume":"40","author":"YJ Shyu","year":"2006","journal-title":"Biotechniques"},{"key":"ref118","doi-asserted-by":"crossref","first-page":"4831","DOI":"10.1128\/JVI.74.10.4831-4838.2000","article-title":"Rescue of mumps virus from cDNA","volume":"74","author":"DK Clarke","year":"2000","journal-title":"J Virol"},{"key":"ref119","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1016\/S0076-6879(05)99018-6","article-title":"Identification of ubiquitination sites and determination of ubiquitin-chain architectures by mass spectrometry","volume":"399","author":"P Kaiser","year":"2005","journal-title":"Methods Enzymol"},{"key":"ref120","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1007\/978-1-59745-566-4_3","article-title":"Identification of SUMO-conjugated proteins and their SUMO attachment sites using proteomic mass spectrometry","volume":"497","author":"JA Wohlschlegel","year":"2009","journal-title":"Methods Mol Biol"},{"key":"ref121","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1021\/pr015504q","article-title":"DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics","volume":"1","author":"DL Tabb","year":"2002","journal-title":"J Proteome Res"},{"key":"ref122","unstructured":"Xu T, Venable J, Park SK, Cociorva D, Lu B, et al. ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program; 2006. AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC 9650 ROCKVILLE PIKE, BETHESDA, MD 20814\u20133996 USA. pp. S174-S174."},{"key":"ref123","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/nmeth1019","article-title":"Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry","volume":"4","author":"JE Elias","year":"2007","journal-title":"Nat Methods"},{"key":"ref124","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1016\/j.ymeth.2006.07.028","article-title":"Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors","volume":"40","author":"L Florens","year":"2006","journal-title":"Methods"},{"key":"ref125","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1186\/1471-2105-15-293","article-title":"jvenn: an interactive Venn diagram viewer","volume":"15","author":"P Bardou","year":"2014","journal-title":"BMC Bioinformatics"},{"key":"ref126","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"W Huang da","year":"2009","journal-title":"Nat Protoc"},{"key":"ref127","article-title":"Curr Protoc Bioinformatics Chapter 13","author":"W Huang da","year":"2009"},{"key":"ref128","doi-asserted-by":"crossref","first-page":"2366","DOI":"10.1038\/nprot.2007.324","article-title":"Integration of biological networks and gene expression data using Cytoscape","volume":"2","author":"MS Cline","year":"2007","journal-title":"Nat Protoc"},{"key":"ref129","doi-asserted-by":"crossref","first-page":"2927","DOI":"10.1093\/bioinformatics\/btq562","article-title":"GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop","volume":"26","author":"J Montojo","year":"2010","journal-title":"Bioinformatics"},{"key":"ref130","doi-asserted-by":"crossref","first-page":"e61281","DOI":"10.1371\/journal.pone.0061281","article-title":"Critical role of the fusion protein cytoplasmic tail sequence in parainfluenza virus assembly","volume":"8","author":"R Stone","year":"2013","journal-title":"PLoS One"}],"container-title":["PLOS Pathogens"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.ppat.1004739","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,8]],"date-time":"2023-08-08T21:18:38Z","timestamp":1691529518000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.ppat.1004739"}},"subtitle":[],"editor":[{"given":"Carolyn B","family":"Coyne","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2015,3,17]]},"references-count":130,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2015,3,17]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.ppat.1004739","relation":{},"ISSN":["1553-7374"],"issn-type":[{"value":"1553-7374","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,3,17]]}}}